Rroxscaffold_2G00100960

Protein of unknown function (DUF1296)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005772
Physical Location & Seq
Reverse (-)
22938459 .. 22947951
9493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100960.1

Sequence Viewer

Length: 2754 bp
ATGGTCTCTGGGTCGCGAATCGAAGGTGGTGGGACTCAGATAATCTCCGCCGGAGTGAGGAAAACCATCCAATCCATCAAAGAAATAGTGGGCAATCACTCTGATATTGATATCTATTGGGCTCTCAAAGAGACCGATATGGATCCTAATGAAACTACCCAGAAATTACTCAACCAAGACCCATTTCATGAGGTGAAGAGAAAAAGAGACAAAAAGAAGGACGTGTCACCTAAGAGTATCGGGCAAAAGGTTCCTACTGAGCCAAGAAGACATTTTGAGAGTGCTGGTCAAGGACCAAGATCAAATACAATTTCGGATCGTATTGTGGAGCCTAAAAGACATTTTGAGAGTGCAGGTCAAGGACCTAGATCAAATACAATTTCTGATCGTAATGTCGAGCCTAGAAGGCATTTTGACAGTGCAGGTCAAGGACCAAAATCTAATTCATTTTCTGATCGAAATGTTGAGCCAAGAAGACATTTTGAGAGTGCAGGTCAAGGACCAAGACATAATTCATTTTCTGATCGTAATGTTAGAAGAGGAGGTTATGTGCGCAGGGGTTTACCTGGAATCAGCAGAGAGTTTCGTGTTGTGAGGGACAACAGAGCTAACCAAAATATGGATGGAGAAATTAAGTCTGCTTCACCTCAATGTACTACATCCACCAACGAGCAAGTGATTTCAAATGTTTCTGAGAAGGGCCAAACAGGAAATTCAAGCAGTCAAAAGCTATCTAATAGACAGCATTCCTCTCAAGCATTGAATGGGCAAACTGATTCTCGAATGAGAACGAACGTTGCTAATTCAACTGGTATGATTAGAAAGGAGACATTAGTGGAGAAGCGAGTTGCTTTTCCAAATTCAGTTTCACGGGTACAAGCAGGGAAACCAAACAACTCCCAACCACATTCTGCATCAAGCACTTCTGTTATTGGGCTGTATTCCTCGTCCACAGATCCTGTTCATGTGCCGTCTCCTGATTCTAGACCATCTGCTTCTGTTGGTGCAATTAAGCGTGAAGTTGGGGTGGTTGGTGTTCGGAAACAGTCTTCTGACAACTCCAAGTCAGCTGTACCAAGTAGTTCTTTCTCTAATTCACTTTTGGGAAAAGAGGGCTCTGCAGAATCATTTAGATCTTTCACTGGTATCTCTAAACCTGATCAACTCAGCCAAACTTCTGAATCTGTGATGCCTAGCATGCCGGTCAGCAGATCTTTCGTAAGTAATCAGCACAATGTCAGGGCGCATCAACAACCTGTGGGTCATCAGAAAGATGCAGCTTCCCAGCCTAACAAGGAGTGGAAACCTAAATCAAGTCAGAAGCCAAGCCCTAATAGTCCTGGAGTCATTGGAACACCAACAAAATCTGCTTCTCCTCTTTCTGATGATTCAAAGGTCTCAGAGTCAGAAGAGGCCAAGTTGCAAGATAAGCTTGCCCGAGTAAATATATATGAGAACTGTAATGTTGTGATAGCGCAAAATATTAGAGTCCCTGAGAGTGACCGTTTTCAGCTAACCTTTGGAAGCTTGGGGACAGAGTTTGATTCAACAGGAAACACAGTTAACGGATTTCAAGCTGGAGCTGCGGAGGAGTTGAACAGGGAACCTCCAGCAAGTTTGTCAACATCAGCTCCTGAGTCGCGCAGTGATGAGGCTTCCGGCACGAAGCCGGTAGATTTATTAGATGACCAAGTTCGAAATTCTGGATCTGATTTTTCGGCACCGTCTGCGCCTGAGCATTTACCTGAGAAAAAAGAGACCTCAAGTCCTCAGAGTTTGGACAATTATGCAGATATTGGTTTGGTTCGAGACAACAGTCCGTCCTTTGCACCTTCAGATTCGCAGCACCAAGATCCACCAGAGTTACAAGGTTTTACGGCATTTGATCCTCAGACTGGTTATGATATACCTTATTACAGACCCAGTATGGATGAAAGTGTTCGCGGACAGGGTCTACCGTCTCCTCAGGAGGCTTTGAGTTCACATAATGCCAACAGTATTCCTGCATCAACAGTTGCCATGGTACAACAGCAACCACCGCATGTGGCGCAGATGTACCCACAAGTTCATGTTTCACATTATGCTAATCTTATGCCATATCGTCAGTTTATCTCACCAGTATATGTTCCACCAATGGCTGTGCCTGGCTATTCCAATAATCCTGCCTATCCTCACATGTCTAATGGCAACAGCTACTTGCTGATGCCTGGAGGTGGTTCCCACCTAAATGCAAACAGCCTCAAGTATGGAGTTCAGCAATTTAAGCCCGTCCCTGCTGGAAGTCCCACTGGGTTTGGAAATTTTACTAACCCAGCAGGTTATGCAATGAATGCCCCTGGTGTAGTTGGAGGTGCCACTGGACTCGAAGATTCATCAAGAATGAAGTACAAAGATGGCAATCTTTATGTTCCAAATCCACAGGCGGAGACATCAGAGATTTGGATTCAGAACCCAAGGGAGCATCCAGGAATGCAATCCACTCCATACTACAACATGCCTGGGCAAACACCTCATGCTCCTTATATGCCGTCCCACGCCAGCCACGCTTCCTTTAATGCAGCTGCAGCACAATCTTCGCACATGCAATTCCCGGGAATGTACCATCCTCCTCAGCCTGCTGCAATGGCCAGTCCGCACCATATGGGCCCTGCTATGCCCGGCAATGTCGGAGTGGGGGTGGCCGCAGCTGCTCCTGGGGCACAGGCATATCAGCAGCCCCAGTTGAATCATATGAACTGGACAACAAACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1296

Protein Analysis

917

Amino Acids

99.15

Weight (kDa)

8.85

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIP1_N PF06972 15 - 73 5.5e-30 GBF-interacting protein 1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 554
Acc36I ACCTGC 4 cut(s) 344, 413, 482, 2306
AccB1I GGYRCC 2 cut(s) 1720, 2351
AccB7I CCANNNNNTGG 1 cut(s) 619
AccI GTMKAC 1 cut(s) 1954
AccII CGCG 3 cut(s) 16, 1642, 1944
AciI CCGC 7 cut(s) 48, 1586, 1944, 2039, 2423, 2633, 2682
AclI AACGTT 1 cut(s) 795
AclWI GGATC 7 cut(s) 137, 150, 324, 950, 1714, 1847, 1880
AcoI YGGCCR 2 cut(s) 2625, 2679
AcsI RAATTY 4 cut(s) 712, 859, 1699, 2299
AcuI CTGAAG 1 cut(s) 1818
AfaI GTAC 7 cut(s) 655, 876, 1074, 2025, 2057, 2387, 2600
AfiI CCNNNNNNNGG 4 cut(s) 57, 619, 1895, 2213
AflIII ACRYGT 2 cut(s) 222, 2175
AgsI TTSAA 9 cut(s) 684, 717, 763, 807, 1392, 1548, 1574, 1597, 2725
AhdI GACNNNNNGTC 1 cut(s) 1764
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 8 cut(s) 565, 1339, 2143, 2206, 2335, 2464, 2497, 2692
AjuI GAANNNNNNNTTGG 8 cut(s) 168, 200, 427, 459, 496, 528, 850, 882
AlwI GGATC 7 cut(s) 137, 150, 324, 950, 1714, 1847, 1880
AlwNI CAGNNNCTG 2 cut(s) 959, 1634
Ama87I CYCGRG 2 cut(s) 1437, 2590
AoxI GGCC 5 cut(s) 700, 1413, 2625, 2644, 2679
ApaI GGGCCC 1 cut(s) 2648
ApoI RAATTY 4 cut(s) 712, 859, 1699, 2299
Asp700I GAANNNNTTC 1 cut(s) 1938
AspLEI GCGC 6 cut(s) 555, 1246, 1477, 1644, 1732, 2050
AspS9I GGNCC 7 cut(s) 293, 362, 431, 500, 700, 2644, 2645
AsuC2I CCSGG 3 cut(s) 2591, 2592, 2658
AsuHPI GGTGA 4 cut(s) 205, 219, 636, 2106
