Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005772

Physical Location & Seq

Genomic Coordinates Reverse (-)

49842159 .. 49844506

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0389900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTATCTTCTTTCACACCAACCTAGTCTCATACCAAAGATCATGGAAAGTCTCGCTCCTACTCATCTTCTTCTTCTTCTCTTTACTCTCTTCACCTTCATTGCCACAATCAGTTGTACAGAGTCGATATCAAATCCAATACAAGACGATATACACGATATTGTTTGTTCAGTTCCAGGGGTAAACTGTGCGCAAGGAAAATGCAAGTATTCTAATGACTCAAGTCACTCAATAGATGTGCCTGGTCTCGGACGTGTGGGTTTTGACTGCGACTGTAACCCTGGTTGGAAAAAGATTCAGATCGGCCCCTTTACCTATCCATCTTGTCTCATTCCAGACTGCACTGTTAATGTTGGATGTGATTTATCTCCCCCACAACCTCCTCCTTTCCCTCCGCCACTGGTAATACCACAATGTGCACTTGTTTGGTGTGGTGACGGAACCTGCATAGCCAACGGGACTAGTGGATACATATGCCAATGCAATGAAGGCACATTGAACATGTTGGATAATCCACAGTTAGCATGCTTGAAAACATGCGCTTTTGGAGGAGACTGCAAGAAGCTTGGCTTCCCATCCGATGCCAAATCAAATGCTCCAAGCTCTCAAACAATTGGTAAGTCGTTTCGGCGTAAAAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

214

Amino Acids

22.99

Weight (kDa)

