Rroxscaffold_1G00056950

GPI-anchored adhesin-like protein PGA55

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011156
Physical Location & Seq
Reverse (-)
78933690 .. 78939651
5962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056950.1

Sequence Viewer

Length: 3258 bp
ATGGCATCTTCCCAAGTGGAAATGGCCTCTGCGCCGTTCGGTTGCGTTTTGAGGGATCACAACCGCCGGGACCGGTGCAGAGAGAGCAATGCCAGAGCCACCATAGGTGTTCTGCAGAAGAATCTCAAGAGTTTGGTGAGGGATCATCTCTGCATTGCAGTGTCTTCAAACTCTGGCTCCAATGACAGCAACTCCGAGAACCATCGAAACAAGGAGCCAAACAAGGATGAGAACAGCAACAGAAATGGTGAAAGAGAAGATGGTTCGGGTTCGGTTATGAGCCCGAGGCATGCTAGGGTTCTTGATCGATGGGCTTTCGCAAGACAAATAGTGACGAAACCAATTGAGAGGCAGAGGAAAGAAGAGGCAGAGGTGGTTTCTGTGCCGAACTCGGCGCCTTCTTCCACAAGGACGTCGACTTCTGCCAAGGAAGAGACTTTGGCAAGAACAGATAGCTTGGCTGATCTTACCAAAAAAGGCGTGGGGGCTTCGTCTCTGGTTCAAATTTGGGAGAAGAGGCTCCACAAATCAGAATCCCTCAAAACCAATTCCAATGGAAATGTAATATCCGAGACAAGTAGGTCAGATTCTGGAGTTAGCTGCCCTGAGAATGAGAATGACAATGAGAATGTAATAGTTCCCAATGCTTCACCGTCCAGAGTTTCTGAAGCAGAAAAGGCAGAGTCCCCTGGTGAGAAAGCAGGGGATACCATTTTCTCTATTGAAAAAACAGGGGACTCTGTTTTGGATATGGAAAAAGCAAGGGAGTCTACTGATGAAAGCTATGATGCTGGCGCTGTTACCGACATTGAAGATTCTGATAGGATTGCTGTGAATAGCCGGAATTTAGATTCTAAAGAAAAAGAGAAGGTTCGAGTTGTGGATATTATTAGAAGACTGACTGCACAGGGTCCATCGTCCTCTTTGAGTGAGGAAAATGCTAATGATCATGATCAGCAGTTTAGTAGCGCTCACGGATCGCCATGTAGGGATATCCCCCGTGAGCTGTTACGTGATCGGTGTTCCGGGGTTGATCAAGCAGAGCACAGAGGCCTCTCTCATGTTATAAGCTCACCACGCATCAGAGGGAGGCAGGCATTTGCCGACTTGCTTATGCAGATGGAGCGTGACAGGCATAGGGAACTTGACACACTGGTAAACCGCAAAACAGTTTCTAAGTTCCCACAGCGAGGCCGAACTCGAATTCAGTCATTACTTAGGCTTCGATTGCTACAACGTGGTGTGGCATTTGCGGGTGTAGATGCGCCACCACTTCCACCAAAAGCATCTCGTGTGAACAAACCGGCGCAAGGATCTAGCATCATGCATCTCAGGGAGAAATTTCGTACTAGTGCTGAGCAGGGTTCAGTAGTGCAGGGTGATGCACCTAATCCAAATAGCCCTCATAAGGAGATCATAAAGAACCAGTGTGTCAATGTAGACAAATCCTCCACCTCCAATAAGCCCAGTGAAAGCACTCCTAATCGAGAAGTTAATGTTATGGAACAGCAGAAACTGCGTGCTAGTGAAGATGTTTGTGAAGAAGCGACCCAGAGTTTACACAAATCCTCCACCTCCACCAATAAGCCCAGTGAAAGCACTTCTAATCGAGAAGTTAATGTTATGGAGCAGCAGAAAACATTCCCAGGACTGCGTGCTAGTGAAGATGTTTGTGAAGAAGCGACCCCCAGTTTACACAAATCCTCCACCTCTAATAAGCCTAGTGAAAGCACTCCTAATCGAGAAGTTAATGTTATGGAGCAGCAGAAAGCGTCCCCAGAACTGCGTGCTAGTGAAGATGTTTGTGAAGAAGCGACCCAGAGTTTGCAGAAATCCTCCACCTCCAATAAGCCTAGTGAAAGCACTCCTAATCGAGAAGTTAATGTTATGGAGCAGCAGAAAACATCCCCAGTACTGCGTGCTAGTGAAGAAGCTATCCCCAGTTTACACAAATCCTCCACCTCCAATAAGCCTAGTGAAAGCTTTCCTAATCGAGGAGTTAATGATATGGAGCAGCAGAAAACATCCCCAGTACTGCGTGCTAGTGAGGATGTTTGTGAAGAAGTGACCCCCAGTTTAGAAGTTTGCTTCCAAGAAACTAGTTCAGTTTCTCAAAGCACCTTGCCAAATGTTAGTGAAGATCTTTGTGAAGTAGCCAGCCCAAGTCCGAATGTCACCTGGCAAGACACAAGTTCAGTAGCTAGAAACCTTGGTTCGCAAGAAACTGCTGATCCAACCACACCCATAAATGGTTCAAATGAGAATGAGATATGGAAAGGAAAAGGTTCAGTGGATAGAAACCTTGATTCACAAGAAACTGTAGATTCAACAACATCCTTGAATGGTCGCGATGGGGATGATGAAATATGGAAACCCACAAGTTCAGAGGCTAGATACCTTGATTCACAACAAAGTGCAGATACAAGGAAACCCTTGAGTGGTGGGGATGGGACTGGGAATGAAATATGGAAAGGAACAAGTTCAGAGGCTAGAAACCTTGACACACATGAAGCTGCAGATACAACCTCATCCTTGAACAGTTGGAATGAAAATGCGATATGGCATGGAACAAGTTTAGAGGCTAGAAACTTTGAGTCACAAGTAGATACAACAACATTCTTGGTGGACTGGGATGAGAATGATGATGATTACCAGTATTACGGAGAAACAAATTATGACTGGATCAGTGAGATTTCTCGCCCACGGAGCTATTGGGAAGACATTAGGAAATCATGGTACCAAGAGATGCTTAACTCCAATTCAGAAAAAGGCGAGATACACCAACTCCTTGAAAGAAGAACAGTATCAAACTTTCTTTGTAGTGATTTCCGAGATAGGATAGATAGATTGATGGTATCTCGCATAGAAAGACAAACATGTCACAGTGTCAATCAAGAAGAAGAAGATGACGAGAGCAGCTATGATAGAATGAATCAAATGGTGTCTTTCTTACAACAACGCAGCAGCGCATCAGGCACTGAAGAAGCAGAAGAAGTGCAAGAACATGTACAGGTACAAGAACAAAACCAAGTCCAAGAACAAGTGCTAGAACACGTGCAAGTCCAAGAACAGGTGCGAGAACATCAAGACCATGAAGACGAGGAGATGACAGAAGAAGAGGAGGAGCAAGAAGAAGCAGAAGAAGTGAAAGAACATGTACAGGTACTAGAACAAAACCAAGTCCAAGAACAAGTGCTAGAACAGGTGCAAGTCCAAGAACAGGTGCAAGAACATCAAGACCACGAGGACGGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

1085

Amino Acids

121.45

Weight (kDa)

4.87

Isoelectric Point (pI)

56.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34920
fragaria_vesca FvH4_3g13290 FvH4_3g13290
malus_domestica MD05G1243100.v1.1 MD10G1225200.v1.1
prunus_persica Prupe.4G120300_v2.0.a1 Prupe.4G120300_v2.0.a1
pyrus_communis pycom10g18910
rosa_chinensis RchiOBHm_Chr5g0021761
rosa_laevigata RLG00000032625
rosa_multiflora Rmu_ssc0000233.1_g000006
rosa_roxburghii Rroxscaffold_1G00056950
rosa_rugosa Rorug05G0069000 Rorug05G0069100 Rorug05G0069200
rosa_samantha Rh5AG157700 Rh5BG157300 Rh5CG171500 Rh5DG157600
rosa_wichuraiana Rw5G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1067
AasI GACNNNNNNGTC 2 cut(s) 580, 2877
AatII GACGTC 1 cut(s) 416
Acc65I GGTACC 1 cut(s) 2736
AccB1I GGYRCC 2 cut(s) 394, 2736
AccI GTMKAC 3 cut(s) 416, 770, 1440
AccII CGCG 1 cut(s) 2349
AciI CCGC 3 cut(s) 64, 1162, 1253
AclWI GGATC 6 cut(s) 63, 150, 985, 1321, 2225, 2690
AcsI RAATTY 4 cut(s) 504, 844, 1203, 1340
AcuI CTGAAG 2 cut(s) 687, 3000
