Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005772

Physical Location & Seq

Genomic Coordinates Forward (+)

66689535 .. 66699890

Gene Structure 10356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG461900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGATGGAGAAATTAAGCCTGCTTCACCTCAATGTACTACATCCACGAACGAGCAAGTGATTTCAAATGTTTCTGAGAAGGGCCAAACAGGAAATTCAAGCAGTCAAAAGCCATCTAATAGACAGCATTCCTCACAAGCATTGAATGGGCAAACTGATTCTCGAATTAGAACGAACGTTGCTAATTCATCTGGTATGATTAGAAAGGAGACATTAGTGGAGAAGCGAGTTGCTCTTCCAAATTCAGTTTCACGGGTACAGGCAGGGAAACCAAACAACTCCCAACCACATTCTGCATCAAGCACTTCTGTTATTGGGGTGTATTCCTCGTCCACAGATCCTGTTCATGTGCCGTCTCCTGATTCTAGACCATCTGCTTCTGTTGGTGCAATTAAGCGCGAAGTTGGGGTGGTTGGAGTTCGGAAACAGTCTTCTGACAACTCCAAGTCAGCTGTACCAAGTAGTTCTTTCTCTAATTCACTTTTGGGAAAAGAGGGCTCTGCAGAATCATTTAGATCTTTCACTGGTATCTCTAAACCTGATCAACTCAGCCAAACTTCTGAATCTGTGATACCGGTCAGCAGATCTTTCGTAAGTAATCAGCACAGTGTCAGGGCGCATCAACAACCTGTGGGTCATCAGAAAGCTTCCCAGCCTAACAAGGAGTGGAAACCTAAATCAAGTCGGAAGCCAAGCCCTAATAGTCCTGGAGTCATTGGAACACCAACAAAATCTGCTTCTCCTCTTTCTGATGATTCAAAGGTCTCAGAGTCAGAAGCAGCTAAGTTGCAAGATAAGCTTGCCCGAGTAAATATATATGAGAACTGTAATGTTGTGATAGCGCAAAATATTAGAGTCCCTGAGAGTGACCGTTTTCGGCTAACCTTTGGAAGCTTGGGGACAGAGTTTGATTCAACAGGAAACACAGTTAATGGATTTCAAGCCGGAGCTGCGGAGGAGTTGAACAGGGAACCTCCAGCAAGTTTGTCAACATCAGCTCCCGAGTCGCGCAGTGATGAGGCTTCCGGCACGAAGCCAGTAGATTTATTAGATGACCAAGTTAGAAATTCTGGATCTGATTTTTCGGCACCGTCTGCAGTGCCTGAGCATTTGCCTGAGAAAAAAGAGACCTCAAGTCCTCAGAGTTTGGACAATTATGCAGATATTGGTTTGGTTCGAGACAACAGTCCGTCCTTTGCACCTTCAGATTCGCAGAACCAAGATCCACCAGAGTTACAAGGTTTTACGGCATTTGATCCTCAGACTGGTTATGATATACCTTATTACAGACCCAGTATGGATGAAAGTGTTTGCGGACAGGGTCTACCATCTCCTCAGGAGGCTTTGAGTTCACATAATGCCAACAGTATTCCTGCATCAACAGTTGCCATGGTACAACAGCAACCACCGCATGTGGCGCAGATGTACCCACAAGTTCATGTTTCACATTATGCTAATCTTATGCCATATCGTCAGTTTATCTCACCAGTATACGTTCCACCAATGGCTGTGCCTGGCTATTCCAATAATCCTGCCTATCCTCACATGTCTAATGGCAACAGCTACTTGCTGATGCCTGGAGGTGGTTCCCACCTAAATGCAAACAGCCTCAAGTATGGAGTTCAGCAATTTAAGCCCGTCCCTGCTGGAAGTCCCACTGGGTTTGGAAATTTTACTAACCCAGCAGGTTATGCAATGAATGCCCCTGGTGTAGTTGGAGGTGCCACTGGACTCGAAGATTCATCAAGAATGAAGTACAAAGATGGCAATCTTTATGTTCCAAATCCACAGGCGGAGACATCAGAGATTTGGATTCAGAACCCAAGGGAGCATCCAGGAATGCAATCCACACCATACTACAACATGCCTGGGCAAACACCTCATGCTCCTTATATGCCGTCCCACGCCAGCCACGCTTCCTTTAATGCAGCTGCAGCACAATCTTCGCACATGCAATTCCCGGGAATGTACCATCCTCCTCAGCCTGCTGCAATGGCCAGTCCGCACCATATGGGCCCTGCTATGCCCGGCAATGTCGGAGTGGGGGTGGCCGCAGCTGCTCCTGGGGCACAGGCGTATCAGCAGCCCCAGTTGAATCATATGAACTGGACAACAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

