Rorug06G0258200

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003833
Physical Location & Seq
Forward (+)
40552283 .. 40554486
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0258200.1

Sequence Viewer

Length: 1392 bp
ATGGAGAAGGAAGATAAAGCCTACGAAGCTCATTGTTTAGTCGTATCGTTTCCAACTCAAGGCCACATTAATCCCATGCTCCAATTCTCCAAGCGCTTAGAGCGAAAAGGCCTCAAAGTTACACTGGTCACAACCCAATCCTTTCACAAACTCTTGTCCTCGCCGTCCACATCCATCACATTAGAGACCATCTCCGATGGCCACGACGAAGGTGGGTCCGCAGAAGCGGAGAGCATGGAAGCCTATCTGGATAGATTTCGTGAAGTCGGATCAAGGACCCTGACTAAGCTCATCGAGAAGCTCTCAGACTCGGGGCATAAAGTTGATTGTATAGTTTATGATGCGTTTATTCCTTGGCCGCTGGAAGTGGCCAAAAGGTTTGGGATTGTTGGGGTAGCTTTCTTCACTCAGTCTTGTGCTGTTGACAACATATACTACAATGTCCAACAGGGTTTGCTCAAAGTTCCATGTACTAATGAGTCTGAGATTTTGCTTCCGGGAGTGCGAGTACCTCTTCGAGCTTCGGATATGCCTTCTTTTGTTTCCGTTCCCAGTCAGTACCCGGCTTTTCTTAGAATGGTTGTGGATCAGTTCTCCAATGTTGACAAAGCTGATTGGATCCTCTGCAACACATTTTATGAGCTGGAAGTAGAGGAGGCGGATTGGATGGCAAAGTTCTGGCCATTGAGGACGATCGGTCCAACTATACCATCCATGTATTTGGATAAACGACATGAGGATGACAAAGAATATGGCTTCAGCCTCTTTAAGCCAAATAGTGATGCCTGCATGAAATGGCTAAAGGAACGACAAAAAGGATCAGTAGCTTATGTGTCATTTGGCAGCTTAGCAGAGCTTGGAGCCGAGCAAATGGAGGAACTGGGCTGGGGTTTAAAGAATAGCAACATCTACTTCTTGTGGGTGGTCAGAGAAAAAGAAGCAAACAAGCTTCCAAGAGGGTTTGCAGAGGCGATATCGGAGAAGGGTTTGGTGGTCTCATGGTGTCCCCAATTGGAGGTTTTGGCAACCGAAGCTGTTGGTTGTTTCGTTACGCATTGCGGTTGGAACTCGACTTTGGAGGCATTGAGCTTAGGGGTTCCAATGGTTGCAGTGCCACAATGGACTGATCAGAGCACTAATGCAAAGTATATTATGGATGTGTGGAAAATGGGGCTTAGAGCTCAAGCTGATGAGAAAGGGATAGTGAGACGGGAAGAAATAGAATATTGTGTGAGAGAGATATTGGAGAGAGAGAGAGGGAAAGAGATACAAAAGAATGCTTGGAAGTGGAAAGAATTGGCTAGAAAGGCTGTGGATAAAGGTGGAAGTTCTGATAGAAACATTGATGAGTTCATTGCAAAACTGGTTCAGCATGCACATGTAGCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

463

Amino Acids

52.45

Weight (kDa)