AcvI CACGTG 1 cut(s) 3055
AcyI GRCGYC 2 cut(s) 395, 413
AfaI GTAC 8 cut(s) 1348, 1914, 2034, 2738, 3009, 3015, 3159, 3165
AfeI AGCGCT 1 cut(s) 970
AfiI CCNNNNNNNGG 8 cut(s) 1190, 1310, 1408, 1994, 2249, 2438, 3070, 3220
AflIII ACRYGT 4 cut(s) 2876, 3004, 3052, 3154
AgeI ACCGGT 1 cut(s) 72
AgsI TTSAA 9 cut(s) 168, 503, 725, 812, 2256, 2328, 2341, 2536, 2792
AhlI ACTAGT 2 cut(s) 1349, 2099
AjnI CCWGG 3 cut(s) 688, 1645, 2177
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 3 cut(s) 428, 498, 566
AlwI GGATC 6 cut(s) 63, 150, 985, 1321, 2225, 2690
AlwNI CAGNNNCTG 3 cut(s) 590, 1516, 2978
Ama87I CYCGRG 1 cut(s) 283
Aor51HI AGCGCT 1 cut(s) 970
AoxI GGCC 3 cut(s) 24, 1051, 1192
ApeKI GCWGC 9 cut(s) 600, 1630, 1762, 1894, 2014, 2513, 2916, 2961, 2964
ApoI RAATTY 4 cut(s) 504, 844, 1203, 1340
ArsI GACNNNNNNTTYG 2 cut(s) 1807, 1839
AsiGI ACCGGT 1 cut(s) 72
Asp700I GAANNNNTTC 4 cut(s) 1640, 1983, 2284, 2479
Asp718I GGTACC 1 cut(s) 2736
AspLEI GCGC 7 cut(s) 34, 397, 797, 971, 1267, 1309, 2969
AspS9I GGNCC 2 cut(s) 70, 911
AsuC2I CCSGG 2 cut(s) 68, 1027
AsuHPI GGTGA 7 cut(s) 148, 260, 642, 704, 1065, 1391, 2167
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 2 cut(s) 70, 911
BanI GGYRCC 2 cut(s) 394, 2736
BanII GRGCYC 1 cut(s) 284
BauI CACGAG 2 cut(s) 1290, 3242
BbrPI CACGTG 1 cut(s) 3055
BbsI GAAGAC 4 cut(s) 156, 901, 2724, 3102
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 9 cut(s) 587, 1642, 1774, 1906, 2026, 2500, 2928, 2973, 2976
BccI CCATC 8 cut(s) 210, 254, 303, 922, 1114, 2345, 2441, 2845
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 3 cut(s) 690, 1647, 2179
BciVI GTATCC 1 cut(s) 700
BclI TGATCA 3 cut(s) 946, 952, 1033
BcnI CCSGG 2 cut(s) 68, 1027
BcoDI GTCTC 3 cut(s) 428, 498, 566
BcuI ACTAGT 2 cut(s) 1349, 2099
BfmI CTRYAG 3 cut(s) 113, 2319, 2514
BfoI RGCGCY 3 cut(s) 398, 798, 972
BfuI GTATCC 1 cut(s) 700
BglII AGATCT 1 cut(s) 2140
BisI GCNGC 9 cut(s) 601, 1631, 1763, 1895, 2015, 2514, 2917, 2962, 2965
BlpI GCTNAGC 1 cut(s) 1356
BlsI GCNGC 9 cut(s) 602, 1632, 1764, 1896, 2016, 2515, 2918, 2963, 2966
BmcAI AGTACT 2 cut(s) 1914, 2034
Bme1390I CCNGG 5 cut(s) 68, 690, 1027, 1647, 2179
Bme18I GGWCC 2 cut(s) 70, 911
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 70, 911
BmiI GGNNCC 7 cut(s) 71, 178, 216, 396, 521, 912, 2738
BmrFI CCNGG 5 cut(s) 68, 690, 1027, 1647, 2179