707

Amino Acids

75.27

Weight (kDa)

6.63

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13990 AT3G13990
fragaria_vesca	FvH4_6g34480 FvH4_6g34480
malus_domestica	MD09G1185800.v1.1 MD17G1170400.v1.1
prunus_persica	Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1
pyrus_communis	pycom09g10310 pycom12419g00190
rosa_chinensis	RchiOBHm_Chr2g0144801
rosa_laevigata	RLG00000020114
rosa_multiflora	Rmu_sc0002354.1_g000026
rosa_roxburghii	Rroxscaffold_2G00100960
rosa_rugosa	Rorug02G0389700 Rorug02G0389800 Rorug02G0389900
rosa_samantha	Rh2AG441500 Rh2BG452100 Rh2CG428800 Rh2DG461900
rosa_wichuraiana	Rw2G036110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1676
AccB1I	GGYRCC	2 cut(s)	1087, 1721
AccI	GTMKAC	2 cut(s)	1324, 1491
AccII	CGCG	2 cut(s)	399, 1009
AciI	CCGC	6 cut(s)	953, 1314, 1409, 1793, 2003, 2052
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	4 cut(s)	332, 1081, 1217, 1250
AcoI	YGGCCR	2 cut(s)	1995, 2049
AcsI	RAATTY	4 cut(s)	94, 241, 1066, 1669
AcuI	CTGAAG	1 cut(s)	1188
AfaI	GTAC	7 cut(s)	37, 258, 456, 1395, 1427, 1757, 1970
AfiI	CCNNNNNNNGG	2 cut(s)	1265, 1583
AflIII	ACRYGT	1 cut(s)	1545
AgeI	ACCGGT	1 cut(s)	574
AgsI	TTSAA	8 cut(s)	66, 99, 145, 759, 915, 941, 964, 2095
AhdI	GACNNNNNGTC	1 cut(s)	1134
AjnI	CCWGG	7 cut(s)	706, 1513, 1576, 1705, 1834, 1867, 2062
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
Alw26I	GTCTC	6 cut(s)	203, 360, 769, 1121, 1173, 1790
AlwI	GGATC	4 cut(s)	332, 1081, 1217, 1250
AlwNI	CAGNNNCTG	2 cut(s)	341, 1103
Ama87I	CYCGRG	3 cut(s)	804, 1001, 1960
AoxI	GGCC	4 cut(s)	82, 1995, 2014, 2049
ApaI	GGGCCC	1 cut(s)	2018
ApeKI	GCWGC	9 cut(s)	779, 950, 1928, 1931, 1934, 1988, 2054, 2057, 2083
ApoI	RAATTY	4 cut(s)	94, 241, 1066, 1669
AsiGI	ACCGGT	1 cut(s)	574
AspLEI	GCGC	5 cut(s)	399, 619, 844, 1011, 1420
AspS9I	GGNCC	3 cut(s)	82, 2014, 2015
AsuC2I	CCSGG	3 cut(s)	1961, 1962, 2028
AsuHPI	GGTGA	2 cut(s)	18, 1476
AvaI	CYCGRG	3 cut(s)	804, 1001, 1960
AxyI	CCTNAGG	1 cut(s)	1335
BaeGI	GKGCMC	2 cut(s)	2018, 2071
BaeI	ACNNNNGTAYC	2 cut(s)	2060, 2093
BalI	TGGCCA	1 cut(s)	1997
BanI	GGYRCC	2 cut(s)	1087, 1721
BanII	GRGCYC	2 cut(s)	500, 2018
