Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007107

Physical Location & Seq

Genomic Coordinates Reverse (-)

39139904 .. 39144990

Gene Structure 5087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG341700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGAGAGGCAGTCGGCGACCCAAGCCGTCGATGAACCCACGGCCACCGCCACCATCAACGCCGCTCGAGCACTTCCGCCACCGCGACTCCGACGCAAGCTTCGCAAGCAGCTGCCCCTCCTCGATCGGAATCGGCGGCGGTCCCGGCGGCTCCTTCGCCAACGTCGACCTATACAAAGACCGGTCCTACCAGCAATCCGCGCTCTCCGCCATCAATTCCTACCTTTCCTCTCACTCCGTCCAAGTCTTCCTCAAATTCCCGATCCCTCCCGCCAGAGAGATCACCGAAGCGCTGAAATTCCTCGTCGCCCGGCTCGATTGGCCGTCTCCGAAGCTCGAAGACGACCTCCCGGTGATTCTGAAATCCCTGAAATGCCCTTTCAAGCTCAACAAGTCCATGATTCGAAACCCTACGGTGAATTCGCACCAGTGGCCGAACCTGCTCGCTGTGATTCACTGGCTGTTCCAGCTTGTTCGTTATAACGATCACCTGGAGCAGAATTCGGAGGCGTTTCTGGACAACAACCCTGTGGGTCAGTACACGTTGCAGAGCTACTTGCATTATATAAGGGGCCAAGATGATGAAGCTGAGGAGGTGGATCGTGAGTTTGTGGGGAAGTTCGAGAGGCAGAGGGACGAATCGGAGGAGCAATTGAAGGTTCTGCAGCAGCATGCGACGGAGCTGGAGGCGGAAGTGGAGGCCTTGAGGTCAGAGCCGTCGCCTAAGGAGGCATTGGAGAGGGAGAAGAGTATGCTGGAAGAGGATGTGAGCAAGTTCCATGAGATGATTGAGAATCTCGACAAGAATGTGAAGAAACTGCAGAAGTTTTTGGAGGAGAAAGAGAAGGCGTTGGAGGCCAAGAGGGAAGAGAAGAAGAGGATTTTACAGGAGAATGAGGAGTTGAAGAAGAGAGTCGAATCACAGAGTTTTAATGAGAGGGATGTGGAGAGAATGAAGAGGGAATTGCAGGCTGTGGAGAGGGACATTGGGGAAGCCGAGCTGGCTAGGAATGTGTGGGAGGAGAAGGTTTGGGAATTGGATAACACGCTCGGCCCAAAGGTTAAGGAGTTGGAGGCTTTGGCAATGGAATGCAACCAAGTCATGAGGAGGTTGAAACTTTGTAATGGCTTTCAGTATGTATTGAATCCTAAGGGATCAACACCTGCTGAGGTGATGGGAGTTGACTATAAATCAACTTTAAAGCCTGCACTTGACTCATACTCTCAAAAAATAAAGAAGGATTCTGTGGAAACACTGGATGGGTTGATTTTGCTTCAGCATCAGTCGAGTGCACTTTCTGCTGATATTGAGGAAAAAAGAAATGATATATCAACACTTCAGTCGCGTCTTGATGAAGTGGAAGCTCAATTGAATTCATTAAGGAAAGAGACACAGGACTATACTCATAGATGTGAAGAAGAAGCTAGAAATATGATGGATGAAGTTAAAAAGGAGGCTCATGACATGAATATTGTGGAAAGAGAAGCAGCCGAGATTCTGAAGACTTCCAAATTGAAATTGCAGGAAGTAACTAAACAAACTGAAGAAGAGACTCAGAAGTGTGCTTGCGAACTCATTGCCATAATTGACTCGGTCTCAAAATACAAAGAACATGTGCAGTCAAAGATTGCAGAAATGAGTAGAGATGTCTCAGATACTGCAGCTATGTTATCAGGTATTCACAAAGGTTCATTGCAATCCCAGTACAGTTTTCTGTTCGATTCAAGCCAACGCGCTGAATCAACTGAAGCCAGCAAGGTCTATCAGCTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndc80_HEC

