Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007107

Physical Location & Seq

Genomic Coordinates Forward (+)

58040619 .. 58043062

Gene Structure 2444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGAGGCAGTCGGCGACCCAACCCGTCGATGAACCCACGGCCACCGCCACCATCAACGCCGCTCGACCACTTCTGCCACAATCCGCCCTCCCTGCCTTCTAACTCCCTCCAAGTGTTCCGCAAATTCCCCATCCCTCCCGCCAGAGAGATCACCGAATCCCTCAAATTCCTCGTCGCCCGCCTCGATTGGCAGTCGCTGAAGCTCAAGGACGACCTCCCTGTCATTCTGAAATCCCTAAAATGCCCTTTCAAGCTCAACAAGTCCATGATTCGAAACCCCACCGTCGATTCGCACCAGTGGCCGAATCTGCTCACTGTGATTCACTGGCTGTTCCAGCTCGTTCGTTACAACGATCACCTCGATCAAAATTCGAAGGCATTTCTGGACAACAACCCCGTGGGCAGTACATGTCGAGAGTTTGTGGGGAAGTTCAAGAGGCAGAGGGACGAATCGGAGGAGCAATTGAAGGTTCTGCAGCAGCACGCGGCGGAGCTGGAGGAGGAAGTGGAGGCATTGAGGTCGGAGCCGTCGCTTAAGGAGGCATTGGAGAGGGAGAAGAATATGCTGGATGAGGATGTGAGCAAGTTTCGTAAGATGATTGAGAATCTCGACAAGAATGTGAAGAAGTTGGAGAAGGCTTTGGAGGGGAAAGATAGGGCTTTGGAGGCCAAGAGGGAAGAGAAGAAGAGGATTTTGCAGGAGAATAAGGAGTTGAAGAAGAGAGTTGAATCGCAGAGTTTTAATGAGAGGGATAGGAATATTGGGGAAGCGAAGCTGGCTAGGAATGTGTGGGAGGAGAAGGTTTGGGATTTGGATAACATGCTCGGCCCCAAGGTTAAGGAGCTGGAGGCTTTGGCCAATGGCCATGGAGTGCAACCAAGTTATGAGGAGGTTTGTCATCTGTTAAAACTTTGTAATGGCTTCCAGTATGTATTGAATCCTAAGGGGTCAGCAAATGCTGAGGTGATGGGGGTTGACAATAAATCAACTTTAAAGCCTGCACTTGACTCATATGCACTTTCTGCTGATATAGAGGAAAAAATAAATCATATATCAACATATCTTTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndc80_HEC

Protein Analysis

358

Amino Acids

41.28

Weight (kDa)