BbsI	GAAGAC	1 cut(s)	423
BbvCI	CCTCAGC	1 cut(s)	1980
BbvI	GCAGC	9 cut(s)	791, 937, 1918, 1940, 1946, 1975, 2044, 2066, 2095
BccI	CCATC	5 cut(s)	121, 379, 1336, 1757, 1980
BceAI	ACGGC	3 cut(s)	337, 1263, 1882
BcgI	CGANNNNNNTGC	4 cut(s)	571, 605, 1926, 1960
BciT130I	CCWGG	7 cut(s)	708, 1515, 1578, 1707, 1836, 1869, 2064
BclI	TGATCA	1 cut(s)	541
BcnI	CCSGG	3 cut(s)	1961, 1962, 2028
BcoDI	GTCTC	6 cut(s)	203, 360, 769, 1121, 1173, 1790
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	3 cut(s)	501, 1095, 1932
BfuAI	ACCTGC	1 cut(s)	1676
BglII	AGATCT	2 cut(s)	515, 584
BmeRI	GACNNNNNGTC	1 cut(s)	1134
BmeT110I	CYCGRG	3 cut(s)	804, 1001, 1960
BmgT120I	GGNCC	3 cut(s)	82, 2014, 2015
BmiI	GGNNCC	5 cut(s)	972, 1089, 1588, 1723, 2016
BmrI	ACTGGG	3 cut(s)	1287, 1668, 2083
BmsI	GCATC	5 cut(s)	305, 628, 1385, 1563, 1840
BmuI	ACTGGG	3 cut(s)	1287, 1668, 2083
BoxI	GACNNNNGTC	1 cut(s)	1185
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	3 cut(s)	729, 960, 1599
Bpu10I	CCTNAGC	2 cut(s)	1104, 1980
BpuEI	CTTGAG	2 cut(s)	1117, 1595
BpuMI	CCSGG	3 cut(s)	1961, 1962, 2028
BsaBI	GATNNNNATC	1 cut(s)	1767
BsaI	GGTCTC	2 cut(s)	769, 1121
BsaJI	CCNNGG	6 cut(s)	1389, 1705, 1823, 1868, 1960, 2063
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	4 cut(s)	982, 1012, 2031, 2061
Bsc4I	CCNNNNNNNGG	2 cut(s)	1265, 1583
Bse118I	RCCGGY	1 cut(s)	574
Bse21I	CCTNAGG	1 cut(s)	1335
Bse3DI	GCAATG	3 cut(s)	1701, 1998, 2038
Bse8I	GATNNNNATC	1 cut(s)	1767
BseBI	CCWGG	7 cut(s)	708, 1515, 1578, 1707, 1836, 1869, 2064
BseDI	CCNNGG	6 cut(s)	1389, 1705, 1823, 1868, 1960, 2063
BseGI	GGATG	5 cut(s)	10, 41, 1306, 1831, 1972
BseJI	GATNNNNATC	1 cut(s)	1767
BseLI	CCNNNNNNNGG	2 cut(s)	1265, 1583
BseMI	GCAATG	3 cut(s)	1701, 1998, 2038
BseRI	GAGGAG	4 cut(s)	732, 971, 1323, 1968
BseSI	GKGCMC	2 cut(s)	2018, 2071
BseXI	GCAGC	9 cut(s)	791, 937, 1918, 1940, 1946, 1975, 2044, 2066, 2095
BseYI	CCCAGC	2 cut(s)	651, 1681
Bsh1236I	CGCG	2 cut(s)	399, 1009
BshFI	GGCC	4 cut(s)	84, 1997, 2016, 2051
BshNI	GGYRCC	2 cut(s)	1087, 1721
BshTI	ACCGGT	1 cut(s)	574
BsiHKCI	CYCGRG	3 cut(s)	804, 1001, 1960
BsiSI	CCGG	5 cut(s)	575, 945, 1026, 1961, 2028
BslFI	GGGAC	5 cut(s)	842, 913, 1625, 1638, 1885
BslI	CCNNNNNNNGG	2 cut(s)	1265, 1583
BsmAI	GTCTC	6 cut(s)	203, 360, 769, 1121, 1173, 1790
