Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007107

Physical Location & Seq

Genomic Coordinates Forward (+)

51369164 .. 51370946

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGAGGCAGTCGGCGACCCAAGCTGAGGAGGCAAGATGATGAAGCTGAGGAGCCTAAGGAGGCATTGGAGAGGGAGAAGAGTATGCTGGAAGAGGATGTGAGCAAGTTCCATGAGATGATTGAGAATCTCGACAAGAATGTGAAGAAACTGCAGAAAGTTTTGGAGGAGAAAGAGAAGGCGTTGGAGGCCAAGAGGGAAGAGAAGAAGAGGATTTTACAGGAGAATGAGGAGTTGAAGAAGAGAATTGAATCGCAGAGTTTTAATGAGAGGGATGTGGAGAGAATGAAGAGGGAATTGCAGGCTGTGGAGAGGGACATTGGGGAAGCGGAGCTGCCTAGAAATGTCTGGGAGGAGGAGAAGGTTTGGGAATTGGATGAAACGCTCGGCCCAAAGGTTAAGGAGTTGGAGGTTTTGGCAATGGAGTGCAACCAAGTCATGAGGAGGTTGAAACTTTGTAATGGCTTTCAGTATATATTGAATCCTAAGGGATCAACAGCTGCTGAGGTGATGGGAGTTGACTATAAATCAACTTTAAAGCCTGCACTTGACTCATACTCTCAAAAAATAAAGAAGGATTCTGTGGAAACACTAGATGGGTTGATTTTGCTTCAGCATCAGTCAAGTGCACTTTCTGCTGATATTGAGGAAAAAAGAAATGATATATCAACACTTCAGTCGCGTCTTGATGAAGTAAGTGGATCAAAGCTAACTGTTTCTGCATGGGAAACAAATGAGCACATTTGGTCATCTGTACTTTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndc80_HEC

Protein Analysis

255

Amino Acids

29.71

Weight (kDa)