BmrI ACTGGG 9 cut(s) 1461, 1584, 1683, 1904, 1935, 2024, 2067, 2463, 2638
BmuI ACTGGG 9 cut(s) 1461, 1584, 1683, 1904, 1935, 2024, 2067, 2463, 2638
BpiI GAAGAC 4 cut(s) 156, 901, 2724, 3102
BpmI CTGGAG 1 cut(s) 612
Bpu1102I GCTNAGC 1 cut(s) 1356
BpuEI CTTGAG 2 cut(s) 110, 2455
BpuMI CCSGG 2 cut(s) 68, 1027
Bsa29I ATCGAT 1 cut(s) 307
BsaAI YACGTR 2 cut(s) 1013, 3055
BsaBI GATNNNNATC 1 cut(s) 951
BsaHI GRCGYC 2 cut(s) 395, 413
BsaJI CCNNGG 7 cut(s) 284, 426, 688, 1026, 1645, 2209, 2702
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 8 cut(s) 1190, 1310, 1408, 1994, 2249, 2438, 3070, 3220
Bse118I RCCGGY 2 cut(s) 72, 1303
Bse3DI GCAATG 2 cut(s) 94, 153
Bse8I GATNNNNATC 1 cut(s) 951
BseBI CCWGG 3 cut(s) 690, 1647, 2179
BseCI ATCGAT 1 cut(s) 307
BseDI CCNNGG 7 cut(s) 284, 426, 688, 1026, 1645, 2209, 2702
BseGI GGATG 9 cut(s) 232, 1904, 2024, 2056, 2333, 2362, 2452, 2528, 2638
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 8 cut(s) 1190, 1310, 1408, 1994, 2249, 2438, 3070, 3220
BseMI GCAATG 2 cut(s) 94, 153
BseMII CTCAG 3 cut(s) 597, 1345, 1347
BseRI GAGGAG 4 cut(s) 2010, 3116, 3134, 3137
BseXI GCAGC 9 cut(s) 587, 1642, 1774, 1906, 2026, 2500, 2928, 2973, 2976
BsgI GTGCAG 4 cut(s) 97, 888, 1394, 2436
Bsh1236I CGCG 1 cut(s) 2349
BshFI GGCC 3 cut(s) 26, 1053, 1194
BshNI GGYRCC 2 cut(s) 394, 2736
BshTI ACCGGT 1 cut(s) 72
BshVI ATCGAT 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 5 cut(s) 67, 73, 841, 1026, 1304
BslFI GGGAC 5 cut(s) 83, 670, 749, 1759, 2464
BslI CCNNNNNNNGG 8 cut(s) 1190, 1310, 1408, 1994, 2249, 2438, 3070, 3220
BsmAI GTCTC 3 cut(s) 428, 498, 566
BsmBI CGTCTC 1 cut(s) 498
BsmFI GGGAC 5 cut(s) 83, 670, 749, 1759, 2464
BsnI GGCC 3 cut(s) 26, 1053, 1194
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 284, 1047
Bsp1407I TGTACA 2 cut(s) 3007, 3157
Bsp1720I GCTNAGC 1 cut(s) 1356
Bsp68I TCGCGA 1 cut(s) 2349
BspACI CCGC 3 cut(s) 64, 1162, 1253
BspANI GGCC 3 cut(s) 26, 1053, 1194
BspCNI CTCAG 3 cut(s) 598, 1344, 1348
BspDI ATCGAT 1 cut(s) 307
BspFNI CGCG 1 cut(s) 2349
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 7 cut(s) 71, 178, 216, 396, 521, 912, 2738
BspMAI CTGCAG 2 cut(s) 117, 2518
BspPI GGATC 6 cut(s) 63, 150, 985, 1321, 2225, 2690
BspT107I GGYRCC 2 cut(s) 394, 2736
BsrDI GCAATG 2 cut(s) 94, 153