Protein Analysis

591

Amino Acids

67.9

Weight (kDa)

5.43

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndc80_HEC	PF03801	59 - 163	1.3e-15	HEC/Ndc80p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54630
fragaria_vesca	FvH4_5g35831
malus_domestica	MD08G1226900.v1.1 MD15G1419200.v1.1
prunus_persica	Prupe.1G564000_v2.0.a1
pyrus_communis	pycom08g19790 pycom15g37210
rosa_chinensis	RchiOBHm_Chr5g0046031
rosa_laevigata	RLG00000034393
rosa_multiflora	Rmu_co8491665.1_g000002 Rmu_sc0001035.1_g000029 Rmu_sc0001212.1_g000011
rosa_roxburghii	Rroxscaffold_1G00035270 Rroxscaffold_1G00035320 Rroxscaffold_3G00224020
rosa_rugosa	Rorug05G0226200 Rorug07G0304000
rosa_samantha	Rh5AG306800 Rh5BG315500 Rh5CG341700 Rh5CG342000 Rh5DG325500
rosa_wichuraiana	Rw0G011960 Rw5G028710 Rw7G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AarI	CACCTGC	1 cut(s)	1171
Acc36I	ACCTGC	2 cut(s)	447, 1171
AccBSI	CCGCTC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	4 cut(s)	84, 200, 1345, 1734
AclWI	GGATC	3 cut(s)	256, 606, 1162
AcoI	YGGCCR	3 cut(s)	41, 320, 431
AcsI	RAATTY	5 cut(s)	254, 296, 418, 499, 1372
AcuI	CTGAAG	6 cut(s)	1259, 1322, 1520, 1563, 1754, 1767
AfaI	GTAC	2 cut(s)	539, 1706
AfeI	AGCGCT	1 cut(s)	291
AflIII	ACRYGT	2 cut(s)	540, 1612
AgeI	ACCGGT	1 cut(s)	180
AgsI	TTSAA	8 cut(s)	382, 655, 904, 1114, 1144, 1372, 1516, 1725
AjnI	CCWGG	1 cut(s)	489
Alw21I	GWGCWC	2 cut(s)	72, 1294
Alw26I	GTCTC	5 cut(s)	330, 1382, 1544, 1600, 1654
Alw44I	GTGCAC	1 cut(s)	1290
AlwI	GGATC	3 cut(s)	256, 606, 1162
AlwNI	CAGNNNCTG	1 cut(s)	1658
Ama87I	CYCGRG	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	291
AoxI	GGCC	7 cut(s)	41, 320, 431, 571, 699, 855, 1051
ApaLI	GTGCAC	1 cut(s)	1290
ApeKI	GCWGC	6 cut(s)	108, 111, 664, 667, 1487, 1661
ApoI	RAATTY	5 cut(s)	254, 296, 418, 499, 1372
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AsiGI	ACCGGT	1 cut(s)	180
AspLEI	GCGC	3 cut(s)	202, 292, 1736
AspS9I	GGNCC	4 cut(s)	140, 183, 571, 1052
AsuC2I	CCSGG	3 cut(s)	144, 310, 350
AsuHPI	GGTGA	5 cut(s)	274, 364, 427, 479, 1183
AsuII	TTCGAA	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	140, 183
AxyI	CCTNAGG	2 cut(s)	723, 1149
BaeGI	GKGCMC	1 cut(s)	1294
BbsI	GAAGAC	3 cut(s)	238, 345, 1508
Bbv12I	GWGCWC	2 cut(s)	72, 1294
BbvCI	CCTCAGC	2 cut(s)	588, 1167
BbvI	GCAGC	6 cut(s)	98, 120, 676, 679, 1499, 1673
BccI	CCATC	5 cut(s)	61, 218, 1168, 1253, 1429
BceAI	ACGGC	4 cut(s)	10, 56, 307, 700
BcgI	CGANNNNNNTGC	2 cut(s)	1559, 1593
BciT130I	CCWGG	1 cut(s)	491
BcnI	CCSGG	3 cut(s)	144, 310, 350
BcoDI	GTCTC	5 cut(s)	330, 1382, 1544, 1600, 1654
BfaI	CTAG	2 cut(s)	1005, 1425
