Rorug05G0069200

GPI-anchored adhesin-like protein PGA55

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011156
Physical Location & Seq
Reverse (-)
5923427 .. 5924104
678 bp
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UTR
Exon/CDS
Intron
Rorug05G0069200.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACCAAGCAAACCGCCCGCAAGTCCACCGGAGGCAAGGCGCCACGTAAGCAGCTTGCCACCAAGGCCGCTAGGAAGTCCGCTCCGGCCACCGGCGGAGTGAAGAAGCCACACAGATTCAGGCCGGGAACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTCCCATTCCAGCGCTTGGTCCGTGAAATCGCTCAGGATTTCAAGACCGATCTGAGGTTCCAGAGCTCCGCCGTGGCGGCGCTGCAGGAGGCGGCGGAGGCCTACCTCGTCGGGCTCTTTGAGGACACCAATCTGTGTGCCATTCATGCCAAGAGGGTTACGATCATGCCGAAGGATATCCAGCTCGCTAGGCGCATCAGGGGTGAGCGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34920
fragaria_vesca FvH4_3g13290 FvH4_3g13290
malus_domestica MD05G1243100.v1.1 MD10G1225200.v1.1
prunus_persica Prupe.4G120300_v2.0.a1 Prupe.4G120300_v2.0.a1
pyrus_communis pycom10g18910
rosa_chinensis RchiOBHm_Chr5g0021761
rosa_laevigata RLG00000032625
rosa_multiflora Rmu_ssc0000233.1_g000006
rosa_roxburghii Rroxscaffold_1G00056950
rosa_rugosa Rorug05G0069000 Rorug05G0069100 Rorug05G0069200
rosa_samantha Rh5AG157700 Rh5BG157300 Rh5CG171500 Rh5DG157600
rosa_wichuraiana Rw5G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 89
AccII CGCG 2 cut(s) 143, 405
AclWI GGATC 2 cut(s) 148, 181
AcoI YGGCCR 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 2 cut(s) 10, 164
AfeI AGCGCT 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 98, 211, 249
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 5 cut(s) 61, 181, 196, 261, 379
AluI AGCT 5 cut(s) 61, 181, 196, 261, 379
Alw21I GWGCWC 2 cut(s) 176, 263
AlwI GGATC 2 cut(s) 148, 181
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 4 cut(s) 72, 93, 128, 294
ApeKI GCWGC 2 cut(s) 58, 277
AspLEI GCGC 7 cut(s) 49, 145, 210, 277, 390, 405, 407
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 263, 312
Bbv12I GWGCWC 2 cut(s) 176, 263
BbvI GCAGC 2 cut(s) 70, 264
BceAI ACGGC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 2 cut(s) 78, 384
BfmI CTRYAG 1 cut(s) 278
BfoI RGCGCY 3 cut(s) 50, 211, 278
BglI GCCNNNNNGGC 2 cut(s) 71, 272
BisI GCNGC 5 cut(s) 59, 75, 273, 278, 288
BlsI GCNGC 5 cut(s) 60, 76, 274, 279, 289
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 48, 136, 254
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 69, 267
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 211, 249
Bse118I RCCGGY 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 69, 267
BseLI CCNNNNNNNGG 3 cut(s) 98, 211, 249
BseMII CTCAG 3 cut(s) 168, 239, 242
BsePI GCGCGC 1 cut(s) 403
BseXI GCAGC 2 cut(s) 70, 264
Bsh1236I CGCG 2 cut(s) 143, 405
BshFI GGCC 4 cut(s) 74, 95, 130, 296
BshNI GGYRCC 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 176, 263
BsiSI CCGG 4 cut(s) 36, 92, 99, 131
BslI CCNNNNNNNGG 3 cut(s) 98, 211, 249
BsnI GGCC 4 cut(s) 74, 95, 130, 296
Bsp1286I GDGCHC 3 cut(s) 176, 263, 312
Bsp143I GATC 4 cut(s) 153, 186, 244, 357
BspANI GGCC 4 cut(s) 74, 95, 130, 296
BspCNI CTCAG 3 cut(s) 169, 240, 241
BspFNI CGCG 2 cut(s) 143, 405
BspLI GGNNCC 3 cut(s) 48, 136, 254
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 2 cut(s) 148, 181
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 69, 267
BssHII GCGCGC 1 cut(s) 403
BssMI GATC 4 cut(s) 153, 186, 244, 357
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 5 cut(s) 25, 63, 194, 381, 405
BstDEI CTNAG 3 cut(s) 177, 228, 248
BstDSI CCRYGG 1 cut(s) 267
BstFNI CGCG 2 cut(s) 143, 405
BstH2I RGCGCY 3 cut(s) 50, 211, 278
BstHHI GCGC 7 cut(s) 49, 145, 210, 277, 390, 405, 407
BstKTI GATC 4 cut(s) 156, 189, 247, 360
BstMBI GATC 4 cut(s) 153, 186, 244, 357
BstMWI GCNNNNNNNGC 6 cut(s) 55, 71, 272, 293, 341, 385
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 278
BstUI CGCG 2 cut(s) 143, 405
BstV1I GCAGC 2 cut(s) 70, 264
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 4 cut(s) 74, 95, 130, 296
BtgI CCRYGG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 5 cut(s) 25, 63, 194, 381, 405