5.58

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 25 - 391 4.8e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 219, 227, 359, 659, 1059
AclWI GGATC 5 cut(s) 277, 594, 613, 626, 826
AcoI YGGCCR 4 cut(s) 199, 356, 369, 680
AcuI CTGAAG 1 cut(s) 742
AfaI GTAC 3 cut(s) 472, 510, 560
AfeI AGCGCT 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 59, 1015
AflIII ACRYGT 1 cut(s) 1378
AhdI GACNNNNNGTC 1 cut(s) 696
AjuI GAANNNNNNNTTGG 2 cut(s) 1058, 1090
Alw21I GWGCWC 2 cut(s) 1136, 1183
Alw26I GTCTC 3 cut(s) 179, 1000, 1201
AlwI GGATC 5 cut(s) 277, 594, 613, 626, 826
Ama87I CYCGRG 1 cut(s) 310
Aor51HI AGCGCT 1 cut(s) 95
AoxI GGCC 6 cut(s) 61, 109, 199, 356, 369, 680
ApeKI GCWGC 1 cut(s) 843
AseI ATTAAT 1 cut(s) 69
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 3 cut(s) 216, 276, 698
AsuC2I CCSGG 2 cut(s) 498, 563
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 3 cut(s) 216, 276, 698
BalI TGGCCA 3 cut(s) 201, 371, 682
BamHI GGATCC 1 cut(s) 618
BanII GRGCYC 1 cut(s) 1183
Bbv12I GWGCWC 2 cut(s) 1136, 1183
BbvI GCAGC 1 cut(s) 855
BccI CCATC 5 cut(s) 182, 191, 197, 661, 718
BceAI ACGGC 1 cut(s) 148
BclI TGATCA 1 cut(s) 1126
BcnI CCSGG 2 cut(s) 498, 563
BcoDI GTCTC 3 cut(s) 179, 1000, 1201
BfaI CTAG 2 cut(s) 1302, 1390
BfoI RGCGCY 1 cut(s) 97
BisI GCNGC 2 cut(s) 359, 844
BlpI GCTNAGC 1 cut(s) 847
BlsI GCNGC 2 cut(s) 360, 845
Bme1390I CCNGG 2 cut(s) 498, 563
Bme18I GGWCC 3 cut(s) 216, 276, 698
BmeRI GACNNNNNGTC 1 cut(s) 696
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 216, 276, 698
BmiI GGNNCC 5 cut(s) 217, 278, 620, 862, 1098
BmrFI CCNGG 2 cut(s) 498, 563
BmrI ACTGGG 2 cut(s) 546, 890
BmsI GCATC 2 cut(s) 331, 772
BmuI ACTGGG 2 cut(s) 546, 890
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 287, 319
Bpu10I CCTNAGC 1 cut(s) 1090
Bpu1102I GCTNAGC 1 cut(s) 847
BpuEI CTTGAG 2 cut(s) 42, 1167
BpuMI CCSGG 2 cut(s) 498, 563
BsaI GGTCTC 2 cut(s) 179, 1000
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 1015
Bse1I ACTGG 4 cut(s) 129, 552, 885, 1368
Bse3DI GCAATG 2 cut(s) 1054, 1353
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 5 cut(s) 170, 672, 710, 745, 1162
BseLI CCNNNNNNNGG 2 cut(s) 59, 1015
BseMI GCAATG 2 cut(s) 1054, 1353
BseMII CTCAG 3 cut(s) 318, 422, 474
BseNI ACTGG 4 cut(s) 129, 552, 885, 1368
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 1 cut(s) 855
BseYI CCCAGC 1 cut(s) 885
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 6 cut(s) 63, 111, 201, 358, 371, 682
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 2 cut(s) 1136, 1183
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 2 cut(s) 497, 563
BslFI GGGAC 1 cut(s) 990
BslI CCNNNNNNNGG 2 cut(s) 59, 1015
BsmAI GTCTC 3 cut(s) 179, 1000, 1201
BsmBI CGTCTC 1 cut(s) 1201
BsmFI GGGAC 1 cut(s) 990
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 6 cut(s) 63, 111, 201, 358, 371, 682
Bso31I GGTCTC 2 cut(s) 179, 1000
BsoBI CYCGRG 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 1136, 1183
Bsp143I GATC 6 cut(s) 269, 586, 618, 693, 818, 1126
Bsp1720I GCTNAGC 1 cut(s) 847
BspACI CCGC 5 cut(s) 219, 227, 359, 659, 1059
BspANI GGCC 6 cut(s) 63, 111, 201, 358, 371, 682
BspCNI CTCAG 3 cut(s) 317, 421, 475
BspLI GGNNCC 5 cut(s) 217, 278, 620, 862, 1098
BspPI GGATC 5 cut(s) 277, 594, 613, 626, 826
BspTNI GGTCTC 2 cut(s) 179, 1000
BsrDI GCAATG 2 cut(s) 1054, 1353
BsrI ACTGG 4 cut(s) 129, 552, 885, 1368
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 6 cut(s) 269, 586, 618, 693, 818, 1126