6.38

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13990 AT3G13990
fragaria_vesca	FvH4_6g34480 FvH4_6g34480
malus_domestica	MD09G1185800.v1.1 MD17G1170400.v1.1
prunus_persica	Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1
pyrus_communis	pycom09g10310 pycom12419g00190
rosa_chinensis	RchiOBHm_Chr2g0144801
rosa_laevigata	RLG00000020114
rosa_multiflora	Rmu_sc0002354.1_g000026
rosa_roxburghii	Rroxscaffold_2G00100960
rosa_rugosa	Rorug02G0389700 Rorug02G0389800 Rorug02G0389900
rosa_samantha	Rh2AG441500 Rh2BG452100 Rh2CG428800 Rh2DG461900
rosa_wichuraiana	Rw2G036110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	452
AciI	CCGC	1 cut(s)	395
AdeI	CACNNNGTG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	2 cut(s)	253, 501
AgsI	TTSAA	2 cut(s)	499, 532
AhlI	ACTAGT	1 cut(s)	461
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	3 cut(s)	175, 241, 280
AluBI	AGCT	2 cut(s)	565, 603
AluI	AGCT	2 cut(s)	565, 603
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	5 cut(s)	32, 56, 251, 332, 546
Alw44I	GTGCAC	1 cut(s)	417
AoxI	GGCC	1 cut(s)	304
ApaLI	GTGCAC	1 cut(s)	417
AspLEI	GCGC	2 cut(s)	193, 542
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	85, 446
BaeGI	GKGCMC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	421
BccI	CCATC	2 cut(s)	328, 583
BciT130I	CCWGG	3 cut(s)	177, 243, 282
BciVI	GTATCC	1 cut(s)	461
BcoDI	GTCTC	5 cut(s)	32, 56, 251, 332, 546
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	2 cut(s)	24, 462
BfuAI	ACCTGC	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	461
Bme1390I	CCNGG	3 cut(s)	177, 243, 282
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	2 cut(s)	307, 442
BmrFI	CCNGG	3 cut(s)	177, 243, 282
BmsI	GCATC	1 cut(s)	571
BoxI	GACNNNNGTC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	205
BsaBI	GATNNNNATC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	176, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	2 cut(s)	99, 490
Bse8I	GATNNNNATC	1 cut(s)	299
BseBI	CCWGG	3 cut(s)	177, 243, 282
BseDI	CCNNGG	2 cut(s)	176, 280
BseGI	GGATG	2 cut(s)	362, 575
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	2 cut(s)	99, 490
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	372, 564
BseSI	GKGCMC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	5 cut(s)	32, 56, 251, 332, 546
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	306
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	39, 300
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	307, 442
BspMI	ACCTGC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	99, 490
BsrGI	TGTACA	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	176, 280
BssMI	GATC	2 cut(s)	39, 300
Bst2UI	CCWGG	3 cut(s)	177, 243, 282
Bst4CI	ACNGT	4 cut(s)	188, 275, 346, 519
Bst6I	CTCTTC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	362, 575
BstHHI	GCGC	2 cut(s)	193, 542
BstKTI	GATC	2 cut(s)	42, 303
BstMAI	GTCTC	5 cut(s)	32, 56, 251, 332, 546
BstMBI	GATC	2 cut(s)	39, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	3 cut(s)	177, 243, 282
BstNSI	RCATGY	3 cut(s)	505, 528, 540
BstPAI	GACNNNNGTC	1 cut(s)	222
BstSCI	CCNGG	3 cut(s)	175, 241, 280
BstSLI	GKGCMC	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	362, 575
BtsIMutI	CAGTG	2 cut(s)	342, 398
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	2 cut(s)	193, 542
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	4 cut(s)	43, 502, 525, 537
CviJI	RGCY	5 cut(s)	306, 452, 565, 570, 603
CviKI_1	RGCY	5 cut(s)	306, 452, 565, 570, 603
CviQI	GTAC	1 cut(s)	117
DpnI	GATC	2 cut(s)	41, 302
DpnII	GATC	2 cut(s)	39, 300
DraIII	CACNNNGTG	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	129
EcoRII	CCWGG	3 cut(s)	175, 241, 280
EcoRV	GATATC	1 cut(s)	129
FaeI	CATG	4 cut(s)	46, 505, 528, 540
FaiI	YATR	9 cut(s)	32, 44, 152, 449, 473, 475, 503, 526, 538
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	42, 501, 524, 536
FauNDI	CATATG	1 cut(s)	473
FokI	GGATG	2 cut(s)	369, 562
FspBI	CTAG	2 cut(s)	24, 462
FspI	TGCGCA	1 cut(s)	192
GlaI	GCGC	2 cut(s)	192, 541
HaeIII	GGCC	1 cut(s)	306
HhaI	GCGC	2 cut(s)	193, 542
Hin1II	CATG	4 cut(s)	46, 505, 528, 540
Hin6I	GCGC	2 cut(s)	191, 540
HinP1I	GCGC	2 cut(s)	191, 540
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	3 cut(s)	122, 218, 295
HphI	GGTGA	2 cut(s)	85, 446
Hpy166II	GTNNAC	2 cut(s)	184, 419
Hpy188I	TCNGA	3 cut(s)	251, 300, 580
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	184, 419
HpyAV	CCTTC	2 cut(s)	106, 482
HpyCH4III	ACNGT	4 cut(s)	188, 275, 346, 519
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	6 cut(s)	204, 342, 419, 447, 483, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	4 cut(s)	46, 505, 528, 540
HspAI	GCGC	2 cut(s)	191, 540
Kzo9I	GATC	2 cut(s)	39, 300
LmnI	GCTCC	2 cut(s)	61, 601
LpnPI	CCDG	9 cut(s)	162, 189, 228, 255, 267, 294, 348, 386, 457
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	2 cut(s)	24, 462
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	3 cut(s)	224, 275, 434
MalI	GATC	2 cut(s)	41, 302
MboI	GATC	2 cut(s)	39, 300
MboII	GAAGA	5 cut(s)	59, 62, 65, 68, 82
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	131, 212
MmeI	TCCRAC	3 cut(s)	266, 334, 486
MnlI	CCTC	4 cut(s)	390, 393, 402, 542
MseI	TTAA	2 cut(s)	348, 643
MspR9I	CCNGG	3 cut(s)	177, 243, 282
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	3 cut(s)	177, 243, 282
MwoI	GCNNNNNNNGC	1 cut(s)	489
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	2 cut(s)	39, 300
NlaIII	CATG	4 cut(s)	46, 505, 528, 540
NlaIV	GGNNCC	2 cut(s)	307, 442
NmuCI	GTSAC	2 cut(s)	224, 434
NsbI	TGCGCA	1 cut(s)	192
NspI	RCATGY	3 cut(s)	505, 528, 540
PaeI	GCATGC	1 cut(s)	528
PciI	ACATGT	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	130, 212
PpsI	GAGTC	2 cut(s)	130, 212
PscI	ACATGT	1 cut(s)	501
PshAI	GACNNNNGTC	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	175, 241, 280
PspGI	CCWGG	3 cut(s)	175, 241, 280
PspN4I	GGNNCC	2 cut(s)	307, 442
PspPI	GGNCC	1 cut(s)	305
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	348, 643
Sau3AI	GATC	2 cut(s)	39, 300
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	2 cut(s)	131, 212
ScrFI	CCNGG	3 cut(s)	177, 243, 282
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	8 cut(s)	25, 98, 256, 317, 382, 446, 567, 605
SfaNI	GCATC	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SpeI	ACTAGT	1 cut(s)	461
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	1 cut(s)	612
SsiI	CCGC	1 cut(s)	395
SspI	AATATT	1 cut(s)	641
SspMI	CTAG	2 cut(s)	24, 462
StyD4I	CCNGG	3 cut(s)	175, 241, 280
TaaI	ACNGT	4 cut(s)	188, 275, 346, 519
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	612
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	348, 643
Tru9I	TTAA	2 cut(s)	348, 643
TscAI	CASTG	2 cut(s)	349, 405
TseFI	GTSAC	2 cut(s)	224, 434
Tsp45I	GTSAC	2 cut(s)	224, 434
TspDTI	ATGAA	2 cut(s)	88, 501
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	2 cut(s)	349, 405
VneI	GTGCAC	1 cut(s)	417
XceI	RCATGY	3 cut(s)	505, 528, 540
XspI	CTAG	2 cut(s)	24, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.