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	5 cut(s)	842, 913, 1625, 1638, 1885
BsmI	GAATGC	3 cut(s)	127, 1705, 1845
BsnI	GGCC	4 cut(s)	84, 1997, 2016, 2051
Bso31I	GGTCTC	2 cut(s)	769, 1121
BsoBI	CYCGRG	3 cut(s)	804, 1001, 1960
Bsp120I	GGGCCC	1 cut(s)	2014
Bsp1286I	GDGCHC	3 cut(s)	500, 2018, 2071
Bsp143I	GATC	7 cut(s)	337, 515, 541, 584, 1073, 1222, 1255
Bsp19I	CCATGG	1 cut(s)	1389
BspACI	CCGC	6 cut(s)	953, 1314, 1409, 1793, 2003, 2052
BspANI	GGCC	4 cut(s)	84, 1997, 2016, 2051
BspFNI	CGCG	2 cut(s)	399, 1009
BspLI	GGNNCC	5 cut(s)	972, 1089, 1588, 1723, 2016
BspMAI	CTGCAG	3 cut(s)	505, 1099, 1936
BspMI	ACCTGC	1 cut(s)	1676
BspPI	GGATC	4 cut(s)	332, 1081, 1217, 1250
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	2 cut(s)	1087, 1721
BspTNI	GGTCTC	2 cut(s)	769, 1121
BsrDI	GCAATG	3 cut(s)	1701, 1998, 2038
BsrFI	RCCGGY	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	6 cut(s)	1389, 1705, 1823, 1868, 1960, 2063
BssMI	GATC	7 cut(s)	337, 515, 541, 584, 1073, 1222, 1255
BssNAI	GTATAC	1 cut(s)	1492
BssT1I	CCWWGG	2 cut(s)	1389, 1823
Bst1107I	GTATAC	1 cut(s)	1492
Bst2UI	CCWGG	7 cut(s)	708, 1515, 1578, 1707, 1836, 1869, 2064
Bst4CI	ACNGT	9 cut(s)	429, 608, 827, 872, 928, 1092, 1187, 1367, 1384
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	3 cut(s)	1094, 1691, 1700
BstC8I	GCNNGC	4 cut(s)	21, 801, 1909, 1986
BstDSI	CCRYGG	1 cut(s)	1389
BstF5I	GGATG	5 cut(s)	10, 41, 1306, 1831, 1972
BstFNI	CGCG	2 cut(s)	399, 1009
BstHHI	GCGC	5 cut(s)	399, 619, 844, 1011, 1420
BstKTI	GATC	7 cut(s)	340, 518, 544, 587, 1076, 1225, 1258
BstMAI	GTCTC	6 cut(s)	203, 360, 769, 1121, 1173, 1790
BstMBI	GATC	7 cut(s)	337, 515, 541, 584, 1073, 1222, 1255
BstNI	CCWGG	7 cut(s)	708, 1515, 1578, 1707, 1836, 1869, 2064
BstNSI	RCATGY	4 cut(s)	1415, 1549, 1867, 1954
BstPAI	GACNNNNGTC	1 cut(s)	1185
BstSFI	CTRYAG	3 cut(s)	501, 1095, 1932
BstSLI	GKGCMC	2 cut(s)	2018, 2071
BstUI	CGCG	2 cut(s)	399, 1009
BstV1I	GCAGC	9 cut(s)	791, 937, 1918, 1940, 1946, 1975, 2044, 2066, 2095
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	5 cut(s)	337, 515, 584, 1073, 1222
BstYI	RGATCY	5 cut(s)	337, 515, 584, 1073, 1222
BstZ17I	GTATAC	1 cut(s)	1492
Bsu36I	CCTNAGG	1 cut(s)	1335
BsuRI	GGCC	4 cut(s)	84, 1997, 2016, 2051
BtgI	CCRYGG	1 cut(s)	1389
BtsCI	GGATG	5 cut(s)	10, 41, 1306, 1831, 1972