AsuII TTCGAA 1 cut(s) 1696
AvaI CYCGRG 2 cut(s) 1437, 2590
AvaII GGWCC 4 cut(s) 293, 362, 431, 500
AxyI CCTNAGG 1 cut(s) 1965
BaeGI GKGCMC 2 cut(s) 2648, 2701
BalI TGGCCA 1 cut(s) 2627
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 2 cut(s) 1720, 2351
BanII GRGCYC 3 cut(s) 124, 1118, 2648
BbsI GAAGAC 3 cut(s) 274, 481, 1041
BbvCI CCTCAGC 1 cut(s) 2610
BccI CCATC 6 cut(s) 74, 83, 617, 997, 2387, 2610
BceAI ACGGC 3 cut(s) 955, 1893, 2512
BcgI CGANNNNNNTGC 4 cut(s) 1198, 1232, 2556, 2590
BciT130I CCWGG 8 cut(s) 567, 1341, 2145, 2208, 2337, 2466, 2499, 2694
BclI TGATCA 1 cut(s) 1159
BcnI CCSGG 3 cut(s) 2591, 2592, 2658
BfaI CTAG 4 cut(s) 366, 402, 984, 1194
BfmI CTRYAG 2 cut(s) 1119, 2562
BfuAI ACCTGC 4 cut(s) 344, 413, 482, 2306
BglI GCCNNNNNGGC 1 cut(s) 406
BglII AGATCT 2 cut(s) 1133, 1211
Bme18I GGWCC 4 cut(s) 293, 362, 431, 500
BmeRI GACNNNNNGTC 1 cut(s) 1764
BmeT110I CYCGRG 2 cut(s) 1437, 2590
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 7 cut(s) 293, 362, 431, 500, 700, 2644, 2645
BmiI GGNNCC 8 cut(s) 144, 252, 330, 1605, 1722, 2218, 2353, 2646
BmrI ACTGGG 3 cut(s) 1917, 2298, 2713
BmsI GCATC 7 cut(s) 923, 1179, 1255, 1264, 2015, 2193, 2470
BmuI ACTGGG 3 cut(s) 1917, 2298, 2713
BoxI GACNNNNGTC 1 cut(s) 1815
BpiI GAAGAC 3 cut(s) 274, 481, 1041
BpmI CTGGAG 4 cut(s) 1362, 1593, 1599, 2229
Bpu10I CCTNAGC 2 cut(s) 1734, 2610
Bpu14I TTCGAA 1 cut(s) 1696
BpuEI CTTGAG 3 cut(s) 738, 1747, 2225
BpuMI CCSGG 3 cut(s) 2591, 2592, 2658
BsaBI GATNNNNATC 2 cut(s) 141, 2397
BsaI GGTCTC 4 cut(s) 10, 125, 1402, 1751
BsaJI CCNNGG 6 cut(s) 2019, 2335, 2453, 2498, 2590, 2693
BsaXI ACNNNNNCTCC 6 cut(s) 534, 564, 1615, 1645, 2661, 2691
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 619, 1895, 2213
Bse118I RCCGGY 2 cut(s) 1201, 1669
Bse21I CCTNAGG 1 cut(s) 1965
Bse3DI GCAATG 3 cut(s) 2331, 2628, 2668
Bse8I GATNNNNATC 2 cut(s) 141, 2397
BseBI CCWGG 8 cut(s) 567, 1341, 2145, 2208, 2337, 2466, 2499, 2694
BseDI CCNNGG 6 cut(s) 2019, 2335, 2453, 2498, 2590, 2693
BseGI GGATG 6 cut(s) 66, 628, 659, 1936, 2461, 2602
BseJI GATNNNNATC 2 cut(s) 141, 2397
BseLI CCNNNNNNNGG 4 cut(s) 57, 619, 1895, 2213
BseMI GCAATG 3 cut(s) 2331, 2628, 2668
BseRI GAGGAG 5 cut(s) 555, 1365, 1604, 1953, 2598
BseSI GKGCMC 2 cut(s) 2648, 2701
BseYI CCCAGC 2 cut(s) 1284, 2311