8.41

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndc80_HEC	PF03801	43 - 120	4.4e-11	HEC/Ndc80p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54630
fragaria_vesca	FvH4_5g35831
malus_domestica	MD08G1226900.v1.1 MD15G1419200.v1.1
prunus_persica	Prupe.1G564000_v2.0.a1
pyrus_communis	pycom08g19790 pycom15g37210
rosa_chinensis	RchiOBHm_Chr5g0046031
rosa_laevigata	RLG00000034393
rosa_multiflora	Rmu_co8491665.1_g000002 Rmu_sc0001035.1_g000029 Rmu_sc0001212.1_g000011
rosa_roxburghii	Rroxscaffold_1G00035270 Rroxscaffold_1G00035320 Rroxscaffold_3G00224020
rosa_rugosa	Rorug05G0226200 Rorug07G0304000
rosa_samantha	Rh5AG306800 Rh5BG315500 Rh5CG341700 Rh5CG342000 Rh5DG325500
rosa_wichuraiana	Rw0G011960 Rw5G028710 Rw7G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	64
AccII	CGCG	1 cut(s)	488
AciI	CCGC	8 cut(s)	47, 62, 86, 121, 141, 181, 488, 491
AcoI	YGGCCR	4 cut(s)	41, 302, 858, 865
AcsI	RAATTY	3 cut(s)	125, 167, 370
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	6 cut(s)	253, 436, 469, 718, 731, 940
AluBI	AGCT	6 cut(s)	205, 256, 340, 496, 778, 847
AluI	AGCT	6 cut(s)	205, 256, 340, 496, 778, 847
AlwNI	CAGNNNCTG	1 cut(s)	199
AoxI	GGCC	6 cut(s)	41, 302, 669, 829, 858, 865
ApeKI	GCWGC	2 cut(s)	478, 481
ApoI	RAATTY	3 cut(s)	125, 167, 370
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
AspS9I	GGNCC	1 cut(s)	830
AsuHPI	GGTGA	3 cut(s)	145, 350, 979
AsuII	TTCGAA	2 cut(s)	274, 374
AxyI	CCTNAGG	1 cut(s)	945
BalI	TGGCCA	2 cut(s)	860, 867
BbvCI	CCTCAGC	1 cut(s)	963
BbvI	GCAGC	2 cut(s)	490, 493
BccI	CCATC	3 cut(s)	61, 140, 964
BceAI	ACGGC	2 cut(s)	56, 514
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	1 cut(s)	476
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	4 cut(s)	62, 479, 482, 489
BlsI	GCNGC	4 cut(s)	63, 480, 483, 490
BmgT120I	GGNCC	1 cut(s)	830
BmiI	GGNNCC	2 cut(s)	528, 832
BpmI	CTGGAG	2 cut(s)	518, 869
Bpu10I	CCTNAGC	1 cut(s)	963
Bpu14I	TTCGAA	2 cut(s)	274, 374
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	38, 399, 834, 868
Bse1I	ACTGG	3 cut(s)	298, 332, 928
Bse21I	CCTNAGG	1 cut(s)	945
BseDI	CCNNGG	4 cut(s)	38, 399, 834, 868
BseGI	GGATG	3 cut(s)	132, 577, 583
BseMII	CTCAG	1 cut(s)	954
BseNI	ACTGG	3 cut(s)	298, 332, 928
BseRI	GAGGAG	4 cut(s)	473, 515, 812, 905
BseXI	GCAGC	2 cut(s)	490, 493
BsgI	GTGCAG	1 cut(s)	987
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	6 cut(s)	43, 304, 671, 831, 860, 867
BslFI	GGGAC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	6 cut(s)	43, 304, 671, 831, 860, 867
Bsp119I	TTCGAA	2 cut(s)	274, 374
Bsp143I	GATC	3 cut(s)	150, 355, 364
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	8 cut(s)	47, 62, 86, 121, 141, 181, 488, 491
BspANI	GGCC	6 cut(s)	43, 304, 671, 831, 860, 867
BspCNI	CTCAG	1 cut(s)	955
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	2 cut(s)	528, 832
BspMAI	CTGCAG	1 cut(s)	480
BspT104I	TTCGAA	2 cut(s)	274, 374
BspTI	CTTAAG	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	298, 332, 928
BssECI	CCNNGG	4 cut(s)	38, 399, 834, 868
BssMI	GATC	3 cut(s)	150, 355, 364
BssT1I	CCWWGG	2 cut(s)	834, 868
Bst4CI	ACNGT	2 cut(s)	286, 319
Bst6I	CTCTTC	3 cut(s)	675, 683, 716
BstAFI	CTTAAG	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstBI	TTCGAA	2 cut(s)	274, 374
BstC8I	GCNNGC	4 cut(s)	181, 486, 780, 1002
BstDEI	CTNAG	2 cut(s)	945, 963
BstDSI	CCRYGG	3 cut(s)	38, 399, 868
BstF5I	GGATG	3 cut(s)	132, 577, 583
BstFNI	CGCG	1 cut(s)	488
BstKTI	GATC	3 cut(s)	153, 358, 367
BstMBI	GATC	3 cut(s)	150, 355, 364
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 301, 310, 337, 668, 779, 1025
BstNSI	RCATGY	2 cut(s)	414, 826
BstSFI	CTRYAG	1 cut(s)	476
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	2 cut(s)	490, 493
Bsu36I	CCTNAGG	1 cut(s)	945
BsuRI	GGCC	6 cut(s)	43, 304, 671, 831, 860, 867
BtgI	CCRYGG	3 cut(s)	38, 399, 868
BtsCI	GGATG	3 cut(s)	132, 577, 583
BtsIMutI	CAGTG	3 cut(s)	305, 315, 325
Cac8I	GCNNGC	4 cut(s)	181, 486, 780, 1002
CaiI	CAGNNNCTG	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	830
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	4 cut(s)	268, 411, 823, 869