BtsI	GCAGTG	2 cut(s)	1018, 1104
BtsIMutI	CAGTG	6 cut(s)	522, 613, 1018, 1104, 1656, 1725
BveI	ACCTGC	1 cut(s)	1676
Cac8I	GCNNGC	4 cut(s)	21, 801, 1909, 1986
CaiI	CAGNNNCTG	2 cut(s)	341, 1103
CfoI	GCGC	5 cut(s)	399, 619, 844, 1011, 1420
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	3 cut(s)	82, 2014, 2015
Cfr9I	CCCGGG	1 cut(s)	1960
Csp6I	GTAC	7 cut(s)	36, 257, 455, 1394, 1426, 1756, 1969
CspAI	ACCGGT	1 cut(s)	574
CspCI	CAANNNNNGTGG	2 cut(s)	1645, 1680
CviAII	CATG	8 cut(s)	347, 1390, 1412, 1439, 1546, 1864, 1883, 1951
CviQI	GTAC	7 cut(s)	36, 257, 455, 1394, 1426, 1756, 1969
DpnI	GATC	7 cut(s)	339, 517, 543, 586, 1075, 1224, 1257
DpnII	GATC	7 cut(s)	337, 515, 541, 584, 1073, 1222, 1255
DriI	GACNNNNNGTC	1 cut(s)	1134
EaeI	YGGCCR	2 cut(s)	1995, 2049
Eam1104I	CTCTTC	1 cut(s)	240
Eam1105I	GACNNNNNGTC	1 cut(s)	1134
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	1808
Eco130I	CCWWGG	2 cut(s)	1389, 1823
Eco24I	GRGCYC	2 cut(s)	500, 2018
Eco31I	GGTCTC	2 cut(s)	769, 1121
Eco57I	CTGAAG	1 cut(s)	1188
Eco81I	CCTNAGG	1 cut(s)	1335
Eco88I	CYCGRG	3 cut(s)	804, 1001, 1960
EcoO109I	RGGNCCY	1 cut(s)	2015
EcoRII	CCWGG	7 cut(s)	706, 1513, 1576, 1705, 1834, 1867, 2062
EcoT14I	CCWWGG	2 cut(s)	1389, 1823
EcoT38I	GRGCYC	2 cut(s)	500, 2018
ErhI	CCWWGG	2 cut(s)	1389, 1823
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	8 cut(s)	350, 1393, 1415, 1442, 1549, 1867, 1886, 1954
FalI	AAGNNNNNCTT	4 cut(s)	451, 483, 783, 815
FaqI	GGGAC	5 cut(s)	842, 913, 1625, 1638, 1885
FatI	CATG	8 cut(s)	346, 1389, 1411, 1438, 1545, 1863, 1882, 1950
FauNDI	CATATG	2 cut(s)	2010, 2100
FbaI	TGATCA	1 cut(s)	541
FblI	GTMKAC	2 cut(s)	1324, 1491
FokI	GGATG	5 cut(s)	17, 28, 1313, 1818, 1959
FriOI	GRGCYC	2 cut(s)	500, 2018
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	5 cut(s)	398, 618, 843, 1010, 1419
GsaI	CCCAGC	2 cut(s)	655, 1685
GsuI	CTGGAG	3 cut(s)	729, 960, 1599
HaeIII	GGCC	4 cut(s)	84, 1997, 2016, 2051
HapII	CCGG	5 cut(s)	575, 945, 1026, 1961, 2028
HhaI	GCGC	5 cut(s)	399, 619, 844, 1011, 1420
Hin1II	CATG	8 cut(s)	350, 1393, 1415, 1442, 1549, 1867, 1886, 1954
Hin6I	GCGC	5 cut(s)	397, 617, 842, 1009, 1418
HinP1I	GCGC	5 cut(s)	397, 617, 842, 1009, 1418
HincII	GTYRAC	1 cut(s)	990
HindII	GTYRAC	1 cut(s)	990
HindIII	AAGCTT	3 cut(s)	645, 797, 892