5.25

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54630
fragaria_vesca	FvH4_5g35831
malus_domestica	MD08G1226900.v1.1 MD15G1419200.v1.1
prunus_persica	Prupe.1G564000_v2.0.a1
pyrus_communis	pycom08g19790 pycom15g37210
rosa_chinensis	RchiOBHm_Chr5g0046031
rosa_laevigata	RLG00000034393
rosa_multiflora	Rmu_co8491665.1_g000002 Rmu_sc0001035.1_g000029 Rmu_sc0001212.1_g000011
rosa_roxburghii	Rroxscaffold_1G00035270 Rroxscaffold_1G00035320 Rroxscaffold_3G00224020
rosa_rugosa	Rorug05G0226200 Rorug07G0304000
rosa_samantha	Rh5AG306800 Rh5BG315500 Rh5CG341700 Rh5CG342000 Rh5DG325500
rosa_wichuraiana	Rw0G011960 Rw5G028710 Rw7G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	682
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	2 cut(s)	499, 709
AcuI	CTGAAG	2 cut(s)	596, 659
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	238, 251, 451, 481
AluBI	AGCT	5 cut(s)	25, 47, 334, 500, 709
AluI	AGCT	5 cut(s)	25, 47, 334, 500, 709
Alw21I	GWGCWC	2 cut(s)	631, 741
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	2 cut(s)	499, 709
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	2 cut(s)	189, 388
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	2 cut(s)	334, 500
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	520
AxyI	CCTNAGG	2 cut(s)	57, 486
BaeGI	GKGCMC	1 cut(s)	631
Bbv12I	GWGCWC	2 cut(s)	631, 741
BbvCI	CCTCAGC	3 cut(s)	26, 48, 504
BbvI	GCAGC	2 cut(s)	321, 487
BccI	CCATC	2 cut(s)	505, 590
BfaI	CTAG	2 cut(s)	339, 593
BfmI	CTRYAG	1 cut(s)	152
BisI	GCNGC	2 cut(s)	335, 501
BlsI	GCNGC	2 cut(s)	336, 502
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	625
Bpu10I	CCTNAGC	3 cut(s)	26, 48, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse21I	CCTNAGG	2 cut(s)	57, 486
Bse3DI	GCAATG	1 cut(s)	426
BseGI	GGATG	3 cut(s)	103, 280, 382
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	17, 39, 495
BseRI	GAGGAG	7 cut(s)	43, 65, 182, 245, 368, 371, 457
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	2 cut(s)	321, 487
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	682
BshFI	GGCC	2 cut(s)	191, 390
BsiHKAI	GWGCWC	2 cut(s)	631, 741
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	191, 390
Bsp1286I	GDGCHC	2 cut(s)	631, 741
Bsp143I	GATC	2 cut(s)	491, 701
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	2 cut(s)	191, 390
BspCNI	CTCAG	3 cut(s)	18, 40, 496
BspFNI	CGCG	1 cut(s)	682
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	2 cut(s)	499, 709
BsrDI	GCAATG	1 cut(s)	426
BssMI	GATC	2 cut(s)	491, 701
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	6 cut(s)	74, 87, 195, 203, 236, 284
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	303, 543
BstDEI	CTNAG	5 cut(s)	26, 48, 57, 486, 504
BstF5I	GGATG	3 cut(s)	103, 280, 382
BstFNI	CGCG	1 cut(s)	682
BstKTI	GATC	2 cut(s)	494, 704
BstMBI	GATC	2 cut(s)	491, 701
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 31, 188, 635
BstSFI	CTRYAG	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	631
BstUI	CGCG	1 cut(s)	682
BstV1I	GCAGC	2 cut(s)	321, 487
Bsu36I	CCTNAGG	2 cut(s)	57, 486
BsuRI	GGCC	2 cut(s)	191, 390
BtsCI	GGATG	3 cut(s)	103, 280, 382
Cac8I	GCNNGC	2 cut(s)	303, 543
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	3 cut(s)	113, 439, 723
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	5 cut(s)	26, 48, 57, 486, 504
DpnI	GATC	2 cut(s)	493, 703
DpnII	GATC	2 cut(s)	491, 701
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	6 cut(s)	74, 87, 195, 203, 236, 284
EarI	CTCTTC	6 cut(s)	74, 87, 195, 203, 236, 284
Eco57I	CTGAAG	2 cut(s)	596, 659
Eco81I	CCTNAGG	2 cut(s)	57, 486
FaeI	CATG	3 cut(s)	116, 442, 726
FaiI	YATR	9 cut(s)	86, 114, 440, 474, 476, 525, 556, 665, 724
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	112, 438, 722
Fnu4HI	GCNGC	2 cut(s)	335, 501
FokI	GGATG	3 cut(s)	110, 287, 389
Fsp4HI	GCNGC	2 cut(s)	335, 501
FspBI	CTAG	2 cut(s)	339, 593
GluI	GCNGC	2 cut(s)	335, 501
HaeIII	GGCC	2 cut(s)	191, 390
HgaI	GACGC	1 cut(s)	671
Hin1II	CATG	3 cut(s)	116, 442, 726
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	5 cut(s)	127, 251, 481, 551, 578
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	520, 629
Hpy188III	TCNNGA	3 cut(s)	131, 439, 686
Hpy8I	GTNNAC	2 cut(s)	520, 629
HpyAV	CCTTC	3 cut(s)	172, 355, 568
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4V	TGCA	6 cut(s)	154, 301, 429, 545, 629, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 31, 188, 635
HpyF3I	CTNAG	5 cut(s)	26, 48, 57, 486, 504
Hsp92II	CATG	3 cut(s)	116, 442, 726
Kzo9I	GATC	2 cut(s)	491, 701
LmnI	GCTCC	2 cut(s)	52, 331
LpnPI	CCDG	5 cut(s)	74, 206, 287, 334, 555
Lsp1109I	GCAGC	2 cut(s)	321, 487
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	339, 593
MalI	GATC	2 cut(s)	493, 703
MboI	GATC	2 cut(s)	491, 701
MboII	GAAGA	9 cut(s)	91, 104, 157, 212, 217, 220, 250, 253, 301
MhlI	GDGCHC	2 cut(s)	631, 741
MluCI	AATT	3 cut(s)	246, 296, 371
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	2 cut(s)	165, 387
MseI	TTAA	3 cut(s)	264, 399, 536
MspA1I	CMGCKG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	682
MwoI	GCNNNNNNNGC	4 cut(s)	22, 31, 188, 635
NdeII	GATC	2 cut(s)	491, 701
NlaIII	CATG	3 cut(s)	116, 442, 726
NlaIV	GGNNCC	1 cut(s)	54
NmeAIII	GCCGAG	1 cut(s)	366
PagI	TCATGA	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	127, 251, 481, 578
PkrI	GCNGC	2 cut(s)	336, 502
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	156
PstNI	CAGNNNCTG	1 cut(s)	503
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
SaqAI	TTAA	3 cut(s)	264, 399, 536
SatI	GCNGC	2 cut(s)	335, 501
Sau3AI	GATC	2 cut(s)	491, 701
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	1 cut(s)	545
SduI	GDGCHC	2 cut(s)	631, 741
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	246, 296, 371
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	339, 593
TaaI	ACNGT	1 cut(s)	715
TaqI	TCGA	1 cut(s)	132
TasI	AATT	3 cut(s)	246, 296, 371
TatI	WGTACW	1 cut(s)	754
TfiI	GAWTC	4 cut(s)	127, 251, 481, 578
Tru1I	TTAA	3 cut(s)	264, 399, 536
Tru9I	TTAA	3 cut(s)	264, 399, 536
TseI	GCWGC	2 cut(s)	334, 500
TspDTI	ATGAA	4 cut(s)	57, 302, 393, 705
VneI	GTGCAC	1 cut(s)	627
XspI	CTAG	2 cut(s)	339, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.