BssT1I CCWWGG 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 519
BstC8I GCNNGC 3 cut(s) 787, 1374, 1387
BstDEI CTNAG 9 cut(s) 97, 285, 304, 408, 483, 572, 847, 1090, 1175
BstF5I GGATG 5 cut(s) 170, 672, 710, 745, 1162
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 6 cut(s) 272, 589, 621, 696, 821, 1129
BstMAI GTCTC 3 cut(s) 179, 1000, 1201
BstMBI GATC 6 cut(s) 269, 586, 618, 693, 818, 1126
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 5 cut(s) 26, 100, 1031, 1307, 1382
BstNSI RCATGY 2 cut(s) 1376, 1382
BstSCI CCNGG 2 cut(s) 496, 561
BstV1I GCAGC 1 cut(s) 855
BstX2I RGATCY 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 1 cut(s) 618
BsuRI GGCC 6 cut(s) 63, 111, 201, 358, 371, 682
BtsCI GGATG 5 cut(s) 170, 672, 710, 745, 1162
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 2 cut(s) 122, 1116
Cac8I GCNNGC 3 cut(s) 787, 1374, 1387
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 3 cut(s) 216, 276, 698
Csp6I GTAC 3 cut(s) 471, 509, 559
CviAII CATG 9 cut(s) 76, 235, 468, 715, 734, 790, 999, 1373, 1379
CviQI GTAC 3 cut(s) 471, 509, 559
DdeI CTNAG 9 cut(s) 97, 285, 304, 408, 483, 572, 847, 1090, 1175
DpnI GATC 6 cut(s) 271, 588, 620, 695, 820, 1128
DpnII GATC 6 cut(s) 269, 586, 618, 693, 818, 1126
DraI TTTAAA 1 cut(s) 894
DriI GACNNNNNGTC 1 cut(s) 696
EaeI YGGCCR 4 cut(s) 199, 356, 369, 680
Eam1104I CTCTTC 1 cut(s) 519
Eam1105I GACNNNNNGTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 519
EciI GGCGGA 1 cut(s) 674
Ecl136II GAGCTC 1 cut(s) 1181
Eco130I CCWWGG 1 cut(s) 353
Eco147I AGGCCT 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 1183
Eco31I GGTCTC 2 cut(s) 179, 1000
Eco32I GATATC 1 cut(s) 975
Eco47I GGWCC 3 cut(s) 216, 276, 698
Eco47III AGCGCT 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 1181
Eco57I CTGAAG 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 1181
EcoO109I RGGNCCY 1 cut(s) 276
EcoRV GATATC 1 cut(s) 975
EcoT14I CCWWGG 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 1183
ErhI CCWWGG 1 cut(s) 353
Esp3I CGTCTC 1 cut(s) 1201
FaeI CATG 9 cut(s) 79, 238, 471, 718, 737, 793, 1002, 1376, 1382
FaqI GGGAC 1 cut(s) 990
FatI CATG 9 cut(s) 75, 234, 467, 714, 733, 789, 998, 1372, 1378
FbaI TGATCA 1 cut(s) 1126
Fnu4HI GCNGC 2 cut(s) 359, 844
FokI GGATG 5 cut(s) 157, 679, 697, 752, 1169
FriOI GRGCYC 1 cut(s) 1183
Fsp4HI GCNGC 2 cut(s) 359, 844
FspBI CTAG 2 cut(s) 1302, 1390
GlaI GCGC 1 cut(s) 95
GluI GCNGC 2 cut(s) 359, 844
GsaI CCCAGC 1 cut(s) 889
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 6 cut(s) 63, 111, 201, 358, 371, 682
HapII CCGG 2 cut(s) 497, 563
HhaI GCGC 1 cut(s) 96
Hin1II CATG 9 cut(s) 79, 238, 471, 718, 737, 793, 1002, 1376, 1382
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 2 cut(s) 424, 604
HindII GTYRAC 2 cut(s) 424, 604
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 2 cut(s) 308, 479
HpaII CCGG 2 cut(s) 497, 563
Hpy166II GTNNAC 3 cut(s) 168, 424, 604
Hpy188I TCNGA 9 cut(s) 196, 269, 307, 484, 526, 929, 979, 1131, 1333
Hpy188III TCNNGA 3 cut(s) 248, 260, 295
Hpy8I GTNNAC 3 cut(s) 168, 424, 604
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 203, 543, 976
HpyCH4V TGCA 7 cut(s) 627, 789, 965, 1109, 1142, 1358, 1376
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 100, 1031, 1307, 1382
HpyF3I CTNAG 9 cut(s) 97, 285, 304, 408, 483, 572, 847, 1090, 1175
Hsp92II CATG 9 cut(s) 79, 238, 471, 718, 737, 793, 1002, 1376, 1382