BsrFI RCCGGY 2 cut(s) 72, 1303
BsrGI TGTACA 2 cut(s) 3007, 3157
BssAI RCCGGY 2 cut(s) 72, 1303
BssECI CCNNGG 7 cut(s) 284, 426, 688, 1026, 1645, 2209, 2702
BssNI GRCGYC 2 cut(s) 395, 413
BssSI CACGAG 2 cut(s) 1290, 3242
BssT1I CCWWGG 2 cut(s) 426, 2209
Bst2BI CACGAG 2 cut(s) 1290, 3242
Bst2UI CCWGG 3 cut(s) 690, 1647, 2179
Bst4CI ACNGT 6 cut(s) 654, 1171, 2320, 2540, 2803, 2885
Bst6I CTCTTC 4 cut(s) 357, 426, 509, 3111
BstACI GRCGYC 2 cut(s) 395, 413
BstAPI GCANNNNNTGC 1 cut(s) 1516
BstAUI TGTACA 2 cut(s) 3007, 3157
BstBAI YACGTR 2 cut(s) 1013, 3055
BstC8I GCNNGC 9 cut(s) 291, 793, 1095, 1521, 1656, 1788, 1920, 2040, 2158
BstDEI CTNAG 5 cut(s) 606, 1176, 1217, 1331, 1356
BstDSI CCRYGG 1 cut(s) 2702
BstENI CCTNNNNNAGG 1 cut(s) 1992
BstF5I GGATG 9 cut(s) 232, 1904, 2024, 2056, 2333, 2362, 2452, 2528, 2638
BstFNI CGCG 1 cut(s) 2349
BstH2I RGCGCY 3 cut(s) 398, 798, 972
BstHHI GCGC 7 cut(s) 34, 397, 797, 971, 1267, 1309, 2969
BstMAI GTCTC 3 cut(s) 428, 498, 566
BstMWI GCNNNNNNNGC 9 cut(s) 84, 677, 1077, 1123, 1132, 1228, 1516, 2706, 2973
BstNI CCWGG 3 cut(s) 690, 1647, 2179
BstNSI RCATGY 4 cut(s) 293, 2880, 3008, 3158
BstSCI CCNGG 5 cut(s) 66, 688, 1025, 1645, 2177
BstSFI CTRYAG 3 cut(s) 113, 2319, 2514
BstUI CGCG 1 cut(s) 2349
BstV1I GCAGC 9 cut(s) 587, 1642, 1774, 1906, 2026, 2500, 2928, 2973, 2976
BstV2I GAAGAC 4 cut(s) 156, 901, 2724, 3102
BstX2I RGATCY 2 cut(s) 1313, 2140
BstYI RGATCY 2 cut(s) 1313, 2140
Bsu15I ATCGAT 1 cut(s) 307
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 3 cut(s) 26, 1053, 1194
BsuTUI ATCGAT 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 2702
BtgZI GCGATG 1 cut(s) 2364
BtsCI GGATG 9 cut(s) 232, 1904, 2024, 2056, 2333, 2362, 2452, 2528, 2638
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 9 cut(s) 165, 1151, 1433, 1474, 1597, 2295, 2692, 2890, 2976
BtuMI TCGCGA 1 cut(s) 2349
Cac8I GCNNGC 9 cut(s) 291, 793, 1095, 1521, 1656, 1788, 1920, 2040, 2158
CaiI CAGNNNCTG 3 cut(s) 590, 1516, 2978
CciI TCATGA 1 cut(s) 949
CfoI GCGC 7 cut(s) 34, 397, 797, 971, 1267, 1309, 2969
Cfr10I RCCGGY 2 cut(s) 72, 1303
Cfr13I GGNCC 2 cut(s) 70, 911
ClaI ATCGAT 1 cut(s) 307
CseI GACGC 1 cut(s) 1761
Csp6I GTAC 8 cut(s) 1347, 1913, 2033, 2737, 3008, 3014, 3158, 3164
CspAI ACCGGT 1 cut(s) 72
CviQI GTAC 8 cut(s) 1347, 1913, 2033, 2737, 3008, 3014, 3158, 3164
