Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001212.1

Orthogroup ID

OG0007107

Physical Location & Seq

Genomic Coordinates Forward (+)

58223 .. 58831

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001212.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgagaggcagtcggcgacccaagctgaggaggcaagatgatgaagctgaggaggtggatcgtgagtttgtggggatgttcgagaggcagagggatgaatcggcggcagagctggtggcggaagtggaggccttgaggtctgagctgtcgcctaaggaggcattggagagggagaagagtatgctggaagaggatgtgagcaagttccatgagatgattgagaatctcgacaagaatgtgaagaaactgcagaaagttttggggaaagagaaggcgttggaggccaagaaggaagagaagaagatgattttacaggagaatgaggagttgaagaagagaattgaatcgcagagttttaatgagagggatgtggagagaatgaagagggaattgcaggctgtggagagggacattggggaagcggagctggctagaaatgtctgggaggaggagaaggtttgggaattggatgaaacgctcggcccaaaggttaaggagttggaggctttggcaatggagtgcaaccaagtcatgaggagggttgtcatccctccctgtaatttgattttttggtttccattatatttgatttgttgtgtggttagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndc80_HEC

Protein Analysis

202

Amino Acids

23.89

Weight (kDa)

5.02

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54630
fragaria_vesca	FvH4_5g35831
malus_domestica	MD08G1226900.v1.1 MD15G1419200.v1.1
prunus_persica	Prupe.1G564000_v2.0.a1
pyrus_communis	pycom08g19790 pycom15g37210
rosa_chinensis	RchiOBHm_Chr5g0046031
rosa_laevigata	RLG00000034393
rosa_multiflora	Rmu_co8491665.1_g000002 Rmu_sc0001035.1_g000029 Rmu_sc0001212.1_g000011
rosa_roxburghii	Rroxscaffold_1G00035270 Rroxscaffold_1G00035320 Rroxscaffold_3G00224020
rosa_rugosa	Rorug05G0226200 Rorug07G0304000
rosa_samantha	Rh5AG306800 Rh5BG315500 Rh5CG341700 Rh5CG342000 Rh5DG325500
rosa_wichuraiana	Rw0G011960 Rw5G028710 Rw7G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	104, 119, 422
AclWI	GGATC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	331, 344
AluBI	AGCT	5 cut(s)	25, 47, 112, 145, 427
AluI	AGCT	5 cut(s)	25, 47, 112, 145, 427
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	3 cut(s)	129, 282, 481
AspS9I	GGNCC	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	153
BbvCI	CCTCAGC	2 cut(s)	26, 48
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	482
Bpu10I	CCTNAGC	2 cut(s)	26, 48
BpuEI	CTTGAG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse21I	CCTNAGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	519
BseGI	GGATG	6 cut(s)	81, 100, 199, 373, 475, 546
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	3 cut(s)	17, 39, 132
BseRI	GAGGAG	6 cut(s)	43, 65, 338, 461, 464, 550
BshFI	GGCC	3 cut(s)	131, 284, 483
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	3 cut(s)	131, 284, 483
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	3 cut(s)	104, 119, 422
BspANI	GGCC	3 cut(s)	131, 284, 483
BspCNI	CTCAG	3 cut(s)	18, 40, 133
BspHI	TCATGA	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	252
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	519
BssMI	GATC	1 cut(s)	58
Bst6I	CTCTTC	5 cut(s)	170, 183, 288, 329, 377
BstC8I	GCNNGC	2 cut(s)	396, 429
BstDEI	CTNAG	4 cut(s)	26, 48, 141, 153
BstF5I	GGATG	6 cut(s)	81, 100, 199, 373, 475, 546
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 31, 281, 428
BstSFI	CTRYAG	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	131, 284, 483
BtsCI	GGATG	6 cut(s)	81, 100, 199, 373, 475, 546
Cac8I	GCNNGC	2 cut(s)	396, 429
CciI	TCATGA	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	482
CviAII	CATG	2 cut(s)	209, 532
DdeI	CTNAG	4 cut(s)	26, 48, 141, 153
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eam1104I	CTCTTC	5 cut(s)	170, 183, 288, 329, 377
EarI	CTCTTC	5 cut(s)	170, 183, 288, 329, 377
EciI	GGCGGA	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	212, 535
FaiI	YATR	4 cut(s)	182, 210, 533, 583
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	208, 531
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	6 cut(s)	88, 107, 206, 380, 482, 533
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	131, 284, 483
Hin1II	CATG	2 cut(s)	212, 535
HinfI	GANTC	3 cut(s)	98, 223, 344
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	4 cut(s)	62, 82, 227, 532
HpyAV	CCTTC	3 cut(s)	265, 283, 448
HpyCH4V	TGCA	3 cut(s)	250, 394, 522
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 31, 281, 428
HpyF3I	CTNAG	4 cut(s)	26, 48, 141, 153
Hsp92II	CATG	2 cut(s)	212, 535
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	7 cut(s)	98, 170, 299, 380, 413, 427, 568
MaeI	CTAG	1 cut(s)	432
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	9 cut(s)	187, 200, 253, 305, 310, 313, 343, 346, 394
MluCI	AATT	4 cut(s)	339, 389, 464, 559
MmeI	TCCRAC	2 cut(s)	258, 480
MseI	TTAA	2 cut(s)	357, 492
MwoI	GCNNNNNNNGC	4 cut(s)	22, 31, 281, 428
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	212, 535
NmeAIII	GCCGAG	1 cut(s)	459
PagI	TCATGA	1 cut(s)	531
PceI	AGGCCT	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	98, 223, 344
PkrI	GCNGC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	357, 492
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	482
SetI	ASST	9 cut(s)	27, 49, 57, 114, 140, 147, 429, 459, 492
SfcI	CTRYAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	4 cut(s)	339, 389, 464, 559
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	3 cut(s)	104, 119, 422
SspMI	CTAG	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	81, 228
TasI	AATT	4 cut(s)	339, 389, 464, 559
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	3 cut(s)	98, 223, 344
Tru1I	TTAA	2 cut(s)	357, 492
Tru9I	TTAA	2 cut(s)	357, 492
TspDTI	ATGAA	4 cut(s)	57, 111, 395, 486
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.