HpaII	CCGG	5 cut(s)	575, 945, 1026, 1961, 2028
HphI	GGTGA	2 cut(s)	18, 1476
Hpy166II	GTNNAC	5 cut(s)	333, 990, 1325, 1352, 1492
Hpy188III	TCNNGA	8 cut(s)	162, 359, 366, 1001, 1071, 1178, 1337, 1746
Hpy8I	GTNNAC	5 cut(s)	333, 990, 1325, 1352, 1492
HpyAV	CCTTC	2 cut(s)	73, 1212
HpyCH4III	ACNGT	9 cut(s)	429, 608, 827, 872, 928, 1092, 1187, 1367, 1384
HpyCH4IV	ACGT	2 cut(s)	177, 1494
HpySE526I	ACGT	2 cut(s)	177, 1494
Hsp92II	CATG	8 cut(s)	350, 1393, 1415, 1442, 1549, 1867, 1886, 1954
HspAI	GCGC	5 cut(s)	397, 617, 842, 1009, 1418
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	7 cut(s)	337, 515, 541, 584, 1073, 1222, 1255
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	5 cut(s)	947, 1003, 1828, 1891, 2065
Lsp1109I	GCAGC	9 cut(s)	791, 937, 1918, 1940, 1946, 1975, 2044, 2066, 2095
LweI	GCATC	5 cut(s)	305, 628, 1385, 1563, 1840
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	177, 1494
MaeIII	GTNAC	2 cut(s)	866, 1233
MalI	GATC	7 cut(s)	339, 517, 543, 586, 1075, 1224, 1257
MboI	GATC	7 cut(s)	337, 515, 541, 584, 1073, 1222, 1255
MboII	GAAGA	4 cut(s)	227, 423, 1748, 1935
MflI	RGATCY	5 cut(s)	337, 515, 584, 1073, 1222
MhlI	GDGCHC	3 cut(s)	500, 2018, 2071
MlsI	TGGCCA	1 cut(s)	1997
MluNI	TGGCCA	1 cut(s)	1997
MlyI	GAGTC	5 cut(s)	720, 779, 864, 1013, 1725
MmeI	TCCRAC	4 cut(s)	394, 665, 1696, 2017
Mox20I	TGGCCA	1 cut(s)	1997
MscI	TGGCCA	1 cut(s)	1997
MseI	TTAA	5 cut(s)	15, 393, 930, 1632, 1923
MslI	CAYNNNNRTG	2 cut(s)	31, 1596
Msp20I	TGGCCA	1 cut(s)	1997
MspA1I	CMGCKG	3 cut(s)	452, 1931, 2057
MspI	CCGG	5 cut(s)	575, 945, 1026, 1961, 2028
Mva1269I	GAATGC	3 cut(s)	127, 1705, 1845
MvaI	CCWGG	7 cut(s)	708, 1515, 1578, 1707, 1836, 1869, 2064
MvnI	CGCG	2 cut(s)	399, 1009
NciI	CCSGG	3 cut(s)	1961, 1962, 2028
NcoI	CCATGG	1 cut(s)	1389
NdeI	CATATG	2 cut(s)	2010, 2100
NdeII	GATC	7 cut(s)	337, 515, 541, 584, 1073, 1222, 1255
NlaIII	CATG	8 cut(s)	350, 1393, 1415, 1442, 1549, 1867, 1886, 1954
NlaIV	GGNNCC	5 cut(s)	972, 1089, 1588, 1723, 2016
NmuCI	GTSAC	1 cut(s)	866
NspI	RCATGY	4 cut(s)	1415, 1549, 1867, 1954
PciI	ACATGT	1 cut(s)	1545
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	3 cut(s)	127, 1705, 1845
PflFI	GACNNNGTC	1 cut(s)	1320
PfoI	TCCNGGA	2 cut(s)	706, 1834
PinAI	ACCGGT	1 cut(s)	574
PleI	GAGTC	5 cut(s)	719, 778, 863, 1012, 1725