DdeI CTNAG 5 cut(s) 606, 1176, 1217, 1331, 1356
DinI GGCGCC 1 cut(s) 396
DrdI GACNNNNNNGTC 2 cut(s) 580, 2877
DseDI GACNNNNNNGTC 2 cut(s) 580, 2877
Eam1104I CTCTTC 4 cut(s) 357, 426, 509, 3111
EarI CTCTTC 4 cut(s) 357, 426, 509, 3111
Eco130I CCWWGG 2 cut(s) 426, 2209
Eco147I AGGCCT 1 cut(s) 1053
Eco24I GRGCYC 1 cut(s) 284
Eco32I GATATC 1 cut(s) 994
Eco47I GGWCC 2 cut(s) 70, 911
Eco47III AGCGCT 1 cut(s) 970
Eco57I CTGAAG 2 cut(s) 687, 3000
Eco72I CACGTG 1 cut(s) 3055
Eco88I CYCGRG 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 1992
EcoRI GAATTC 1 cut(s) 1203
EcoRII CCWGG 3 cut(s) 688, 1645, 2177
EcoRV GATATC 1 cut(s) 994
EcoT14I CCWWGG 2 cut(s) 426, 2209
EcoT22I ATGCAT 1 cut(s) 1329
EcoT38I GRGCYC 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 396
EheI GGCGCC 1 cut(s) 396
ErhI CCWWGG 2 cut(s) 426, 2209
Esp3I CGTCTC 1 cut(s) 498
FalI AAGNNNNNCTT 2 cut(s) 2733, 2765
FaqI GGGAC 5 cut(s) 83, 670, 749, 1759, 2464
FauI CCCGC 1 cut(s) 1246
FbaI TGATCA 3 cut(s) 946, 952, 1033
FblI GTMKAC 3 cut(s) 416, 770, 1440
Fnu4HI GCNGC 9 cut(s) 601, 1631, 1763, 1895, 2015, 2514, 2917, 2962, 2965
FokI GGATG 9 cut(s) 239, 1891, 2011, 2063, 2320, 2369, 2459, 2515, 2645
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 9 cut(s) 601, 1631, 1763, 1895, 2015, 2514, 2917, 2962, 2965
GlaI GCGC 7 cut(s) 33, 396, 796, 970, 1266, 1308, 2968
GluI GCNGC 9 cut(s) 601, 1631, 1763, 1895, 2015, 2514, 2917, 2962, 2965
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 3 cut(s) 398, 798, 972
HaeIII GGCC 3 cut(s) 26, 1053, 1194
HapII CCGG 5 cut(s) 67, 73, 841, 1026, 1304
HgaI GACGC 1 cut(s) 1761
HhaI GCGC 7 cut(s) 34, 397, 797, 971, 1267, 1309, 2969
Hin1I GRCGYC 2 cut(s) 395, 413
Hin6I GCGC 7 cut(s) 32, 395, 795, 969, 1265, 1307, 2967
HinP1I GCGC 7 cut(s) 32, 395, 795, 969, 1265, 1307, 2967
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 1981
HpaII CCGG 5 cut(s) 67, 73, 841, 1026, 1304
HphI GGTGA 7 cut(s) 148, 260, 642, 704, 1065, 1391, 2167
Hpy166II GTNNAC 9 cut(s) 417, 771, 1159, 1297, 1441, 1559, 1694, 1946, 2626
Hpy8I GTNNAC 9 cut(s) 417, 771, 1159, 1297, 1441, 1559, 1694, 1946, 2626
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 408, 862
HpyCH4III ACNGT 6 cut(s) 654, 1171, 2320, 2540, 2803, 2885
HpyCH4IV ACGT 4 cut(s) 413, 1012, 1237, 3054
