Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007107

Physical Location & Seq

Genomic Coordinates Reverse (-)

23437884 .. 23446969

Gene Structure 9086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0226200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCCTCGACCTCCTCTCGGACTCATGGCATCGCCGGTCGGATCCGAACCGCCGCAACCAATCTTTACTCCGACAACCAGTCCCTGCTCGGCGATATTCGAAAATCTTTCAATGTGTTGAAGGAAGTTGCTGTTGATTTGGAGAGAGCTAATCAGTTTGACAAGGTGAAGGAGATTGAAAATGCTGCTGTTGAATTGCTGGCTACTTGTGAACACTGTATGCATCTCTCATCAGCAATTCAATATGTTGGAGATAACTATGAACCTCCTCCAGAGCCTAGTCAGCTTACTGATTTTGAGAAGTTGCTCAAAAATGAGGTTGCAAAGCAAAAGGCTAAATCATCTTCAACTACAGTAAACCATTCTATGATACGTCAATTCCGGGAAGCTGTCTGGAATGTTCATCATGCAGGACAGCCTATGCCAGGTGACGACCAGGAGGACATCGTAATGACTAGTACTGATGGCAATCTTCGGAATACCACTTGCCCAGTAAGTGGAAAGGCTATCACGGATTTGGAAGATCCAGTCTGCAGTGTTGACTGCAAGCATATATATCAAACAAAGGAGATTATGCATTACTTGCAGTTAAAGGGGGGACGTGGACCATGCCCAATTGCAGGTTGTCCTAAGATGTTGCAGGCGGACAAATTGGTTCGTGATCCATTGCTACTAGTTGAAATTCAAGAATTGCGTGATATGAGGAAGCACCAGACCGCTGATACTAACGTGATAGAGGATTTCACTGAGCTGGATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0007275 GO:0007399 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0031984 GO:0032501 GO:0032502 GO:0032925 GO:0032926 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048483 GO:0048484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0098827 GO:1900107 GO:1900108 GO:1900145 GO:1900146 GO:1900175 GO:1900176 GO:1903506 GO:2000026 GO:2000112 GO:2000380 GO:2000381 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nicastrin

Protein Analysis

254

Amino Acids

28.36

Weight (kDa)

