Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008595

Physical Location & Seq

Genomic Coordinates Reverse (-)

45955246 .. 45956405

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGGAGAGATCAGAGCGAGGAGGTGCAAGACACAGTGAAGGAGCTGGTCAGCTCTGGTCAACGGGAGCTCATAAATGGAGGGCGGCCCATGCTGTGAAGATGGCAAGGGTACTCTCTTCAAAGACTGAAGAGAAGAACTCAATTGATGGAGAGGATGTTTTGAAGAATGTTTTGGCTGAACTTGAAAAGCTACTTATACATTCCAAAATACCTTATCCTGTATATTTTGCTTTTGAAGATGATGATATTGAGGCTGTGTTGGCTGATGTCAAGAGGAATGATGTCACTGGGCAGCCTGCTACTGCGACTACTGGAGGATACAAGCTTGTTGTTTCAGTTCCAGAACCTAAGAAACGTGCATCACCCACCCTTACAAACATTCAGGGATGGTTGTCGGGGTTGAAAACTAATGGAGACACAAATCAACTTCCAACTATCACTATTGTAGCATCTTATGACACATTTGGGGCAGCTCCTTCTTTATCAGTGGGAAGTGATAGCAATGGAAGTGGGGTTGTTGCCCTACTTGAAATTGCTAGGAGACCTGTGGAAACTAGGAGAAGGCCATGGAACGTACAAGAAGCATCTAGAAGACTCAAGAAGGTCATATGCCGTGCACATGGAAGAGAAAGTCGCAAGAGATTCGAATTACAAAGCAATGTGGAATTTGGACTTCTTGTTGAGTTTGGATTGAGTTTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0007275 GO:0007399 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0031984 GO:0032501 GO:0032502 GO:0032925 GO:0032926 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048483 GO:0048484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0098827 GO:1900107 GO:1900108 GO:1900145 GO:1900146 GO:1900175 GO:1900176 GO:1903506 GO:2000026 GO:2000112 GO:2000380 GO:2000381 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nicastrin

Protein Analysis

235

Amino Acids

25.75

Weight (kDa)