BsgI GTGCAG 3 cut(s) 372, 441, 510
Bsh1236I CGCG 3 cut(s) 16, 1642, 1944
BshFI GGCC 5 cut(s) 702, 1415, 2627, 2646, 2681
BshNI GGYRCC 2 cut(s) 1720, 2351
BsiHKCI CYCGRG 2 cut(s) 1437, 2590
BsiSI CCGG 6 cut(s) 51, 1202, 1659, 1670, 2591, 2658
BslFI GGGAC 7 cut(s) 46, 611, 1475, 1546, 2255, 2268, 2515
BslI CCNNNNNNNGG 4 cut(s) 57, 619, 1895, 2213
BsmBI CGTCTC 2 cut(s) 978, 1965
BsmFI GGGAC 7 cut(s) 46, 611, 1475, 1546, 2255, 2268, 2515
BsmI GAATGC 3 cut(s) 745, 2335, 2475
BsnI GGCC 5 cut(s) 702, 1415, 2627, 2646, 2681
Bso31I GGTCTC 4 cut(s) 10, 125, 1402, 1751
BsoBI CYCGRG 2 cut(s) 1437, 2590
Bsp119I TTCGAA 1 cut(s) 1696
Bsp120I GGGCCC 1 cut(s) 2644
Bsp1286I GDGCHC 4 cut(s) 124, 1118, 2648, 2701
Bsp19I CCATGG 1 cut(s) 2019
Bsp68I TCGCGA 1 cut(s) 16
BspACI CCGC 7 cut(s) 48, 1586, 1944, 2039, 2423, 2633, 2682
BspANI GGCC 5 cut(s) 702, 1415, 2627, 2646, 2681
BspFNI CGCG 3 cut(s) 16, 1642, 1944
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 8 cut(s) 144, 252, 330, 1605, 1722, 2218, 2353, 2646
BspMAI CTGCAG 2 cut(s) 1123, 2566
BspMI ACCTGC 4 cut(s) 344, 413, 482, 2306
BspPI GGATC 7 cut(s) 137, 150, 324, 950, 1714, 1847, 1880
BspT104I TTCGAA 1 cut(s) 1696
BspT107I GGYRCC 2 cut(s) 1720, 2351
BspTNI GGTCTC 4 cut(s) 10, 125, 1402, 1751
BsrDI GCAATG 3 cut(s) 2331, 2628, 2668
BsrFI RCCGGY 2 cut(s) 1201, 1669
BssAI RCCGGY 2 cut(s) 1201, 1669
BssECI CCNNGG 6 cut(s) 2019, 2335, 2453, 2498, 2590, 2693
BssT1I CCWWGG 2 cut(s) 2019, 2453
Bst2UI CCWGG 8 cut(s) 567, 1341, 2145, 2208, 2337, 2466, 2499, 2694
Bst6I CTCTTC 3 cut(s) 191, 532, 1404
BstAPI GCANNNNNTGC 3 cut(s) 1727, 2321, 2330
BstBI TTCGAA 1 cut(s) 1696
BstC8I GCNNGC 4 cut(s) 1199, 1434, 2539, 2616
BstDSI CCRYGG 1 cut(s) 2019
BstF5I GGATG 6 cut(s) 66, 628, 659, 1936, 2461, 2602
BstFNI CGCG 3 cut(s) 16, 1642, 1944
BstHHI GCGC 6 cut(s) 555, 1246, 1477, 1644, 1732, 2050
BstNI CCWGG 8 cut(s) 567, 1341, 2145, 2208, 2337, 2466, 2499, 2694
BstNSI RCATGY 5 cut(s) 1201, 2045, 2179, 2497, 2584
BstPAI GACNNNNGTC 1 cut(s) 1815
BstSFI CTRYAG 2 cut(s) 1119, 2562
BstSLI GKGCMC 2 cut(s) 2648, 2701
BstUI CGCG 3 cut(s) 16, 1642, 1944
BstV2I GAAGAC 3 cut(s) 274, 481, 1041
BstX2I RGATCY 6 cut(s) 142, 955, 1133, 1211, 1706, 1852
BstYI RGATCY 6 cut(s) 142, 955, 1133, 1211, 1706, 1852
Bsu36I CCTNAGG 1 cut(s) 1965