5.3

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Nse	PF11789	148 - 209	2.2e-08	Zinc-finger of the MIZ type in Nse subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54630
fragaria_vesca	FvH4_5g35831
malus_domestica	MD08G1226900.v1.1 MD15G1419200.v1.1
prunus_persica	Prupe.1G564000_v2.0.a1
pyrus_communis	pycom08g19790 pycom15g37210
rosa_chinensis	RchiOBHm_Chr5g0046031
rosa_laevigata	RLG00000034393
rosa_multiflora	Rmu_co8491665.1_g000002 Rmu_sc0001035.1_g000029 Rmu_sc0001212.1_g000011
rosa_roxburghii	Rroxscaffold_1G00035270 Rroxscaffold_1G00035320 Rroxscaffold_3G00224020
rosa_rugosa	Rorug05G0226200 Rorug07G0304000
rosa_samantha	Rh5AG306800 Rh5BG315500 Rh5CG341700 Rh5CG342000 Rh5DG325500
rosa_wichuraiana	Rw0G011960 Rw5G028710 Rw7G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	497
AciI	CCGC	4 cut(s)	51, 54, 644, 717
AclWI	GGATC	4 cut(s)	37, 50, 518, 656
AcsI	RAATTY	1 cut(s)	681
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	4 cut(s)	18, 425, 497, 620
AgsI	TTSAA	8 cut(s)	112, 121, 179, 194, 242, 348, 680, 686
AhdI	GACNNNNNGTC	1 cut(s)	79
AhlI	ACTAGT	2 cut(s)	455, 673
AjiI	CACGTC	1 cut(s)	602
AjnI	CCWGG	2 cut(s)	424, 435
AluBI	AGCT	4 cut(s)	149, 286, 389, 751
AluI	AGCT	4 cut(s)	149, 286, 389, 751
AlwI	GGATC	4 cut(s)	37, 50, 518, 656
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	681
AspS9I	GGNCC	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	178, 440
AsuII	TTCGAA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	605
BaeI	ACNNNNGTAYC	2 cut(s)	714, 747
BamHI	GGATCC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	458
BciT130I	CCWGG	2 cut(s)	426, 437
BcnI	CCSGG	1 cut(s)	383
BcuI	ACTAGT	2 cut(s)	455, 673
BfaI	CTAG	3 cut(s)	279, 456, 674
BfmI	CTRYAG	2 cut(s)	351, 532
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	2 cut(s)	54, 186
BlsI	GCNGC	2 cut(s)	55, 187
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	3 cut(s)	383, 426, 437
Bme18I	GGWCC	1 cut(s)	605
BmeRI	GACNNNNNGTC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	383, 426, 437
BmrI	ACTGGG	1 cut(s)	485
BmsI	GCATC	2 cut(s)	39, 232
BmuI	ACTGGG	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 425, 497, 620
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	79, 491, 527
Bse3DI	GCAATG	1 cut(s)	665
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	426, 437
BseGI	GGATG	1 cut(s)	760
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	4 cut(s)	18, 425, 497, 620
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	3 cut(s)	79, 491, 527
BseRI	GAGGAG	2 cut(s)	4, 258
BseXI	GCAGC	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	36, 382
BslFI	GGGAC	2 cut(s)	67, 612
BslI	CCNNNNNNNGG	4 cut(s)	18, 425, 497, 620
BsmFI	GGGAC	2 cut(s)	67, 612
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	42, 523, 661
BspACI	CCGC	4 cut(s)	51, 54, 644, 717
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	739
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	536
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	4 cut(s)	37, 50, 518, 656
BspT104I	TTCGAA	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	79, 491, 527
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	3 cut(s)	42, 523, 661
Bst2UI	CCWGG	2 cut(s)	426, 437
Bst4CI	ACNGT	2 cut(s)	218, 355
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstBI	TTCGAA	1 cut(s)	100
BstC8I	GCNNGC	3 cut(s)	201, 548, 642
BstDEI	CTNAG	2 cut(s)	630, 747
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	760
BstKTI	GATC	3 cut(s)	45, 526, 664
BstMBI	GATC	3 cut(s)	42, 523, 661
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 583
BstNI	CCWGG	2 cut(s)	426, 437
BstSCI	CCNGG	3 cut(s)	381, 424, 435
BstSFI	CTRYAG	2 cut(s)	351, 532
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	2 cut(s)	42, 523
BstYI	RGATCY	2 cut(s)	42, 523
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	760
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	3 cut(s)	214, 541, 744
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	3 cut(s)	201, 548, 642
CaiI	CAGNNNCTG	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	605
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	3 cut(s)	26, 407, 609
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	2 cut(s)	630, 747
DpnI	GATC	3 cut(s)	44, 525, 663
DpnII	GATC	3 cut(s)	42, 523, 661
DriI	GACNNNNNGTC	1 cut(s)	79
Eam1105I	GACNNNNNGTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	424, 435
EcoT22I	ATGCAT	2 cut(s)	225, 579
FaeI	CATG	3 cut(s)	29, 410, 612
FaqI	GGGAC	2 cut(s)	67, 612
FatI	CATG	3 cut(s)	25, 406, 608
Fnu4HI	GCNGC	2 cut(s)	54, 186
Fsp4HI	GCNGC	2 cut(s)	54, 186
FspBI	CTAG	3 cut(s)	279, 456, 674
GluI	GCNGC	2 cut(s)	54, 186
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	36, 382
Hin1II	CATG	3 cut(s)	29, 410, 612
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	2 cut(s)	36, 382
HphI	GGTGA	2 cut(s)	178, 440
Hpy166II	GTNNAC	4 cut(s)	212, 358, 541, 605
Hpy188I	TCNGA	5 cut(s)	21, 42, 47, 73, 477
Hpy188III	TCNNGA	4 cut(s)	272, 394, 659, 686
Hpy8I	GTNNAC	4 cut(s)	212, 358, 541, 605
HpyAV	CCTTC	2 cut(s)	115, 163
HpyCH4III	ACNGT	2 cut(s)	218, 355
HpyCH4IV	ACGT	3 cut(s)	373, 601, 729
HpyCH4V	TGCA	9 cut(s)	223, 323, 410, 534, 546, 577, 586, 620, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 583
HpyF3I	CTNAG	2 cut(s)	630, 747
HpySE526I	ACGT	3 cut(s)	373, 601, 729
Hsp92II	CATG	3 cut(s)	29, 410, 612
Kzo9I	GATC	3 cut(s)	42, 523, 661
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	39, 232
MaeI	CTAG	3 cut(s)	279, 456, 674
MaeII	ACGT	3 cut(s)	373, 601, 729
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	3 cut(s)	44, 525, 663
MboI	GATC	3 cut(s)	42, 523, 661
MboII	GAAGA	3 cut(s)	336, 464, 533
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	2 cut(s)	42, 523
MluCI	AATT	7 cut(s)	194, 237, 377, 615, 650, 681, 689
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	3 cut(s)	20, 96, 229
MnlI	CCTC	9 cut(s)	16, 22, 25, 276, 279, 310, 433, 696, 730
Mph1103I	ATGCAT	2 cut(s)	225, 579
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	2 cut(s)	36, 382
MspR9I	CCNGG	3 cut(s)	383, 426, 437
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	426, 437
MwoI	GCNNNNNNNGC	2 cut(s)	283, 583
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	3 cut(s)	42, 523, 661
NlaIII	CATG	3 cut(s)	29, 410, 612
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	428
NsiI	ATGCAT	2 cut(s)	225, 579
NspV	TTCGAA	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	55, 187
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	424, 435
PspGI	CCWGG	2 cut(s)	424, 435
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	605
PstI	CTGCAG	1 cut(s)	536
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	42, 523
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	2 cut(s)	54, 186
Sau3AI	GATC	3 cut(s)	42, 523, 661
Sau96I	GGNCC	1 cut(s)	605
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	3 cut(s)	383, 426, 437
SfaNI	GCATC	2 cut(s)	39, 232
SfcI	CTRYAG	2 cut(s)	351, 532
SfuI	TTCGAA	1 cut(s)	100
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	449
SpeI	ACTAGT	2 cut(s)	455, 673
Sse9I	AATT	7 cut(s)	194, 237, 377, 615, 650, 681, 689
SsiI	CCGC	4 cut(s)	51, 54, 644, 717
SspMI	CTAG	3 cut(s)	279, 456, 674
StyD4I	CCNGG	3 cut(s)	381, 424, 435
TaaI	ACNGT	2 cut(s)	218, 355
TaiI	ACGT	3 cut(s)	376, 604, 732
TaqI	TCGA	2 cut(s)	8, 100
TasI	AATT	7 cut(s)	194, 237, 377, 615, 650, 681, 689
TatI	WGTACW	1 cut(s)	458
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TscAI	CASTG	3 cut(s)	221, 541, 751
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	276, 392
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	3 cut(s)	221, 541, 751
Van91I	CCANNNNNTGG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	605
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	681
XspI	CTAG	3 cut(s)	279, 456, 674
ZrmI	AGTACT	1 cut(s)	460
Zsp2I	ATGCAT	2 cut(s)	225, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.