Rroxscaffold_1G00036630

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003833
Physical Location & Seq
Reverse (-)
53468079 .. 53471630
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036630.1

Sequence Viewer

Length: 363 bp
ATGGAAAGCGATGTGCTTCATATGTTAGACTCACATTTTAATAACAAGATGCATTTTGGGATGGAAGCCCAAGAAACCAAATCGTGCGAGTTGGGCCCAAAGCGGACAATATTTTGTTATGTAGATTGGGCTATAAGACATGCAAAAATACAATGGAAAGAATTTCATAGAAAGCGAGTGGCTGATGCTATGAATGATTTTGCGTCAACCTTGCATCGATTATGGGAAAGGCGGGACGAGGCGCAACATCAAAGGATTAAAGAAGAAAACGTCTCCAAGGATATAGAGAACCGACTTAAGAAAATGGGCATGGAGAGGATGAGAAGGGAGCATGGAGAGGATGAGAAGGGAGCATGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

120

Amino Acids

14.54

Weight (kDa)

7.87

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 103, 232
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 1 cut(s) 161
AflII CTTAAG 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 2 cut(s) 94, 356
ApaI GGGCCC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 94, 95
BaeGI GKGCMC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 358
BanII GRGCYC 1 cut(s) 98
BccI CCATC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 277
BfrI CTTAAG 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 94, 95
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 3 cut(s) 39, 175, 223
Bsa29I ATCGAT 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 3 cut(s) 66, 324, 346
BseSI GKGCMC 1 cut(s) 98
BshFI GGCC 2 cut(s) 96, 358
BshVI ATCGAT 1 cut(s) 217
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 2 cut(s) 96, 358
Bsp120I GGGCCC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 98
BspACI CCGC 2 cut(s) 103, 232
BspANI GGCC 2 cut(s) 96, 358
BspDI ATCGAT 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 276
BstAFI CTTAAG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 66, 324, 346
BstHHI GCGC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 143
BstSLI GKGCMC 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 217
BsuRI GGCC 2 cut(s) 96, 358
BsuTUI ATCGAT 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 3 cut(s) 66, 324, 346
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 94, 95
ClaI ATCGAT 1 cut(s) 217
CseI GACGC 1 cut(s) 192
CviAII CATG 5 cut(s) 140, 310, 332, 354, 360
CviJI RGCY 5 cut(s) 68, 96, 131, 182, 358
CviKI_1 RGCY 5 cut(s) 68, 96, 131, 182, 358
EaeI YGGCCR 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 5 cut(s) 143, 313, 335, 357, 363
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 139, 309, 331, 353, 359
FauI CCCGC 1 cut(s) 225
FauNDI CATATG 1 cut(s) 21
FokI GGATG 3 cut(s) 73, 331, 353
FriOI GRGCYC 1 cut(s) 98
GlaI GCGC 1 cut(s) 243
HaeIII GGCC 2 cut(s) 96, 358
HgaI GACGC 1 cut(s) 192
HhaI GCGC 1 cut(s) 244
Hin1II CATG 5 cut(s) 143, 313, 335, 357, 363
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 318, 340
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 52, 143, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 5 cut(s) 143, 313, 335, 357, 363
HspAI GCGC 1 cut(s) 242
LmnI GCTCC 2 cut(s) 328, 350
LweI GCATC 3 cut(s) 39, 175, 223
MaeII ACGT 1 cut(s) 270
MboII GAAGA 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 358
MluCI AATT 1 cut(s) 161
MluNI TGGCCA 1 cut(s) 358
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 3 cut(s) 232, 309, 331
Mox20I TGGCCA 1 cut(s) 358
Mph1103I ATGCAT 1 cut(s) 54
MscI TGGCCA 1 cut(s) 358
MseI TTAA 3 cut(s) 39, 258, 297
MslI CAYNNNNRTG 1 cut(s) 358
Msp20I TGGCCA 1 cut(s) 358
MspCI CTTAAG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeI CATATG 1 cut(s) 21
NlaIII CATG 5 cut(s) 143, 313, 335, 357, 363
NlaIV GGNNCC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 1 cut(s) 143
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 96
PspOMI GGGCCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 94, 95
RseI CAYNNNNRTG 1 cut(s) 358
SaqAI TTAA 3 cut(s) 39, 258, 297
Sau96I GGNCC 2 cut(s) 94, 95
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 98
SetI ASST 2 cut(s) 212, 273
SfaNI GCATC 3 cut(s) 39, 175, 223
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 161
SsiI CCGC 2 cut(s) 103, 232
SspI AATATT 1 cut(s) 111
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 217
TasI AATT 1 cut(s) 161
Tru1I TTAA 3 cut(s) 39, 258, 297
Tru9I TTAA 3 cut(s) 39, 258, 297
TspDTI ATGAA 3 cut(s) 8, 155, 206
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.