BfmI	CTRYAG	3 cut(s)	662, 818, 1659
BfoI	RGCGCY	1 cut(s)	293
BfuAI	ACCTGC	2 cut(s)	447, 1171
BglI	GCCNNNNNGGC	1 cut(s)	1001
BisI	GCNGC	9 cut(s)	62, 109, 112, 136, 148, 665, 668, 1488, 1662
BlsI	GCNGC	9 cut(s)	63, 110, 113, 137, 149, 666, 669, 1489, 1663
Bme1390I	CCNGG	4 cut(s)	144, 310, 350, 491
Bme18I	GGWCC	2 cut(s)	140, 183
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	4 cut(s)	140, 183, 571, 1052
BmiI	GGNNCC	3 cut(s)	142, 151, 572
BmrFI	CCNGG	4 cut(s)	144, 310, 350, 491
BmrI	ACTGGG	1 cut(s)	1696
BmsI	GCATC	1 cut(s)	1288
BmuI	ACTGGG	1 cut(s)	1696
BpiI	GAAGAC	3 cut(s)	238, 345, 1508
BpmI	CTGGAG	2 cut(s)	512, 704
Bpu10I	CCTNAGC	2 cut(s)	588, 1167
Bpu14I	TTCGAA	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	724
BpuMI	CCSGG	3 cut(s)	144, 310, 350
BsaBI	GATNNNNATC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	1600
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	4 cut(s)	427, 461, 1260, 1702
Bse21I	CCTNAGG	2 cut(s)	723, 1149
Bse3DI	GCAATG	3 cut(s)	1089, 1575, 1691
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	4 cut(s)	769, 946, 1264, 1444
BseJI	GATNNNNATC	1 cut(s)	128
BseMI	GCAATG	3 cut(s)	1089, 1575, 1691
BseMII	CTCAG	4 cut(s)	579, 1158, 1568, 1665
BseNI	ACTGG	4 cut(s)	427, 461, 1260, 1702
BseRI	GAGGAG	7 cut(s)	109, 605, 659, 848, 911, 1034, 1120
BseSI	GKGCMC	1 cut(s)	1294
BseXI	GCAGC	6 cut(s)	98, 120, 676, 679, 1499, 1673
BsgI	GTGCAG	2 cut(s)	1191, 1637
Bsh1236I	CGCG	4 cut(s)	84, 200, 1345, 1734
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	7 cut(s)	43, 322, 433, 573, 701, 857, 1053
BshTI	ACCGGT	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	72, 1294
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	4 cut(s)	144, 181, 310, 350
BslFI	GGGAC	3 cut(s)	126, 647, 995
BsmAI	GTCTC	5 cut(s)	330, 1382, 1544, 1600, 1654
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	3 cut(s)	126, 647, 995
BsmI	GAATGC	1 cut(s)	1094
BsnI	GGCC	7 cut(s)	43, 322, 433, 573, 701, 857, 1053
Bso31I	GGTCTC	1 cut(s)	1600
BsoBI	CYCGRG	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	403
Bsp1286I	GDGCHC	2 cut(s)	72, 1294
Bsp143I	GATC	6 cut(s)	123, 261, 279, 484, 598, 1154
BspANI	GGCC	7 cut(s)	43, 322, 433, 573, 701, 857, 1053
BspCNI	CTCAG	4 cut(s)	580, 1159, 1567, 1664
BspFNI	CGCG	4 cut(s)	84, 200, 1345, 1734
BspHI	TCATGA	2 cut(s)	1101, 1459
BspLI	GGNNCC	3 cut(s)	142, 151, 572
BspMAI	CTGCAG	3 cut(s)	666, 822, 1663
BspMI	ACCTGC	2 cut(s)	447, 1171
BspPI	GGATC	3 cut(s)	256, 606, 1162
BspT104I	TTCGAA	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	1600
BsrBI	CCGCTC	1 cut(s)	64
BsrDI	GCAATG	3 cut(s)	1089, 1575, 1691