BsuRI GGCC 5 cut(s) 702, 1415, 2627, 2646, 2681
BtgI CCRYGG 1 cut(s) 2019
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 6 cut(s) 66, 628, 659, 1936, 2461, 2602
BtsI GCAGTG 1 cut(s) 1651
BtsIMutI CAGTG 5 cut(s) 424, 1140, 1651, 2286, 2355
BtuMI TCGCGA 1 cut(s) 16
BveI ACCTGC 4 cut(s) 344, 413, 482, 2306
Cac8I GCNNGC 4 cut(s) 1199, 1434, 2539, 2616
CaiI CAGNNNCTG 2 cut(s) 959, 1634
CciI TCATGA 1 cut(s) 187
CfoI GCGC 6 cut(s) 555, 1246, 1477, 1644, 1732, 2050
Cfr10I RCCGGY 2 cut(s) 1201, 1669
Cfr13I GGNCC 7 cut(s) 293, 362, 431, 500, 700, 2644, 2645
Cfr9I CCCGGG 1 cut(s) 2590
Csp6I GTAC 7 cut(s) 654, 875, 1073, 2024, 2056, 2386, 2599
CspCI CAANNNNNGTGG 2 cut(s) 2275, 2310
CviQI GTAC 7 cut(s) 654, 875, 1073, 2024, 2056, 2386, 2599
DriI GACNNNNNGTC 1 cut(s) 1764
EaeI YGGCCR 2 cut(s) 2625, 2679
Eam1104I CTCTTC 3 cut(s) 191, 532, 1404
Eam1105I GACNNNNNGTC 1 cut(s) 1764
EarI CTCTTC 3 cut(s) 191, 532, 1404
EciI GGCGGA 2 cut(s) 37, 2438
Eco130I CCWWGG 2 cut(s) 2019, 2453
Eco24I GRGCYC 3 cut(s) 124, 1118, 2648
Eco31I GGTCTC 4 cut(s) 10, 125, 1402, 1751
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 4 cut(s) 293, 362, 431, 500
Eco57I CTGAAG 1 cut(s) 1818
Eco81I CCTNAGG 1 cut(s) 1965
Eco88I CYCGRG 2 cut(s) 1437, 2590
EcoO109I RGGNCCY 2 cut(s) 362, 2645
EcoRII CCWGG 8 cut(s) 565, 1339, 2143, 2206, 2335, 2464, 2497, 2692
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 2019, 2453
EcoT38I GRGCYC 3 cut(s) 124, 1118, 2648
ErhI CCWWGG 2 cut(s) 2019, 2453
Esp3I CGTCTC 2 cut(s) 978, 1965
FalI AAGNNNNNCTT 4 cut(s) 1069, 1101, 1416, 1448
FaqI GGGAC 7 cut(s) 46, 611, 1475, 1546, 2255, 2268, 2515
FauNDI CATATG 2 cut(s) 2640, 2730
FbaI TGATCA 1 cut(s) 1159
FblI GTMKAC 1 cut(s) 1954
FokI GGATG 6 cut(s) 53, 635, 646, 1943, 2448, 2589
FriOI GRGCYC 3 cut(s) 124, 1118, 2648
FspBI CTAG 4 cut(s) 366, 402, 984, 1194
FspI TGCGCA 1 cut(s) 554
GlaI GCGC 6 cut(s) 554, 1245, 1476, 1643, 1731, 2049
GsaI CCCAGC 2 cut(s) 1288, 2315
GsuI CTGGAG 4 cut(s) 1362, 1593, 1599, 2229
HaeIII GGCC 5 cut(s) 702, 1415, 2627, 2646, 2681
HapII CCGG 6 cut(s) 51, 1202, 1659, 1670, 2591, 2658
HhaI GCGC 6 cut(s) 555, 1246, 1477, 1644, 1732, 2050
Hin6I GCGC 6 cut(s) 553, 1244, 1475, 1642, 1730, 2048
HinP1I GCGC 6 cut(s) 553, 1244, 1475, 1642, 1730, 2048
HincII GTYRAC 2 cut(s) 1564, 1623
HindII GTYRAC 2 cut(s) 1564, 1623
