Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008595

Physical Location & Seq

Genomic Coordinates Reverse (-)

45968521 .. 45969321

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTGGAGAGATCAGAGCGAGGAGGTGCAAGACACGGTGAAGGAGCTGGTCAGCTCTGGTCAACGGGAGCTCATAAATGGAGGGCGGCCCATGCTGTGAAGATGGCAAGGGTACTCTCTTCAAAGACTGAAGAGAAGAACTCAATTGATGGAGAGGATGTTTTGAAGAATGTTTTGGCTGAACTTGAAAAGCTACTTATACATTCCAAAATACCTTATCCTGTATATTTTGCTTTTGAAGATGATGATATTGAGGCTGTGTTGGCTGATGTCAAGAGGAATGATGTCACTGGGCAGCCTGCTACTGCGACTACTGGAGGATACAAGCTTGTTGTTTCAGTTCCAGAACCTAAGAAACGTGCATCACCCACCCTTACAAACATTCAGGGATGGTTGTCGGGGTTGAAAACTAATGGAGACACAAATCAACTTCCAACTATCACTATTGTAGCATCTTATGACACATTTGGGGCAGCTCCTTCTTTATCAGTGGGAAGTGATAGCAATGGAAGTGGGGTTGTTGCCCTACTTGAAATTGCTAGGTTGTTTTCTGTTCTTTACTCAAATCCCAAGACGAGAGGAAGGTACCATTTGCTTTTCGGGTTGATATCTGGAGGACCTTATAACTACAATGGAACTAATAAGTGGCTCCGGAGCTTTGACCAACGCCTGCGTGAAAGTGTTGACTATGCTATTTGCTTGAATAGTATTGACTCATGGGACAAAGAATTGTGGGTTCATGTCTCTAAGCCTCCAGAGAATGCCTACATAAAGCAAATATTTGAAGGTTTCTCGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0007275 GO:0007399 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0031984 GO:0032501 GO:0032502 GO:0032925 GO:0032926 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048483 GO:0048484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0098827 GO:1900107 GO:1900108 GO:1900145 GO:1900146 GO:1900175 GO:1900176 GO:1903506 GO:2000026 GO:2000112 GO:2000380 GO:2000381 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nicastrin

Protein Analysis

266

Amino Acids

29.23

Weight (kDa)

7.03

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nicastrin	PF05450	146 - 239	3.8e-06	Nicastrin large lobe