HpyF10VI GCNNNNNNNGC 9 cut(s) 84, 677, 1077, 1123, 1132, 1228, 1516, 2706, 2973
HpyF3I CTNAG 5 cut(s) 606, 1176, 1217, 1331, 1356
HpySE526I ACGT 4 cut(s) 413, 1012, 1237, 3054
Hsp92I GRCGYC 2 cut(s) 395, 413
HspAI GCGC 7 cut(s) 32, 395, 795, 969, 1265, 1307, 2967
KasI GGCGCC 1 cut(s) 394
KpnI GGTACC 1 cut(s) 2740
Ksp22I TGATCA 3 cut(s) 946, 952, 1033
Lsp1109I GCAGC 9 cut(s) 587, 1642, 1774, 1906, 2026, 2500, 2928, 2973, 2976
MaeII ACGT 4 cut(s) 413, 1012, 1237, 3054
MaeIII GTNAC 8 cut(s) 331, 799, 1008, 1127, 2065, 2173, 2595, 2879
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 2 cut(s) 1313, 2140
MhlI GDGCHC 2 cut(s) 284, 1047
MluCI AATT 8 cut(s) 342, 504, 547, 844, 1203, 1340, 2671, 2758
Mly113I GGCGCC 1 cut(s) 395
MlyI GAGTC 4 cut(s) 692, 731, 776, 2603
MmeI TCCRAC 2 cut(s) 2258, 2522
Mph1103I ATGCAT 1 cut(s) 1329
MroXI GAANNNNTTC 4 cut(s) 1640, 1983, 2284, 2479
MseI TTAA 6 cut(s) 1494, 1617, 1749, 1881, 2001, 2751
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 5 cut(s) 67, 73, 841, 1026, 1304
MspR9I CCNGG 5 cut(s) 68, 690, 1027, 1647, 2179
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 3 cut(s) 690, 1647, 2179
MvnI CGCG 1 cut(s) 2349
MwoI GCNNNNNNNGC 9 cut(s) 84, 677, 1077, 1123, 1132, 1228, 1516, 2706, 2973
NarI GGCGCC 1 cut(s) 395
NciI CCSGG 2 cut(s) 68, 1027
NlaIV GGNNCC 7 cut(s) 71, 178, 216, 396, 521, 912, 2738
NmeAIII GCCGAG 1 cut(s) 371
NmuCI GTSAC 6 cut(s) 331, 1127, 2065, 2173, 2595, 2879
NruI TCGCGA 1 cut(s) 2349
NsiI ATGCAT 1 cut(s) 1329
NspI RCATGY 4 cut(s) 293, 2880, 3008, 3158
PaeI GCATGC 1 cut(s) 293
PagI TCATGA 1 cut(s) 949
PceI AGGCCT 1 cut(s) 1053
PciI ACATGT 3 cut(s) 2876, 3004, 3154
PdmI GAANNNNTTC 4 cut(s) 1640, 1983, 2284, 2479
PfeI GAWTC 9 cut(s) 121, 533, 587, 815, 851, 2306, 2324, 2402, 2932
PinAI ACCGGT 1 cut(s) 72
PkrI GCNGC 9 cut(s) 602, 1632, 1764, 1896, 2016, 2515, 2918, 2963, 2966
PleI GAGTC 4 cut(s) 691, 731, 775, 2602
PluTI GGCGCC 1 cut(s) 398
PmaCI CACGTG 1 cut(s) 3055
PmlI CACGTG 1 cut(s) 3055
PpsI GAGTC 4 cut(s) 691, 731, 775, 2602
Ppu21I YACGTR 2 cut(s) 1013, 3055
PscI ACATGT 3 cut(s) 2876, 3004, 3154
PsiI TTATAA 1 cut(s) 1067
Psp6I CCWGG 3 cut(s) 688, 1645, 2177
PspCI CACGTG 1 cut(s) 3055
PspGI CCWGG 3 cut(s) 688, 1645, 2177
PspN4I GGNNCC 7 cut(s) 71, 178, 216, 396, 521, 912, 2738
PspPI GGNCC 2 cut(s) 70, 911
PstI CTGCAG 2 cut(s) 117, 2518