CfoI GCGC 7 cut(s) 49, 145, 210, 277, 390, 405, 407
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 9, 163
CviAII CATG 2 cut(s) 341, 361
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 3 cut(s) 177, 228, 248
DinI GGCGCC 1 cut(s) 48
DpnI GATC 4 cut(s) 155, 188, 246, 359
DpnII GATC 4 cut(s) 153, 186, 244, 357
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 3 cut(s) 117, 253, 305
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 2 cut(s) 263, 312
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 214
Eco47III AGCGCT 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 261
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 263, 312
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 344, 364
FaiI YATR 2 cut(s) 342, 362
FatI CATG 2 cut(s) 340, 360
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 5 cut(s) 59, 75, 273, 278, 288
FriOI GRGCYC 2 cut(s) 263, 312
Fsp4HI GCNGC 5 cut(s) 59, 75, 273, 278, 288
FspBI CTAG 2 cut(s) 78, 384
GlaI GCGC 7 cut(s) 48, 144, 209, 276, 389, 404, 406
GluI GCNGC 5 cut(s) 59, 75, 273, 278, 288
HaeII RGCGCY 3 cut(s) 50, 211, 278
HaeIII GGCC 4 cut(s) 74, 95, 130, 296
HapII CCGG 4 cut(s) 36, 92, 99, 131
HhaI GCGC 7 cut(s) 49, 145, 210, 277, 390, 405, 407
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 2 cut(s) 344, 364
Hin6I GCGC 7 cut(s) 47, 143, 208, 275, 388, 403, 405
HinP1I GCGC 7 cut(s) 47, 143, 208, 275, 388, 403, 405
HinfI GANTC 1 cut(s) 123
HpaII CCGG 4 cut(s) 36, 92, 99, 131
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 3 cut(s) 230, 238, 256
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 2 cut(s) 143, 308
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 71, 272, 293, 341, 385
HpyF3I CTNAG 3 cut(s) 177, 228, 248
HpySE526I ACGT 1 cut(s) 52
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 344, 364
HspAI GCGC 7 cut(s) 47, 143, 208, 275, 388, 403, 405
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 153, 186, 244, 357
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 4 cut(s) 94, 150, 201, 266
Lsp1109I GCAGC 2 cut(s) 70, 264
LweI GCATC 1 cut(s) 399
MaeI CTAG 2 cut(s) 78, 384
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 352
MalI GATC 4 cut(s) 155, 188, 246, 359
MbiI CCGCTC 1 cut(s) 89
MboI GATC 4 cut(s) 153, 186, 244, 357
MboII GAAGA 2 cut(s) 121, 181
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 3 cut(s) 176, 263, 312
Mly113I GGCGCC 1 cut(s) 47
MnlI CCTC 7 cut(s) 32, 243, 277, 286, 310, 311, 342
MspI CCGG 4 cut(s) 36, 92, 99, 131
MspR9I CCNGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 143, 405
MwoI GCNNNNNNNGC 6 cut(s) 55, 71, 272, 293, 341, 385
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 1 cut(s) 132
NdeII GATC 4 cut(s) 153, 186, 244, 357
NlaIII CATG 2 cut(s) 344, 364
NlaIV GGNNCC 3 cut(s) 48, 136, 254
PauI GCGCGC 1 cut(s) 403
PceI AGGCCT 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 5 cut(s) 60, 76, 274, 279, 289
PluTI GGCGCC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 53
Psp124BI GAGCTC 1 cut(s) 263
PspN4I GGNNCC 3 cut(s) 48, 136, 254
PspPI GGNCC 1 cut(s) 214
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 1 cut(s) 153
PteI GCGCGC 1 cut(s) 403
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 273, 278, 288
Sau3AI GATC 4 cut(s) 153, 186, 244, 357
Sau96I GGNCC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 3 cut(s) 176, 263, 312
SetI ASST 8 cut(s) 55, 63, 183, 198, 254, 263, 303, 381
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 278
SfoI GGCGCC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 98
SinI GGWCC 1 cut(s) 214
SseBI AGGCCT 1 cut(s) 296
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 2 cut(s) 78, 384
SstI GAGCTC 1 cut(s) 263
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 55
TaqII GACCGA 1 cut(s) 257
TauI GCSGC 3 cut(s) 77, 275, 290
TfiI GAWTC 1 cut(s) 123
TscAI CASTG 1 cut(s) 181
TseI GCWGC 2 cut(s) 58, 277
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 137, 206
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 2 cut(s) 78, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.