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44330
fragaria_vesca	FvH4_3g25670 FvH4_3g25670 FvH4_3g25670 FvH4_3g25670
malus_domestica	MD03G1149800.v1.1 MD11G1168600.v1.1
prunus_persica	Prupe.6G135800_v2.0.a1
pyrus_communis	pycom11g14130
rosa_chinensis	RchiOBHm_Chr5g0045881
rosa_laevigata	RLG00000034394
rosa_multiflora	Rmu_sc0001212.1_g000004
rosa_roxburghii	Rroxscaffold_1G00028740 Rroxscaffold_1G00035230 Rroxscaffold_2G00117520 Rroxscaffold_2G00117530
rosa_rugosa	Rorug05G0226200 Rorug05G0226300
rosa_samantha	Rh5AG307700 Rh5BG316000 Rh5CG342200 Rh5DG326300
rosa_wichuraiana	Rw5G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
Acc65I	GGTACC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	585
AccIII	TCCGGA	1 cut(s)	651
AciI	CCGC	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	114, 587
AgsI	TTSAA	8 cut(s)	123, 166, 188, 239, 406, 533, 703, 785
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	7 cut(s)	47, 55, 71, 193, 328, 476, 657
AluI	AGCT	7 cut(s)	47, 55, 71, 193, 328, 476, 657
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	411, 748
Aor13HI	TCCGGA	1 cut(s)	651
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	295, 473
Asp718I	GGTACC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	88, 617
AsuHPI	GGTGA	2 cut(s)	50, 357
AvaII	GGWCC	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	307, 485
BccI	CCATC	3 cut(s)	97, 143, 384
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	411, 748
BfaI	CTAG	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	3 cut(s)	87, 296, 474
BlsI	GCNGC	3 cut(s)	88, 297, 475
Bme18I	GGWCC	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	88, 617
BmiI	GGNNCC	2 cut(s)	587, 650
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	371, 461
BmuI	ACTGGG	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	3 cut(s)	336, 633, 738
BsaWI	WCCGGW	1 cut(s)	651
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bse1I	ACTGG	2 cut(s)	295, 319
Bse3DI	GCAATG	1 cut(s)	511
BseAI	TCCGGA	1 cut(s)	651
BseGI	GGATG	2 cut(s)	163, 395
BseMI	GCAATG	1 cut(s)	511
BseNI	ACTGG	2 cut(s)	295, 319
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	307, 485
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	734
BsmAI	GTCTC	2 cut(s)	411, 748
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	651
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	651
BspLI	GGNNCC	2 cut(s)	587, 650
BspT107I	GGYRCC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	511
BsrI	ACTGG	2 cut(s)	295, 319
BssMI	GATC	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	124, 126
BstC8I	GCNNGC	2 cut(s)	300, 671
BstDEI	CTNAG	2 cut(s)	351, 747
BstF5I	GGATG	2 cut(s)	163, 395
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	411, 748
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 263
BstV1I	GCAGC	2 cut(s)	307, 485
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	163, 395
BtsIMutI	CAGTG	2 cut(s)	288, 495
Cac8I	GCNNGC	2 cut(s)	300, 671
Cfr13I	GGNCC	2 cut(s)	88, 617
Csp6I	GTAC	2 cut(s)	113, 586
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	3 cut(s)	92, 717, 740
CviQI	GTAC	2 cut(s)	113, 586
DdeI	CTNAG	2 cut(s)	351, 747
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eam1104I	CTCTTC	2 cut(s)	124, 126
EarI	CTCTTC	2 cut(s)	124, 126
Ecl136II	GAGCTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	617
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRV	GATATC	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	3 cut(s)	95, 720, 743
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	3 cut(s)	91, 716, 739
Fnu4HI	GCNGC	3 cut(s)	87, 296, 474
FokI	GGATG	2 cut(s)	170, 402
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	87, 296, 474
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	3 cut(s)	87, 296, 474
GsuI	CTGGAG	3 cut(s)	336, 633, 738
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	652
Hin1II	CATG	3 cut(s)	95, 720, 743
HincII	GTYRAC	2 cut(s)	63, 685
HindII	GTYRAC	2 cut(s)	63, 685
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	713
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	2 cut(s)	50, 357
Hpy166II	GTNNAC	2 cut(s)	63, 685
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	6 cut(s)	274, 344, 612, 652, 755, 793
Hpy8I	GTNNAC	2 cut(s)	63, 685
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	4 cut(s)	35, 489, 576, 779
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	2 cut(s)	358, 797
HpyCH4V	TGCA	2 cut(s)	29, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 263
HpyF3I	CTNAG	2 cut(s)	351, 747
HpySE526I	ACGT	2 cut(s)	358, 797
Hsp92II	CATG	3 cut(s)	95, 720, 743
Kpn2I	TCCGGA	1 cut(s)	651
KpnI	GGTACC	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	5 cut(s)	44, 68, 481, 654, 654
Lsp1109I	GCAGC	2 cut(s)	307, 485
LweI	GCATC	2 cut(s)	371, 461
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	2 cut(s)	358, 797
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	6 cut(s)	111, 112, 143, 148, 178, 251
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	3 cut(s)	144, 534, 728
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	458
MroI	TCCGGA	1 cut(s)	651
MspI	CCGG	1 cut(s)	652
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	766
MwoI	GCNNNNNNNGC	2 cut(s)	92, 263
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	3 cut(s)	95, 720, 743
NlaIV	GGNNCC	2 cut(s)	587, 650
NmuCI	GTSAC	1 cut(s)	286
PctI	GAATGC	1 cut(s)	766
PkrI	GCNGC	3 cut(s)	88, 297, 475
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	617
PsiI	TTATAA	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	617
PspN4I	GGNNCC	2 cut(s)	587, 650
PspPI	GGNCC	2 cut(s)	88, 617
PspPPI	RGGWCCY	1 cut(s)	617
RsaI	GTAC	2 cut(s)	114, 587
RsaNI	GTAC	2 cut(s)	113, 586
SacI	GAGCTC	1 cut(s)	73
SatI	GCNGC	3 cut(s)	87, 296, 474
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	2 cut(s)	88, 617
SchI	GAGTC	1 cut(s)	707
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	2 cut(s)	371, 461
SinI	GGWCC	1 cut(s)	617
Sse9I	AATT	3 cut(s)	144, 534, 728
SsiI	CCGC	1 cut(s)	86
SspI	AATATT	1 cut(s)	780
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	2 cut(s)	361, 800
TaqI	TCGA	1 cut(s)	794
TasI	AATT	3 cut(s)	144, 534, 728
TauI	GCSGC	1 cut(s)	89
TscAI	CASTG	2 cut(s)	295, 495
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	295, 473
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	728
TspRI	CASTG	2 cut(s)	295, 495
VpaK11BI	GGWCC	1 cut(s)	617
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.