HspAI GCGC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 6 cut(s) 269, 586, 618, 693, 818, 1126
LmnI GCTCC 2 cut(s) 84, 860
Lsp1109I GCAGC 1 cut(s) 855
LweI GCATC 2 cut(s) 331, 772
MaeI CTAG 2 cut(s) 1302, 1390
MaeIII GTNAC 3 cut(s) 118, 127, 1048
MalI GATC 6 cut(s) 271, 588, 620, 695, 820, 1128
MboI GATC 6 cut(s) 269, 586, 618, 693, 818, 1126
MboII GAAGA 4 cut(s) 23, 394, 506, 1226
MfeI CAATTG 1 cut(s) 1010
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 2 cut(s) 1136, 1183
MlsI TGGCCA 3 cut(s) 201, 371, 682
MluCI AATT 3 cut(s) 83, 1010, 1295
MluNI TGGCCA 3 cut(s) 201, 371, 682
MlyI GAGTC 2 cut(s) 302, 488
MmeI TCCRAC 5 cut(s) 77, 247, 469, 725, 1043
Mox20I TGGCCA 3 cut(s) 201, 371, 682
MscI TGGCCA 3 cut(s) 201, 371, 682
MseI TTAA 3 cut(s) 69, 768, 893
MslI CAYNNNNRTG 2 cut(s) 738, 1377
Msp20I TGGCCA 3 cut(s) 201, 371, 682
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 2 cut(s) 497, 563
MspR9I CCNGG 2 cut(s) 498, 563
MunI CAATTG 1 cut(s) 1010
Mva1269I GAATGC 1 cut(s) 1282
MwoI GCNNNNNNNGC 5 cut(s) 26, 100, 1031, 1307, 1382
NciI CCSGG 2 cut(s) 498, 563
NdeII GATC 6 cut(s) 269, 586, 618, 693, 818, 1126
NlaIII CATG 9 cut(s) 79, 238, 471, 718, 737, 793, 1002, 1376, 1382
NlaIV GGNNCC 5 cut(s) 217, 278, 620, 862, 1098
NmeAIII GCCGAG 1 cut(s) 889
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 2 cut(s) 1376, 1382
PaeI GCATGC 1 cut(s) 1376
PceI AGGCCT 1 cut(s) 111
PciI ACATGT 1 cut(s) 1378
PctI GAATGC 1 cut(s) 1282
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 2 cut(s) 360, 845
Ple19I CGATCG 1 cut(s) 696
PleI GAGTC 2 cut(s) 302, 487
PpsI GAGTC 2 cut(s) 302, 487
PpuMI RGGWCCY 1 cut(s) 276
PscI ACATGT 1 cut(s) 1378
PshBI ATTAAT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 1183
Psp5II RGGWCCY 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 885
PspN4I GGNNCC 5 cut(s) 217, 278, 620, 862, 1098
PspPI GGNCC 3 cut(s) 216, 276, 698
PspPPI RGGWCCY 1 cut(s) 276
PsuI RGATCY 1 cut(s) 618
PvuI CGATCG 1 cut(s) 696
RsaI GTAC 3 cut(s) 472, 510, 560
RsaNI GTAC 3 cut(s) 471, 509, 559
RseI CAYNNNNRTG 2 cut(s) 738, 1377
SacI GAGCTC 1 cut(s) 1183
SaqAI TTAA 3 cut(s) 69, 768, 893
SatI GCNGC 2 cut(s) 359, 844
Sau3AI GATC 6 cut(s) 269, 586, 618, 693, 818, 1126
Sau96I GGNCC 3 cut(s) 216, 276, 698
SchI GAGTC 2 cut(s) 302, 488
ScrFI CCNGG 2 cut(s) 498, 563
SduI GDGCHC 2 cut(s) 1136, 1183
SfaNI GCATC 2 cut(s) 331, 772
SinI GGWCC 3 cut(s) 216, 276, 698
SmiMI CAYNNNNRTG 2 cut(s) 738, 1377
SmlI CTYRAG 2 cut(s) 57, 1182
SmoI CTYRAG 2 cut(s) 57, 1182
SphI GCATGC 1 cut(s) 1376
Sse9I AATT 3 cut(s) 83, 1010, 1295
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 5 cut(s) 219, 227, 359, 659, 1059
SspI AATATT 1 cut(s) 1226
SspMI CTAG 2 cut(s) 1302, 1390
SstI GAGCTC 1 cut(s) 1183
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 496, 561
StyI CCWWGG 1 cut(s) 353
TaqI TCGA 3 cut(s) 294, 517, 1070
TaqII GACCGA 1 cut(s) 686
TasI AATT 3 cut(s) 83, 1010, 1295
TatI WGTACW 1 cut(s) 470
TauI GCSGC 1 cut(s) 361
Tru1I TTAA 3 cut(s) 69, 768, 893
Tru9I TTAA 3 cut(s) 69, 768, 893
TscAI CASTG 2 cut(s) 129, 1116
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 843
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 806, 1342
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 2 cut(s) 129, 1116
VpaK11BI GGWCC 3 cut(s) 216, 276, 698
VspI ATTAAT 1 cut(s) 69
XceI RCATGY 2 cut(s) 1376, 1382
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XspI CTAG 2 cut(s) 1302, 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.