HindIII AAGCTT 2 cut(s) 1430, 1525
HpaI GTTAAC 1 cut(s) 1564
HpaII CCGG 6 cut(s) 51, 1202, 1659, 1670, 2591, 2658
HphI GGTGA 4 cut(s) 205, 219, 636, 2106
Hpy166II GTNNAC 6 cut(s) 563, 951, 1564, 1623, 1955, 1982
Hpy8I GTNNAC 6 cut(s) 563, 951, 1564, 1623, 1955, 1982
HpyAV CCTTC 5 cut(s) 17, 211, 399, 691, 1842
HpyCH4IV ACGT 2 cut(s) 222, 795
HpySE526I ACGT 2 cut(s) 222, 795
HspAI GCGC 6 cut(s) 553, 1244, 1475, 1642, 1730, 2048
Ksp22I TGATCA 1 cut(s) 1159
KspAI GTTAAC 1 cut(s) 1564
LmnI GCTCC 6 cut(s) 328, 1580, 1636, 2458, 2521, 2695
LweI GCATC 7 cut(s) 923, 1179, 1255, 1264, 2015, 2193, 2470
MaeI CTAG 4 cut(s) 366, 402, 984, 1194
MaeII ACGT 2 cut(s) 222, 795
MaeIII GTNAC 3 cut(s) 225, 1499, 1863
MboII GAAGA 8 cut(s) 208, 279, 486, 549, 1041, 1421, 2378, 2565
MflI RGATCY 6 cut(s) 142, 955, 1133, 1211, 1706, 1852
MhlI GDGCHC 4 cut(s) 124, 1118, 2648, 2701
MlsI TGGCCA 1 cut(s) 2627
MluNI TGGCCA 1 cut(s) 2627
MlyI GAGTC 6 cut(s) 28, 1353, 1412, 1497, 1646, 2355
MmeI TCCRAC 2 cut(s) 2326, 2647
Mox20I TGGCCA 1 cut(s) 2627
MroXI GAANNNNTTC 1 cut(s) 1938
MscI TGGCCA 1 cut(s) 2627
MseI TTAA 5 cut(s) 633, 1011, 1563, 2262, 2553
MslI CAYNNNNRTG 2 cut(s) 649, 2226
Msp20I TGGCCA 1 cut(s) 2627
MspA1I CMGCKG 3 cut(s) 1070, 2561, 2687
MspI CCGG 6 cut(s) 51, 1202, 1659, 1670, 2591, 2658
Mva1269I GAATGC 3 cut(s) 745, 2335, 2475
MvaI CCWGG 8 cut(s) 567, 1341, 2145, 2208, 2337, 2466, 2499, 2694
MvnI CGCG 3 cut(s) 16, 1642, 1944
NciI CCSGG 3 cut(s) 2591, 2592, 2658
NcoI CCATGG 1 cut(s) 2019
NdeI CATATG 2 cut(s) 2640, 2730
NlaIV GGNNCC 8 cut(s) 144, 252, 330, 1605, 1722, 2218, 2353, 2646
NmuCI GTSAC 2 cut(s) 225, 1499
NruI TCGCGA 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 554
NspI RCATGY 5 cut(s) 1201, 2045, 2179, 2497, 2584
NspV TTCGAA 1 cut(s) 1696
PaeI GCATGC 1 cut(s) 1201
PagI TCATGA 1 cut(s) 187
PciI ACATGT 1 cut(s) 2175
PctI GAATGC 3 cut(s) 745, 2335, 2475
PdmI GAANNNNTTC 1 cut(s) 1938
PflFI GACNNNGTC 1 cut(s) 1950
PflMI CCANNNNNTGG 1 cut(s) 619
PfoI TCCNGGA 2 cut(s) 1339, 2464
PleI GAGTC 6 cut(s) 28, 1352, 1411, 1496, 1645, 2355
PpsI GAGTC 6 cut(s) 28, 1352, 1411, 1496, 1645, 2355
PpuMI RGGWCCY 1 cut(s) 362
PscI ACATGT 1 cut(s) 2175
PshAI GACNNNNGTC 1 cut(s) 1815
Psp1406I AACGTT 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 8 cut(s) 565, 1339, 2143, 2206, 2335, 2464, 2497, 2692