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	4 cut(s)	427, 461, 1260, 1702
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	6 cut(s)	123, 261, 279, 484, 598, 1154
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	415, 1709
Bst6I	CTCTTC	7 cut(s)	740, 753, 861, 869, 902, 950, 1542
BstAPI	GCANNNNNTGC	1 cut(s)	1298
BstBI	TTCGAA	1 cut(s)	403
BstC8I	GCNNGC	9 cut(s)	97, 106, 444, 672, 969, 1002, 1206, 1567, 1753
BstDEI	CTNAG	6 cut(s)	588, 723, 1149, 1167, 1554, 1651
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	4 cut(s)	769, 946, 1264, 1444
BstFNI	CGCG	4 cut(s)	84, 200, 1345, 1734
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	3 cut(s)	202, 292, 1736
BstKTI	GATC	6 cut(s)	126, 264, 282, 487, 601, 1157
BstMAI	GTCTC	5 cut(s)	330, 1382, 1544, 1600, 1654
BstMBI	GATC	6 cut(s)	123, 261, 279, 484, 598, 1154
BstMCI	CGRYCG	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	2 cut(s)	674, 1616
BstSCI	CCNGG	4 cut(s)	142, 308, 348, 489
BstSFI	CTRYAG	3 cut(s)	662, 818, 1659
BstSLI	GKGCMC	1 cut(s)	1294
BstUI	CGCG	4 cut(s)	84, 200, 1345, 1734
BstV1I	GCAGC	6 cut(s)	98, 120, 676, 679, 1499, 1673
BstV2I	GAAGAC	3 cut(s)	238, 345, 1508
Bsu36I	CCTNAGG	2 cut(s)	723, 1149
BsuRI	GGCC	7 cut(s)	43, 322, 433, 573, 701, 857, 1053
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	4 cut(s)	769, 946, 1264, 1444
BtsIMutI	CAGTG	3 cut(s)	434, 454, 1253
BveI	ACCTGC	2 cut(s)	447, 1171
Cac8I	GCNNGC	9 cut(s)	97, 106, 444, 672, 969, 1002, 1206, 1567, 1753
CaiI	CAGNNNCTG	1 cut(s)	1658
CciI	TCATGA	2 cut(s)	1101, 1459
CfoI	GCGC	3 cut(s)	202, 292, 1736
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	4 cut(s)	140, 183, 571, 1052
CseI	GACGC	2 cut(s)	101, 1334
Csp6I	GTAC	2 cut(s)	538, 1705
CspAI	ACCGGT	1 cut(s)	180
CviAII	CATG	7 cut(s)	397, 671, 779, 1102, 1460, 1465, 1613
CviQI	GTAC	2 cut(s)	538, 1705
DdeI	CTNAG	6 cut(s)	588, 723, 1149, 1167, 1554, 1651
DpnI	GATC	6 cut(s)	125, 263, 281, 486, 600, 1156
DpnII	GATC	6 cut(s)	123, 261, 279, 484, 598, 1154
DraI	TTTAAA	1 cut(s)	1200
EaeI	YGGCCR	3 cut(s)	41, 320, 431
Eam1104I	CTCTTC	7 cut(s)	740, 753, 861, 869, 902, 950, 1542
EarI	CTCTTC	7 cut(s)	740, 753, 861, 869, 902, 950, 1542
EciI	GGCGGA	3 cut(s)	65, 196, 704
Eco147I	AGGCCT	1 cut(s)	701
Eco31I	GGTCTC	1 cut(s)	1600
Eco47I	GGWCC	2 cut(s)	140, 183
Eco47III	AGCGCT	1 cut(s)	291
Eco57I	CTGAAG	6 cut(s)	1259, 1322, 1520, 1563, 1754, 1767
Eco81I	CCTNAGG	2 cut(s)	723, 1149
Eco88I	CYCGRG	1 cut(s)	65
EcoRI	GAATTC	3 cut(s)	418, 499, 1372
EcoRII	CCWGG	1 cut(s)	489
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	7 cut(s)	400, 674, 782, 1105, 1463, 1468, 1616
