Rorug06G0258000

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003833
Physical Location & Seq
Forward (+)
40502241 .. 40502750
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0258000.1

Sequence Viewer

Length: 417 bp
ATGGATTCAATACAAGGCAATGATCAAAAGCTTCACACTTTTTGGGGGGAAATTACAGAGTACTATCATCAGTACAAGTCTTTTGATAGTGATCGTTCACAATCGATGCTGACACAACGGTGGGGAAAAATACAAAATGTGGTGAACAAATTTTCAGGATGTTTTTCAGCTATAAATAAAAGACGTGAAAGTGGGAAGACTGAACAGGACAAGATTGCAGATGCAAAGAAGATGTTTGAAGCACAAGAAAAGTTCTGGTTCAATCTTGATCATGCTTGGATTTTGTTGAGGCACCACCCAAAGTGGATACAATTAATGCAAGAGCTGGACAACAAGAAAAGAAAGAAAAGATCTAAATCTGGTCTATCTAATATCTCATCATCTTCAACTACAGGCATGCATTCACATAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

138

Amino Acids

16.42

Weight (kDa)

9.74

Isoelectric Point (pI)

65.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 87 - 130 1.9e-07 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 291
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 2 cut(s) 62, 74
AgsI TTSAA 4 cut(s) 9, 239, 262, 387
AjiI CACGTC 1 cut(s) 185
AleI CACNNNNGTG 1 cut(s) 118
AluBI AGCT 3 cut(s) 31, 170, 325
AluI AGCT 3 cut(s) 31, 170, 325
ApoI RAATTY 1 cut(s) 149
AseI ATTAAT 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 154
BanI GGYRCC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 203
BciVI GTATCC 1 cut(s) 300
BclI TGATCA 2 cut(s) 22, 268
BfmI CTRYAG 1 cut(s) 390
BfuI GTATCC 1 cut(s) 300
BglII AGATCT 1 cut(s) 350
BmcAI AGTACT 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 293
BmsI GCATC 2 cut(s) 96, 211
BpiI GAAGAC 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 104
BsaBI GATNNNNATC 2 cut(s) 90, 355
Bse3DI GCAATG 1 cut(s) 25
Bse8I GATNNNNATC 2 cut(s) 90, 355
BseCI ATCGAT 1 cut(s) 104
BseGI GGATG 1 cut(s) 164
BseJI GATNNNNATC 2 cut(s) 90, 355
BseMI GCAATG 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 291
BshVI ATCGAT 1 cut(s) 104
BsmI GAATGC 1 cut(s) 400
Bsp143I GATC 4 cut(s) 22, 91, 268, 350
BspDI ATCGAT 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 25
BssMI GATC 4 cut(s) 22, 91, 268, 350
Bst4CI ACNGT 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 398
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 4 cut(s) 25, 94, 271, 353
BstMBI GATC 4 cut(s) 22, 91, 268, 350
BstNSI RCATGY 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 104
BsuI GTATCC 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 104
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 104
Csp6I GTAC 2 cut(s) 61, 73
CviAII CATG 2 cut(s) 272, 397
CviJI RGCY 3 cut(s) 31, 170, 325
CviKI_1 RGCY 3 cut(s) 31, 170, 325
CviQI GTAC 2 cut(s) 61, 73
DpnI GATC 4 cut(s) 24, 93, 270, 352
DpnII GATC 4 cut(s) 22, 91, 268, 350
EcoT22I ATGCAT 1 cut(s) 402
FaeI CATG 2 cut(s) 275, 400
FaiI YATR 4 cut(s) 173, 273, 398, 408
FatI CATG 2 cut(s) 271, 396
FbaI TGATCA 2 cut(s) 22, 268
FokI GGATG 1 cut(s) 171
Hin1II CATG 2 cut(s) 275, 400
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 98, 145
Hpy188III TCNNGA 2 cut(s) 156, 266
Hpy8I GTNNAC 2 cut(s) 98, 145
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 218, 224, 319, 400
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 2 cut(s) 275, 400
Ksp22I TGATCA 2 cut(s) 22, 268
Kzo9I GATC 4 cut(s) 22, 91, 268, 350
LpnPI CCDG 6 cut(s) 141, 191, 241, 311, 345, 378
LweI GCATC 2 cut(s) 96, 211
MaeII ACGT 1 cut(s) 184
MalI GATC 4 cut(s) 24, 93, 270, 352
MboI GATC 4 cut(s) 22, 91, 268, 350
MboII GAAGA 3 cut(s) 208, 241, 375
MflI RGATCY 1 cut(s) 350
MluCI AATT 3 cut(s) 51, 149, 311
MnlI CCTC 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 402
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 400
NdeII GATC 4 cut(s) 22, 91, 268, 350
NlaIII CATG 2 cut(s) 275, 400
NlaIV GGNNCC 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 402
NspI RCATGY 1 cut(s) 400
OliI CACNNNNGTG 1 cut(s) 118
PaeI GCATGC 1 cut(s) 400
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 293
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 2 cut(s) 62, 74
RsaNI GTAC 2 cut(s) 61, 73
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 4 cut(s) 22, 91, 268, 350
ScaI AGTACT 1 cut(s) 62
SetI ASST 4 cut(s) 33, 172, 187, 327
SfaNI GCATC 2 cut(s) 96, 211
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 118
SphI GCATGC 1 cut(s) 400
Sse9I AATT 3 cut(s) 51, 149, 311
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 104
TasI AATT 3 cut(s) 51, 149, 311
TatI WGTACW 2 cut(s) 60, 72
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
VspI ATTAAT 1 cut(s) 314
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 400
ZrmI AGTACT 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.