9.32

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44330
fragaria_vesca	FvH4_3g25670 FvH4_3g25670 FvH4_3g25670 FvH4_3g25670
malus_domestica	MD03G1149800.v1.1 MD11G1168600.v1.1
prunus_persica	Prupe.6G135800_v2.0.a1
pyrus_communis	pycom11g14130
rosa_chinensis	RchiOBHm_Chr5g0045881
rosa_laevigata	RLG00000034394
rosa_multiflora	Rmu_sc0001212.1_g000004
rosa_roxburghii	Rroxscaffold_1G00028740 Rroxscaffold_1G00035230 Rroxscaffold_2G00117520 Rroxscaffold_2G00117530
rosa_rugosa	Rorug05G0226200 Rorug05G0226300
rosa_samantha	Rh5AG307700 Rh5BG316000 Rh5CG342200 Rh5DG326300
rosa_wichuraiana	Rw5G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	114, 579
AgsI	TTSAA	6 cut(s)	123, 166, 188, 239, 406, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	6 cut(s)	47, 55, 71, 193, 328, 476
AluI	AGCT	6 cut(s)	47, 55, 71, 193, 328, 476
Alw21I	GWGCWC	2 cut(s)	73, 622
Alw26I	GTCTC	2 cut(s)	411, 538
Alw44I	GTGCAC	1 cut(s)	618
AoxI	GGCC	2 cut(s)	87, 566
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	2 cut(s)	295, 473
ApoI	RAATTY	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	357
AsuII	TTCGAA	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	601
Bbv12I	GWGCWC	2 cut(s)	73, 622
BbvI	GCAGC	2 cut(s)	307, 485
BccI	CCATC	3 cut(s)	97, 143, 384
BceAI	ACGGC	2 cut(s)	600, 688
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	411, 538
BfaI	CTAG	3 cut(s)	540, 558, 591
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	3 cut(s)	87, 296, 474
BlsI	GCNGC	3 cut(s)	88, 297, 475
BmgT120I	GGNCC	1 cut(s)	88
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	371, 461, 596
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	601
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bse1I	ACTGG	2 cut(s)	295, 319
Bse3DI	GCAATG	2 cut(s)	511, 667
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	2 cut(s)	163, 395
BseMI	GCAATG	2 cut(s)	511, 667
BseNI	ACTGG	2 cut(s)	295, 319
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	2 cut(s)	307, 485
BshFI	GGCC	2 cut(s)	89, 568
BsiHKAI	GWGCWC	2 cut(s)	73, 622
BsmAI	GTCTC	2 cut(s)	411, 538
BsnI	GGCC	2 cut(s)	89, 568
Bso31I	GGTCTC	1 cut(s)	538
Bsp119I	TTCGAA	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	73, 622
Bsp143I	GATC	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	569
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	89, 568
BspT104I	TTCGAA	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	538
BsrDI	GCAATG	2 cut(s)	511, 667
BsrI	ACTGG	2 cut(s)	295, 319
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	3 cut(s)	124, 126, 622
BstBI	TTCGAA	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	569
BstF5I	GGATG	2 cut(s)	163, 395
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	411, 538
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 263
BstSLI	GKGCMC	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	307, 485
BstV2I	GAAGAC	1 cut(s)	601
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	89, 568
BtgI	CCRYGG	1 cut(s)	569
BtsCI	GGATG	2 cut(s)	163, 395
BtsIMutI	CAGTG	3 cut(s)	43, 288, 495
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	113, 578
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	3 cut(s)	92, 570, 623
CviQI	GTAC	2 cut(s)	113, 578
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eam1104I	CTCTTC	3 cut(s)	124, 126, 622
EarI	CTCTTC	3 cut(s)	124, 126, 622
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	3 cut(s)	95, 573, 626
FaiI	YATR	9 cut(s)	75, 93, 200, 226, 459, 571, 611, 613, 624
FatI	CATG	3 cut(s)	91, 569, 622
FauNDI	CATATG	1 cut(s)	611
Fnu4HI	GCNGC	3 cut(s)	87, 296, 474
FokI	GGATG	2 cut(s)	170, 402
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	87, 296, 474
FspBI	CTAG	3 cut(s)	540, 558, 591
GluI	GCNGC	3 cut(s)	87, 296, 474
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	89, 568
Hin1II	CATG	3 cut(s)	95, 573, 626
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	597, 645
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	2 cut(s)	63, 620
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	4 cut(s)	274, 344, 591, 601
Hpy8I	GTNNAC	2 cut(s)	63, 620
HpyAV	CCTTC	4 cut(s)	35, 489, 558, 598
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	2 cut(s)	358, 576
HpyCH4V	TGCA	3 cut(s)	29, 362, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 263
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	2 cut(s)	358, 576
Hsp92II	CATG	3 cut(s)	95, 573, 626
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	3 cut(s)	44, 68, 481
LpnPI	CCDG	9 cut(s)	33, 43, 234, 276, 300, 312, 357, 371, 561
Lsp1109I	GCAGC	2 cut(s)	307, 485
LweI	GCATC	3 cut(s)	371, 461, 596
MaeI	CTAG	3 cut(s)	540, 558, 591
MaeII	ACGT	2 cut(s)	358, 576
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	8 cut(s)	111, 112, 143, 148, 178, 251, 606, 639
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	73, 622
MluCI	AATT	4 cut(s)	144, 534, 650, 668
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	7 cut(s)	14, 17, 75, 148, 247, 270, 311
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	92, 263
NcoI	CCATGG	1 cut(s)	569
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	3 cut(s)	95, 573, 626
NmuCI	GTSAC	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	645
PkrI	GCNGC	3 cut(s)	88, 297, 475
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
Psp124BI	GAGCTC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	88
RsaI	GTAC	2 cut(s)	114, 579
RsaNI	GTAC	2 cut(s)	113, 578
SacI	GAGCTC	1 cut(s)	73
SatI	GCNGC	3 cut(s)	87, 296, 474
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	591
SduI	GDGCHC	2 cut(s)	73, 622
SfaNI	GCATC	3 cut(s)	371, 461, 596
SfuI	TTCGAA	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	4 cut(s)	144, 534, 650, 668
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	3 cut(s)	540, 558, 591
SstI	GAGCTC	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	2 cut(s)	361, 579
TaqI	TCGA	1 cut(s)	648
TasI	AATT	4 cut(s)	144, 534, 650, 668
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	645
TscAI	CASTG	3 cut(s)	43, 295, 495
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	295, 473
Tsp45I	GTSAC	1 cut(s)	286
TspRI	CASTG	3 cut(s)	43, 295, 495
VneI	GTGCAC	1 cut(s)	618
XapI	RAATTY	1 cut(s)	668
XbaI	TCTAGA	1 cut(s)	590
XspI	CTAG	3 cut(s)	540, 558, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.