PpsI	GAGTC	5 cut(s)	719, 778, 863, 1012, 1725
PscI	ACATGT	1 cut(s)	1545
PshAI	GACNNNNGTC	1 cut(s)	1185
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	7 cut(s)	706, 1513, 1576, 1705, 1834, 1867, 2062
PspFI	CCCAGC	2 cut(s)	651, 1681
PspGI	CCWGG	7 cut(s)	706, 1513, 1576, 1705, 1834, 1867, 2062
PspN4I	GGNNCC	5 cut(s)	972, 1089, 1588, 1723, 2016
PspOMI	GGGCCC	1 cut(s)	2014
PspPI	GGNCC	3 cut(s)	82, 2014, 2015
PstI	CTGCAG	3 cut(s)	505, 1099, 1936
PstNI	CAGNNNCTG	2 cut(s)	341, 1103
PsuI	RGATCY	5 cut(s)	337, 515, 584, 1073, 1222
PsyI	GACNNNGTC	1 cut(s)	1320
PvuII	CAGCTG	3 cut(s)	452, 1931, 2057
RsaI	GTAC	7 cut(s)	37, 258, 456, 1395, 1427, 1757, 1970
RsaNI	GTAC	7 cut(s)	36, 257, 455, 1394, 1426, 1756, 1969
RseI	CAYNNNNRTG	2 cut(s)	31, 1596
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	5 cut(s)	15, 393, 930, 1632, 1923
Sau3AI	GATC	7 cut(s)	337, 515, 541, 584, 1073, 1222, 1255
Sau96I	GGNCC	3 cut(s)	82, 2014, 2015
SchI	GAGTC	5 cut(s)	720, 779, 864, 1013, 1725
SduI	GDGCHC	3 cut(s)	500, 2018, 2071
SfaNI	GCATC	5 cut(s)	305, 628, 1385, 1563, 1840
SfcI	CTRYAG	3 cut(s)	501, 1095, 1932
SmaI	CCCGGG	1 cut(s)	1962
SmiMI	CAYNNNNRTG	2 cut(s)	31, 1596
SmlI	CTYRAG	2 cut(s)	1132, 1610
SmoI	CTYRAG	2 cut(s)	1132, 1610
SsiI	CCGC	6 cut(s)	953, 1314, 1409, 1793, 2003, 2052
SspI	AATATT	1 cut(s)	850
SspMI	CTAG	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	1389, 1823
TaaI	ACNGT	9 cut(s)	429, 608, 827, 872, 928, 1092, 1187, 1367, 1384
TaiI	ACGT	2 cut(s)	180, 1497
TaqI	TCGA	3 cut(s)	163, 1177, 1734
TatI	WGTACW	2 cut(s)	35, 1755
TauI	GCSGC	1 cut(s)	2054
Tru1I	TTAA	5 cut(s)	15, 393, 930, 1632, 1923
Tru9I	TTAA	5 cut(s)	15, 393, 930, 1632, 1923
TscAI	CASTG	6 cut(s)	529, 613, 1018, 1104, 1663, 1732
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	9 cut(s)	779, 950, 1928, 1931, 1934, 1988, 2054, 2057, 2083
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	8 cut(s)	177, 335, 1317, 1427, 1712, 1731, 1766, 2117
TspGWI	ACGGA	1 cut(s)	1179
TspMI	CCCGGG	1 cut(s)	1960
TspRI	CASTG	6 cut(s)	529, 613, 1018, 1104, 1663, 1732
Tth111I	GACNNNGTC	1 cut(s)	1320
XapI	RAATTY	4 cut(s)	94, 241, 1066, 1669
XbaI	TCTAGA	1 cut(s)	365
XceI	RCATGY	4 cut(s)	1415, 1549, 1867, 1954
XmaI	CCCGGG	1 cut(s)	1960
XmiI	GTMKAC	2 cut(s)	1324, 1491
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.