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	945, 963
DpnI	GATC	3 cut(s)	152, 357, 366
DpnII	GATC	3 cut(s)	150, 355, 364
DraI	TTTAAA	1 cut(s)	996
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	4 cut(s)	41, 302, 858, 865
Eam1104I	CTCTTC	3 cut(s)	675, 683, 716
EarI	CTCTTC	3 cut(s)	675, 683, 716
EciI	GGCGGA	2 cut(s)	75, 506
Eco130I	CCWWGG	2 cut(s)	834, 868
Eco57I	CTGAAG	1 cut(s)	221
Eco81I	CCTNAGG	1 cut(s)	945
EcoT14I	CCWWGG	2 cut(s)	834, 868
ErhI	CCWWGG	2 cut(s)	834, 868
FaeI	CATG	4 cut(s)	271, 414, 826, 872
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	267, 410, 822, 868
FauI	CCCGC	2 cut(s)	148, 188
FauNDI	CATATG	1 cut(s)	1015
Fnu4HI	GCNGC	4 cut(s)	62, 479, 482, 489
FokI	GGATG	3 cut(s)	119, 584, 590
Fsp4HI	GCNGC	4 cut(s)	62, 479, 482, 489
FspBI	CTAG	1 cut(s)	783
GluI	GCNGC	4 cut(s)	62, 479, 482, 489
GsuI	CTGGAG	2 cut(s)	518, 869
HaeIII	GGCC	6 cut(s)	43, 304, 671, 831, 860, 867
Hin1II	CATG	4 cut(s)	271, 414, 826, 872
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HphI	GGTGA	3 cut(s)	145, 350, 979
Hpy166II	GTNNAC	1 cut(s)	979
Hpy188I	TCNGA	3 cut(s)	231, 457, 526
Hpy188III	TCNNGA	4 cut(s)	386, 416, 436, 611
Hpy8I	GTNNAC	1 cut(s)	979
Hpy99I	CGWCG	4 cut(s)	31, 179, 290, 535
HpyAV	CCTTC	5 cut(s)	108, 370, 463, 631, 796
HpyCH4III	ACNGT	2 cut(s)	286, 319
HpyCH4V	TGCA	5 cut(s)	478, 700, 877, 1004, 1019
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 301, 310, 337, 668, 779, 1025
HpyF3I	CTNAG	2 cut(s)	945, 963
Hsp92II	CATG	4 cut(s)	271, 414, 826, 872
Kzo9I	GATC	3 cut(s)	150, 355, 364
LmnI	GCTCC	4 cut(s)	460, 493, 526, 844
Lsp1109I	GCAGC	2 cut(s)	490, 493
MaeI	CTAG	1 cut(s)	783
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	3 cut(s)	152, 357, 366
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	3 cut(s)	150, 355, 364
MboII	GAAGA	7 cut(s)	571, 637, 692, 697, 700, 730, 733
MfeI	CAATTG	1 cut(s)	464
MlsI	TGGCCA	2 cut(s)	860, 867
MluCI	AATT	4 cut(s)	125, 167, 370, 464
MluNI	TGGCCA	2 cut(s)	860, 867
MlyI	GAGTC	1 cut(s)	1004
MmeI	TCCRAC	2 cut(s)	504, 612
Mox20I	TGGCCA	2 cut(s)	860, 867
MscI	TGGCCA	2 cut(s)	860, 867
MseI	TTAA	5 cut(s)	537, 744, 840, 908, 995
Msp20I	TGGCCA	2 cut(s)	860, 867
MspCI	CTTAAG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	7 cut(s)	94, 301, 310, 337, 668, 779, 1025
NcoI	CCATGG	1 cut(s)	868
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	3 cut(s)	150, 355, 364
NlaIII	CATG	4 cut(s)	271, 414, 826, 872
NlaIV	GGNNCC	2 cut(s)	528, 832
NmeAIII	GCCGAG	1 cut(s)	807
NspI	RCATGY	2 cut(s)	414, 826
NspV	TTCGAA	2 cut(s)	274, 374
PciI	ACATGT	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 360
PfeI	GAWTC	9 cut(s)	158, 271, 290, 307, 322, 452, 607, 731, 940
PkrI	GCNGC	4 cut(s)	63, 480, 483, 490
PleI	GAGTC	1 cut(s)	1004
PpsI	GAGTC	1 cut(s)	1004
PscI	ACATGT	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	528, 832
PspPI	GGNCC	1 cut(s)	830
PstI	CTGCAG	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	5 cut(s)	537, 744, 840, 908, 995
SatI	GCNGC	4 cut(s)	62, 479, 482, 489
Sau3AI	GATC	3 cut(s)	150, 355, 364
Sau96I	GGNCC	1 cut(s)	830
SchI	GAGTC	1 cut(s)	1004
SfcI	CTRYAG	1 cut(s)	476
SfuI	TTCGAA	2 cut(s)	274, 374
SmlI	CTYRAG	2 cut(s)	206, 536
SmoI	CTYRAG	2 cut(s)	206, 536
Sse9I	AATT	4 cut(s)	125, 167, 370, 464
SsiI	CCGC	8 cut(s)	47, 62, 86, 121, 141, 181, 488, 491
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	1 cut(s)	783
StyI	CCWWGG	2 cut(s)	834, 868
TaaI	ACNGT	2 cut(s)	286, 319
TaqI	TCGA	9 cut(s)	29, 66, 186, 274, 288, 363, 374, 415, 612
TasI	AATT	4 cut(s)	125, 167, 370, 464
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	2 cut(s)	64, 491
TfiI	GAWTC	9 cut(s)	158, 271, 290, 307, 322, 452, 607, 731, 940
Tru1I	TTAA	5 cut(s)	537, 744, 840, 908, 995
Tru9I	TTAA	5 cut(s)	537, 744, 840, 908, 995
TscAI	CASTG	3 cut(s)	305, 322, 332
TseI	GCWGC	2 cut(s)	478, 481
TspDTI	ATGAA	2 cut(s)	47, 1059
TspRI	CASTG	3 cut(s)	305, 322, 332
Vha464I	CTTAAG	1 cut(s)	536
XapI	RAATTY	3 cut(s)	125, 167, 370
XceI	RCATGY	2 cut(s)	414, 826
XspI	CTAG	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.