Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00530

Orthogroup ID

OG0007107

Physical Location & Seq

Genomic Coordinates Forward (+)

1929 .. 3936

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

GACGACCTCCCTGTCATTCTGAAATCCCTAAAATGCCCTTTCAAGCTCAACAAGTCCATGATTCGAAACCCCACCGTCGATTCGCACCAGTGGCCGAATCTGCTCACTGTGATTCACCGGTTGTTCCAGCTCGTTCATTACAACGATCACCTCGATCAGAATTCGAAGGCATTTCTGGACAACAACCCCGTGGGCAGTACATGTCGAGAGTTTGTGGGGAAGTTCAAGAGGCAGAGGGACGAATCGGAGGAGCAATTAAAGGTTCTGCAGCAGCACGCGGCGGAGCTGGAGGCATTGAGGTCGGAGCCGTCGCTTAAGGAGGCATTGGCGAGGGAGAAGAATATGCTGGATGAGGATGTGAGCAAGTTTCGTAAGATGATTGAGAATCTCGACAAGAATGTGAAGAAGTTGGAGAAGGCTTTGGAGGGGAAAGATAGGGCTTTGGAGGCCAAGAGGGAAGAGGAGAAGAGGATTTTGCAGGAGAATAAGGAGTTGAAGAAGAGAGTTGAATCGCAGAGTTTTAATGAGAGGGATAGGAATATTGGGGAAGCGAAGCTGGCTAGGAATGTGTGGGAGGAGAAGGTTTGGGATTTGGATAACATGCTCGGCCCCAAGGTTAAGGAGCTGGAGGCTTTGGCCAATGGCCATGGAGTGCAACCAAGTTATGAGGAGGTTTGTCATCTGTTAAAACTTTGTAATGGCTTCCAGTATGTATTGAATCCTAAGGGGTCAGCAAATGCTGAGGTGATGGGGGTTGACAATAAATCAACTTTAAAGCCTGCACTTGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndc80_HEC

Protein Analysis

264

Amino Acids

30.44

Weight (kDa)