FaqI	GGGAC	3 cut(s)	126, 647, 995
FatI	CATG	7 cut(s)	396, 670, 778, 1101, 1459, 1464, 1612
FauI	CCCGC	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	9 cut(s)	62, 109, 112, 136, 148, 665, 668, 1488, 1662
FokI	GGATG	4 cut(s)	776, 953, 1271, 1451
Fsp4HI	GCNGC	9 cut(s)	62, 109, 112, 136, 148, 665, 668, 1488, 1662
FspBI	CTAG	2 cut(s)	1005, 1425
GlaI	GCGC	3 cut(s)	201, 291, 1735
GluI	GCNGC	9 cut(s)	62, 109, 112, 136, 148, 665, 668, 1488, 1662
GsuI	CTGGAG	2 cut(s)	512, 704
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	7 cut(s)	43, 322, 433, 573, 701, 857, 1053
HapII	CCGG	4 cut(s)	144, 181, 310, 350
HgaI	GACGC	2 cut(s)	101, 1334
HhaI	GCGC	3 cut(s)	202, 292, 1736
Hin1II	CATG	7 cut(s)	400, 674, 782, 1105, 1463, 1468, 1616
Hin6I	GCGC	3 cut(s)	200, 290, 1734
HinP1I	GCGC	3 cut(s)	200, 290, 1734
HincII	GTYRAC	2 cut(s)	166, 1183
HindII	GTYRAC	2 cut(s)	166, 1183
HindIII	AAGCTT	1 cut(s)	97
HpaII	CCGG	4 cut(s)	144, 181, 310, 350
HphI	GGTGA	5 cut(s)	274, 364, 427, 479, 1183
Hpy166II	GTNNAC	4 cut(s)	166, 540, 1183, 1292
Hpy188III	TCNNGA	8 cut(s)	259, 515, 602, 622, 797, 1102, 1349, 1460
Hpy8I	GTNNAC	4 cut(s)	166, 540, 1183, 1292
Hpy99I	CGWCG	6 cut(s)	31, 95, 167, 308, 679, 721
HpyAV	CCTTC	5 cut(s)	163, 649, 838, 1018, 1231
HpyCH4III	ACNGT	2 cut(s)	415, 1709
HpyCH4IV	ACGT	2 cut(s)	162, 542
HpyF3I	CTNAG	6 cut(s)	588, 723, 1149, 1167, 1554, 1651
HpySE526I	ACGT	2 cut(s)	162, 542
Hsp92II	CATG	7 cut(s)	400, 674, 782, 1105, 1463, 1468, 1616
HspAI	GCGC	3 cut(s)	200, 290, 1734
Kzo9I	GATC	6 cut(s)	123, 261, 279, 484, 598, 1154
LmnI	GCTCC	4 cut(s)	155, 493, 646, 679
Lsp1109I	GCAGC	6 cut(s)	98, 120, 676, 679, 1499, 1673
LweI	GCATC	1 cut(s)	1288
MaeI	CTAG	2 cut(s)	1005, 1425
MaeII	ACGT	2 cut(s)	162, 542
MaeIII	GTNAC	1 cut(s)	1528
MalI	GATC	6 cut(s)	125, 263, 281, 486, 600, 1156
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	6 cut(s)	123, 261, 279, 484, 598, 1154
MfeI	CAATTG	2 cut(s)	650, 1367
MhlI	GDGCHC	2 cut(s)	72, 1294
MlyI	GAGTC	5 cut(s)	80, 921, 1208, 1546, 1583
MmeI	TCCRAC	3 cut(s)	114, 831, 1050
MseI	TTAA	5 cut(s)	930, 1062, 1199, 1379, 1446
MslI	CAYNNNNRTG	1 cut(s)	1410
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	4 cut(s)	144, 181, 310, 350
MspR9I	CCNGG	4 cut(s)	144, 310, 350, 491
MunI	CAATTG	2 cut(s)	650, 1367
Mva1269I	GAATGC	1 cut(s)	1094
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	4 cut(s)	84, 200, 1345, 1734
NciI	CCSGG	3 cut(s)	144, 310, 350
NdeII	GATC	6 cut(s)	123, 261, 279, 484, 598, 1154
NlaIII	CATG	7 cut(s)	400, 674, 782, 1105, 1463, 1468, 1616
NlaIV	GGNNCC	3 cut(s)	142, 151, 572
NmeAIII	GCCGAG	3 cut(s)	1021, 1029, 1516