PstNI CAGNNNCTG 3 cut(s) 590, 1516, 2978
PsuI RGATCY 2 cut(s) 1313, 2140
RruI TCGCGA 1 cut(s) 2349
RsaI GTAC 8 cut(s) 1348, 1914, 2034, 2738, 3009, 3015, 3159, 3165
RsaNI GTAC 8 cut(s) 1347, 1913, 2033, 2737, 3008, 3014, 3158, 3164
RseI CAYNNNNRTG 1 cut(s) 158
SalI GTCGAC 1 cut(s) 415
SaqAI TTAA 6 cut(s) 1494, 1617, 1749, 1881, 2001, 2751
SatI GCNGC 9 cut(s) 601, 1631, 1763, 1895, 2015, 2514, 2917, 2962, 2965
Sau96I GGNCC 2 cut(s) 70, 911
ScaI AGTACT 2 cut(s) 1914, 2034
SchI GAGTC 4 cut(s) 692, 731, 776, 2603
ScrFI CCNGG 5 cut(s) 68, 690, 1027, 1647, 2179
SduI GDGCHC 2 cut(s) 284, 1047
SfcI CTRYAG 3 cut(s) 113, 2319, 2514
SfoI GGCGCC 1 cut(s) 396
SinI GGWCC 2 cut(s) 70, 911
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 125, 2434
SmoI CTYRAG 2 cut(s) 125, 2434
SpeI ACTAGT 2 cut(s) 1349, 2099
SphI GCATGC 1 cut(s) 293
Sse9I AATT 8 cut(s) 342, 504, 547, 844, 1203, 1340, 2671, 2758
SseBI AGGCCT 1 cut(s) 1053
SsiI CCGC 3 cut(s) 64, 1162, 1253
SspDI GGCGCC 1 cut(s) 394
StuI AGGCCT 1 cut(s) 1053
StyD4I CCNGG 5 cut(s) 66, 688, 1025, 1645, 2177
StyI CCWWGG 2 cut(s) 426, 2209
TaaI ACNGT 6 cut(s) 654, 1171, 2320, 2540, 2803, 2885
TaiI ACGT 4 cut(s) 416, 1015, 1240, 3057
TasI AATT 8 cut(s) 342, 504, 547, 844, 1203, 1340, 2671, 2758
TatI WGTACW 4 cut(s) 1912, 2032, 3007, 3157
TfiI GAWTC 9 cut(s) 121, 533, 587, 815, 851, 2306, 2324, 2402, 2932
Tru1I TTAA 6 cut(s) 1494, 1617, 1749, 1881, 2001, 2751
Tru9I TTAA 6 cut(s) 1494, 1617, 1749, 1881, 2001, 2751
TscAI CASTG 9 cut(s) 165, 1158, 1433, 1474, 1597, 2295, 2692, 2890, 2983
TseFI GTSAC 6 cut(s) 331, 1127, 2065, 2173, 2595, 2879
TseI GCWGC 9 cut(s) 600, 1630, 1762, 1894, 2014, 2513, 2916, 2961, 2964
Tsp45I GTSAC 6 cut(s) 331, 1127, 2065, 2173, 2595, 2879
TspDTI ATGAA 7 cut(s) 792, 2376, 2475, 2523, 2562, 2945, 3108
TspGWI ACGGA 3 cut(s) 990, 2676, 2719
TspRI CASTG 9 cut(s) 165, 1158, 1433, 1474, 1597, 2295, 2692, 2890, 2983
VpaK11BI GGWCC 2 cut(s) 70, 911
XagI CCTNNNNNAGG 1 cut(s) 1992
XapI RAATTY 4 cut(s) 504, 844, 1203, 1340
XceI RCATGY 4 cut(s) 293, 2880, 3008, 3158
XcmI CCANNNNNNNNNTGG 2 cut(s) 478, 2709
XmiI GTMKAC 3 cut(s) 416, 770, 1440
XmnI GAANNNNTTC 4 cut(s) 1640, 1983, 2284, 2479
ZraI GACGTC 1 cut(s) 414
ZrmI AGTACT 2 cut(s) 1914, 2034
Zsp2I ATGCAT 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.