7.21

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54630
fragaria_vesca	FvH4_5g35831
malus_domestica	MD08G1226900.v1.1 MD15G1419200.v1.1
prunus_persica	Prupe.1G564000_v2.0.a1
pyrus_communis	pycom08g19790 pycom15g37210
rosa_chinensis	RchiOBHm_Chr5g0046031
rosa_laevigata	RLG00000034393
rosa_multiflora	Rmu_co8491665.1_g000002 Rmu_sc0001035.1_g000029 Rmu_sc0001212.1_g000011
rosa_roxburghii	Rroxscaffold_1G00035270 Rroxscaffold_1G00035320 Rroxscaffold_3G00224020
rosa_rugosa	Rorug05G0226200 Rorug07G0304000
rosa_samantha	Rh5AG306800 Rh5BG315500 Rh5CG341700 Rh5CG342000 Rh5DG325500
rosa_wichuraiana	Rw0G011960 Rw5G028710 Rw7G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AccII	CGCG	1 cut(s)	278
AciI	CCGC	2 cut(s)	278, 281
AcoI	YGGCCR	3 cut(s)	92, 636, 643
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	1 cut(s)	199
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	200
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	5 cut(s)	43, 226, 496, 509, 718
AluBI	AGCT	5 cut(s)	46, 130, 286, 556, 625
AluI	AGCT	5 cut(s)	46, 130, 286, 556, 625
AoxI	GGCC	5 cut(s)	92, 447, 607, 636, 643
ApeKI	GCWGC	2 cut(s)	268, 271
ApoI	RAATTY	1 cut(s)	160
AsiGI	ACCGGT	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	107, 140, 757
AsuII	TTCGAA	2 cut(s)	64, 164
AxyI	CCTNAGG	1 cut(s)	723
BalI	TGGCCA	2 cut(s)	638, 645
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	2 cut(s)	280, 283
BccI	CCATC	1 cut(s)	742
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	266
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	3 cut(s)	269, 272, 279
BlsI	GCNGC	3 cut(s)	270, 273, 280
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	306, 610
BpmI	CTGGAG	2 cut(s)	308, 647
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu14I	TTCGAA	2 cut(s)	64, 164
BsaJI	CCNNGG	3 cut(s)	189, 612, 646
BsaWI	WCCGGW	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	88, 706
Bse21I	CCTNAGG	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	189, 612, 646
BseGI	GGATG	2 cut(s)	355, 361
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	2 cut(s)	88, 706
BseRI	GAGGAG	4 cut(s)	263, 476, 590, 683
BseXI	GCAGC	2 cut(s)	280, 283
BsgI	GTGCAG	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	5 cut(s)	94, 449, 609, 638, 645
BshTI	ACCGGT	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	5 cut(s)	94, 449, 609, 638, 645
Bsp119I	TTCGAA	2 cut(s)	64, 164
Bsp143I	GATC	2 cut(s)	145, 154
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	2 cut(s)	278, 281
BspANI	GGCC	5 cut(s)	94, 449, 609, 638, 645
BspCNI	CTCAG	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	306, 610
BspMAI	CTGCAG	1 cut(s)	270
BspT104I	TTCGAA	2 cut(s)	64, 164
BspTI	CTTAAG	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	88, 706
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	189, 612, 646
BssMI	GATC	2 cut(s)	145, 154
BssT1I	CCWWGG	2 cut(s)	612, 646
Bst4CI	ACNGT	2 cut(s)	76, 109
Bst6I	CTCTTC	3 cut(s)	453, 461, 494
BstAFI	CTTAAG	1 cut(s)	314
BstBI	TTCGAA	2 cut(s)	64, 164
BstC8I	GCNNGC	3 cut(s)	276, 558, 780
BstDEI	CTNAG	2 cut(s)	723, 741
BstDSI	CCRYGG	2 cut(s)	189, 646
BstF5I	GGATG	2 cut(s)	355, 361
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	2 cut(s)	148, 157
BstMBI	GATC	2 cut(s)	145, 154
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 100, 446, 557
BstNSI	RCATGY	2 cut(s)	204, 604
BstSFI	CTRYAG	1 cut(s)	266
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	280, 283
Bsu36I	CCTNAGG	1 cut(s)	723
BsuRI	GGCC	5 cut(s)	94, 449, 609, 638, 645
BtgI	CCRYGG	2 cut(s)	189, 646
BtsCI	GGATG	2 cut(s)	355, 361
BtsIMutI	CAGTG	2 cut(s)	95, 105
Cac8I	GCNNGC	3 cut(s)	276, 558, 780
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	198
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	4 cut(s)	58, 201, 601, 647
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	2 cut(s)	723, 741
DpnI	GATC	2 cut(s)	147, 156
DpnII	GATC	2 cut(s)	145, 154
DraI	TTTAAA	1 cut(s)	774
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	3 cut(s)	92, 636, 643
Eam1104I	CTCTTC	3 cut(s)	453, 461, 494
EarI	CTCTTC	3 cut(s)	453, 461, 494
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	612, 646
Eco81I	CCTNAGG	1 cut(s)	723
EcoRI	GAATTC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	612, 646
ErhI	CCWWGG	2 cut(s)	612, 646
FaeI	CATG	4 cut(s)	61, 204, 604, 650
FaiI	YATR	8 cut(s)	59, 202, 344, 602, 648, 666, 711, 793
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	4 cut(s)	57, 200, 600, 646
Fnu4HI	GCNGC	3 cut(s)	269, 272, 279
FokI	GGATG	2 cut(s)	362, 368
Fsp4HI	GCNGC	3 cut(s)	269, 272, 279
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	3 cut(s)	269, 272, 279
GsuI	CTGGAG	2 cut(s)	308, 647
HaeIII	GGCC	5 cut(s)	94, 449, 609, 638, 645
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	4 cut(s)	61, 204, 604, 650
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	9 cut(s)	61, 80, 97, 112, 242, 385, 509, 718, 788
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	3 cut(s)	107, 140, 757
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	4 cut(s)	21, 159, 247, 304
Hpy188III	TCNNGA	4 cut(s)	176, 206, 226, 389
Hpy8I	GTNNAC	1 cut(s)	757
Hpy99I	CGWCG	2 cut(s)	80, 313
HpyAV	CCTTC	3 cut(s)	160, 409, 574
HpyCH4III	ACNGT	2 cut(s)	76, 109
HpyCH4V	TGCA	4 cut(s)	268, 478, 655, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 100, 446, 557
HpyF3I	CTNAG	2 cut(s)	723, 741
Hsp92II	CATG	4 cut(s)	61, 204, 604, 650
Kzo9I	GATC	2 cut(s)	145, 154
LmnI	GCTCC	4 cut(s)	250, 283, 304, 622
Lsp1109I	GCAGC	2 cut(s)	280, 283
MaeI	CTAG	1 cut(s)	561
MalI	GATC	2 cut(s)	147, 156
MboI	GATC	2 cut(s)	145, 154
MboII	GAAGA	6 cut(s)	349, 415, 470, 478, 508, 511
MlsI	TGGCCA	2 cut(s)	638, 645
MluCI	AATT	2 cut(s)	160, 254
MluNI	TGGCCA	2 cut(s)	638, 645
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	2 cut(s)	282, 390
Mox20I	TGGCCA	2 cut(s)	638, 645
MscI	TGGCCA	2 cut(s)	638, 645
MseI	TTAA	6 cut(s)	257, 315, 522, 618, 686, 773
Msp20I	TGGCCA	2 cut(s)	638, 645
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	4 cut(s)	91, 100, 446, 557
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	2 cut(s)	145, 154
NlaIII	CATG	4 cut(s)	61, 204, 604, 650
NlaIV	GGNNCC	2 cut(s)	306, 610
NmeAIII	GCCGAG	1 cut(s)	585
NspI	RCATGY	2 cut(s)	204, 604
NspV	TTCGAA	2 cut(s)	64, 164
PciI	ACATGT	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	8 cut(s)	61, 80, 97, 112, 242, 385, 509, 718
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	270, 273, 280
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PscI	ACATGT	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	306, 610
PspPI	GGNCC	1 cut(s)	608
PstI	CTGCAG	1 cut(s)	270
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SaqAI	TTAA	6 cut(s)	257, 315, 522, 618, 686, 773
SatI	GCNGC	3 cut(s)	269, 272, 279
Sau3AI	GATC	2 cut(s)	145, 154
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	1 cut(s)	782
SfcI	CTRYAG	1 cut(s)	266
SfuI	TTCGAA	2 cut(s)	64, 164
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	160, 254
SsiI	CCGC	2 cut(s)	278, 281
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	561
StyI	CCWWGG	2 cut(s)	612, 646
TaaI	ACNGT	2 cut(s)	76, 109
TaqI	TCGA	6 cut(s)	64, 78, 153, 164, 205, 390
TasI	AATT	2 cut(s)	160, 254
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	8 cut(s)	61, 80, 97, 112, 242, 385, 509, 718
Tru1I	TTAA	6 cut(s)	257, 315, 522, 618, 686, 773
Tru9I	TTAA	6 cut(s)	257, 315, 522, 618, 686, 773
TscAI	CASTG	2 cut(s)	95, 112
TseI	GCWGC	2 cut(s)	268, 271
TspDTI	ATGAA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	95, 112
Vha464I	CTTAAG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	2 cut(s)	204, 604
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.