PspFI CCCAGC 2 cut(s) 1284, 2311
PspGI CCWGG 8 cut(s) 565, 1339, 2143, 2206, 2335, 2464, 2497, 2692
PspN4I GGNNCC 8 cut(s) 144, 252, 330, 1605, 1722, 2218, 2353, 2646
PspOMI GGGCCC 1 cut(s) 2644
PspPI GGNCC 7 cut(s) 293, 362, 431, 500, 700, 2644, 2645
PspPPI RGGWCCY 1 cut(s) 362
PstI CTGCAG 2 cut(s) 1123, 2566
PstNI CAGNNNCTG 2 cut(s) 959, 1634
PsuI RGATCY 6 cut(s) 142, 955, 1133, 1211, 1706, 1852
PsyI GACNNNGTC 1 cut(s) 1950
PvuII CAGCTG 3 cut(s) 1070, 2561, 2687
RruI TCGCGA 1 cut(s) 16
RsaI GTAC 7 cut(s) 655, 876, 1074, 2025, 2057, 2387, 2600
RsaNI GTAC 7 cut(s) 654, 875, 1073, 2024, 2056, 2386, 2599
RseI CAYNNNNRTG 2 cut(s) 649, 2226
SaqAI TTAA 5 cut(s) 633, 1011, 1563, 2262, 2553
Sau96I GGNCC 7 cut(s) 293, 362, 431, 500, 700, 2644, 2645
SchI GAGTC 6 cut(s) 28, 1353, 1412, 1497, 1646, 2355
SduI GDGCHC 4 cut(s) 124, 1118, 2648, 2701
SfaNI GCATC 7 cut(s) 923, 1179, 1255, 1264, 2015, 2193, 2470
SfcI CTRYAG 2 cut(s) 1119, 2562
SfuI TTCGAA 1 cut(s) 1696
SinI GGWCC 4 cut(s) 293, 362, 431, 500
SmaI CCCGGG 1 cut(s) 2592
SmiMI CAYNNNNRTG 2 cut(s) 649, 2226
SmlI CTYRAG 3 cut(s) 753, 1762, 2240
SmoI CTYRAG 3 cut(s) 753, 1762, 2240
SphI GCATGC 1 cut(s) 1201
SsiI CCGC 7 cut(s) 48, 1586, 1944, 2039, 2423, 2633, 2682
SspI AATATT 1 cut(s) 1483
SspMI CTAG 4 cut(s) 366, 402, 984, 1194
StyI CCWWGG 2 cut(s) 2019, 2453
TaiI ACGT 2 cut(s) 225, 798
TaqI TCGA 7 cut(s) 21, 396, 457, 781, 1696, 1807, 2364
TaqII GACCGA 1 cut(s) 149
TatI WGTACW 2 cut(s) 653, 2385
TauI GCSGC 1 cut(s) 2684
Tru1I TTAA 5 cut(s) 633, 1011, 1563, 2262, 2553
Tru9I TTAA 5 cut(s) 633, 1011, 1563, 2262, 2553
TscAI CASTG 5 cut(s) 424, 1147, 1651, 2293, 2362
TseFI GTSAC 2 cut(s) 225, 1499
Tsp45I GTSAC 2 cut(s) 225, 1499
TspGWI ACGGA 2 cut(s) 1581, 1809
TspMI CCCGGG 1 cut(s) 2590
TspRI CASTG 5 cut(s) 424, 1147, 1651, 2293, 2362
Tth111I GACNNNGTC 1 cut(s) 1950
Van91I CCANNNNNTGG 1 cut(s) 619
VpaK11BI GGWCC 4 cut(s) 293, 362, 431, 500
XapI RAATTY 4 cut(s) 712, 859, 1699, 2299
XbaI TCTAGA 1 cut(s) 983
XceI RCATGY 5 cut(s) 1201, 2045, 2179, 2497, 2584
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmaI CCCGGG 1 cut(s) 2590
XmiI GTMKAC 1 cut(s) 1954
XmnI GAANNNNTTC 1 cut(s) 1938
XspI CTAG 4 cut(s) 366, 402, 984, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.