NspI	RCATGY	2 cut(s)	674, 1616
NspV	TTCGAA	1 cut(s)	403
PaeI	GCATGC	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	65
PagI	TCATGA	2 cut(s)	1101, 1459
PaqCI	CACCTGC	1 cut(s)	1171
PceI	AGGCCT	1 cut(s)	701
PciI	ACATGT	1 cut(s)	1612
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 312
PctI	GAATGC	1 cut(s)	1094
PflFI	GACNNNGTC	1 cut(s)	1592
PinAI	ACCGGT	1 cut(s)	180
PkrI	GCNGC	9 cut(s)	63, 110, 113, 137, 149, 666, 669, 1489, 1663
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	5 cut(s)	80, 920, 1208, 1546, 1583
PpsI	GAGTC	5 cut(s)	80, 920, 1208, 1546, 1583
PscI	ACATGT	1 cut(s)	1612
PsiI	TTATAA	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	3 cut(s)	142, 151, 572
PspPI	GGNCC	4 cut(s)	140, 183, 571, 1052
PspXI	VCTCGAGB	1 cut(s)	65
PstI	CTGCAG	3 cut(s)	666, 822, 1663
PstNI	CAGNNNCTG	1 cut(s)	1658
PsyI	GACNNNGTC	1 cut(s)	1592
PvuI	CGATCG	1 cut(s)	126
PvuII	CAGCTG	1 cut(s)	111
RsaI	GTAC	2 cut(s)	539, 1706
RsaNI	GTAC	2 cut(s)	538, 1705
RseI	CAYNNNNRTG	1 cut(s)	1410
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	5 cut(s)	930, 1062, 1199, 1379, 1446
SatI	GCNGC	9 cut(s)	62, 109, 112, 136, 148, 665, 668, 1488, 1662
Sau3AI	GATC	6 cut(s)	123, 261, 279, 484, 598, 1154
Sau96I	GGNCC	4 cut(s)	140, 183, 571, 1052
SchI	GAGTC	5 cut(s)	80, 921, 1208, 1546, 1583
ScrFI	CCNGG	4 cut(s)	144, 310, 350, 491
SduI	GDGCHC	2 cut(s)	72, 1294
SfaNI	GCATC	1 cut(s)	1288
SfcI	CTRYAG	3 cut(s)	662, 818, 1659
Sfr274I	CTCGAG	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	403
SinI	GGWCC	2 cut(s)	140, 183
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	1410
SmlI	CTYRAG	2 cut(s)	65, 703
SmoI	CTYRAG	2 cut(s)	65, 703
SphI	GCATGC	1 cut(s)	674
SseBI	AGGCCT	1 cut(s)	701
SspI	AATATT	1 cut(s)	1471
SspMI	CTAG	2 cut(s)	1005, 1425
StuI	AGGCCT	1 cut(s)	701
StyD4I	CCNGG	4 cut(s)	142, 308, 348, 489
TaaI	ACNGT	2 cut(s)	415, 1709
TaiI	ACGT	2 cut(s)	165, 545
TaqII	GACCGA	1 cut(s)	1582
TatI	WGTACW	2 cut(s)	537, 1704
TauI	GCSGC	3 cut(s)	64, 138, 150
Tru1I	TTAA	5 cut(s)	930, 1062, 1199, 1379, 1446
Tru9I	TTAA	5 cut(s)	930, 1062, 1199, 1379, 1446
TscAI	CASTG	3 cut(s)	434, 461, 1260
TseI	GCWGC	6 cut(s)	108, 111, 664, 667, 1487, 1661
TspDTI	ATGAA	8 cut(s)	47, 597, 968, 1365, 1368, 1455, 1481, 1680
TspGWI	ACGGA	2 cut(s)	226, 692
TspRI	CASTG	3 cut(s)	434, 461, 1260
Tth111I	GACNNNGTC	1 cut(s)	1592
VneI	GTGCAC	1 cut(s)	1290
VpaK11BI	GGWCC	2 cut(s)	140, 183
XapI	RAATTY	5 cut(s)	254, 296, 418, 499, 1372
XceI	RCATGY	2 cut(s)	674, 1616
XhoI	CTCGAG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	1005, 1425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.