Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005772

Physical Location & Seq

Genomic Coordinates Reverse (-)

49813570 .. 49814124

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0389800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGCTTGCACGCGCCTGAGAAAACAGAGAGTGCGTTAGTTCCCTGTCTGGCGGCGAGTCCTTGTGCCGCTGTTGGATGGGCCTTTGTCGACCCCGTGTGGGTCTACTGTGAGACTGGCTCCTTGATAGATCGGTTTGAGGAGTTCGCGGTGGCTTTAGGTGAGGTAGGGGAGAGGAAGATTGCGATGGTTGGCTGGGCTTCATTCGCTACTTGCCGGCTTGGCCGGCGGGGTGGTGTGCTATTGCAGATTCAGAGGTGGCCTGATGGGGACGAGGTTGGGGCGGTATGGCTTTGCTCAGATTGGATTTCTCTGATCTGGGTTGGGTCGTTTGCTTACGATCTAGGTACGGGTCCACGAGCTGCTGCCTCCTCAAGGAGTGATGTCGCTAGCAGAAGGTTGATGGCTGCGATCTGGCCGAAGTGGTGTGGTGGCGCAATGGGGGGCTCGTCAGCGGTGGCTGCAGGGTTGGGCCGAGTTTGGCTGGTTGCACGTGATCTTCATGTCCCTAAGGTTGTGGCTTGGGTTTGGGCCCTCTTTTTGGGCCCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

184

Amino Acids

19.76

Weight (kDa)

7.6

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13990 AT3G13990
fragaria_vesca	FvH4_6g34480 FvH4_6g34480
malus_domestica	MD09G1185800.v1.1 MD17G1170400.v1.1
prunus_persica	Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1 Prupe.3G043500_v2.0.a1
pyrus_communis	pycom09g10310 pycom12419g00190
rosa_chinensis	RchiOBHm_Chr2g0144801
rosa_laevigata	RLG00000020114
rosa_multiflora	Rmu_sc0002354.1_g000026
rosa_roxburghii	Rroxscaffold_2G00100960
rosa_rugosa	Rorug02G0389700 Rorug02G0389800 Rorug02G0389900
rosa_samantha	Rh2AG441500 Rh2BG452100 Rh2CG428800 Rh2DG461900
rosa_wichuraiana	Rw2G036110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 105
AccII	CGCG	2 cut(s)	14, 149
AciI	CCGC	6 cut(s)	53, 69, 149, 229, 284, 455
AcoI	YGGCCR	2 cut(s)	223, 416
AcvI	CACGTG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	100, 375, 541
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	7 cut(s)	81, 223, 260, 416, 472, 531, 544
ApaI	GGGCCC	2 cut(s)	535, 548
ApeKI	GCWGC	4 cut(s)	362, 365, 407, 461
AspLEI	GCGC	3 cut(s)	6, 16, 437
AspS9I	GGNCC	7 cut(s)	81, 353, 472, 531, 532, 544, 545
AsuHPI	GGTGA	1 cut(s)	173
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	535, 548
BanII	GRGCYC	3 cut(s)	449, 535, 548
BauI	CACGAG	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	494
BbvI	GCAGC	4 cut(s)	349, 352, 394, 448
BccI	CCATC	4 cut(s)	72, 181, 260, 397
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	344, 390
BfmI	CTRYAG	1 cut(s)	462
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	6 cut(s)	54, 69, 363, 366, 408, 462
BlsI	GCNGC	6 cut(s)	55, 70, 364, 367, 409, 463
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	7 cut(s)	81, 353, 472, 531, 532, 544, 545
BmiI	GGNNCC	4 cut(s)	121, 354, 533, 546
BmtI	GCTAGC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpuEI	CTTGAG	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 375, 541
Bse118I	RCCGGY	2 cut(s)	216, 225
Bse1I	ACTGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	100, 375, 541
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	9, 312
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	155, 361
BseSI	GKGCMC	2 cut(s)	535, 548
BseXI	GCAGC	4 cut(s)	349, 352, 394, 448
BseYI	CCCAGC	1 cut(s)	195
Bsh1236I	CGCG	2 cut(s)	14, 149
BshFI	GGCC	7 cut(s)	83, 225, 262, 418, 474, 533, 546
BsiSI	CCGG	2 cut(s)	217, 226
BslFI	GGGAC	2 cut(s)	284, 491
BslI	CCNNNNNNNGG	3 cut(s)	100, 375, 541
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	284, 491
BsnI	GGCC	7 cut(s)	83, 225, 262, 418, 474, 533, 546
Bsp120I	GGGCCC	2 cut(s)	531, 544
Bsp1286I	GDGCHC	3 cut(s)	449, 535, 548
Bsp143I	GATC	5 cut(s)	130, 315, 340, 411, 496
BspACI	CCGC	6 cut(s)	53, 69, 149, 229, 284, 455
BspANI	GGCC	7 cut(s)	83, 225, 262, 418, 474, 533, 546
BspCNI	CTCAG	2 cut(s)	10, 311
BspFNI	CGCG	2 cut(s)	14, 149
BspLI	GGNNCC	4 cut(s)	121, 354, 533, 546
BspMAI	CTGCAG	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	2 cut(s)	216, 225
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	2 cut(s)	216, 225
BssMI	GATC	5 cut(s)	130, 315, 340, 411, 496
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	494
BstC8I	GCNNGC	5 cut(s)	8, 12, 218, 227, 391
BstDEI	CTNAG	3 cut(s)	18, 298, 510
BstENI	CCTNNNNNAGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	2 cut(s)	14, 149
BstHHI	GCGC	3 cut(s)	6, 16, 437
BstKTI	GATC	5 cut(s)	133, 318, 343, 414, 499
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	5 cut(s)	130, 315, 340, 411, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 222, 226, 461
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	2 cut(s)	535, 548
BstUI	CGCG	2 cut(s)	14, 149
BstV1I	GCAGC	4 cut(s)	349, 352, 394, 448
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	7 cut(s)	83, 225, 262, 418, 474, 533, 546
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	83
Cac8I	GCNNGC	5 cut(s)	8, 12, 218, 227, 391
CfoI	GCGC	3 cut(s)	6, 16, 437
Cfr10I	RCCGGY	2 cut(s)	216, 225
Cfr13I	GGNCC	7 cut(s)	81, 353, 472, 531, 532, 544, 545
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	1 cut(s)	503
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	3 cut(s)	18, 298, 510
DpnI	GATC	5 cut(s)	132, 317, 342, 413, 498
DpnII	GATC	5 cut(s)	130, 315, 340, 411, 496
EaeI	YGGCCR	2 cut(s)	223, 416
Eco24I	GRGCYC	3 cut(s)	449, 535, 548
Eco47I	GGWCC	1 cut(s)	353
Eco72I	CACGTG	1 cut(s)	494
Eco81I	CCTNAGG	1 cut(s)	510
EcoNI	CCTNNNNNAGG	1 cut(s)	373
EcoO109I	RGGNCCY	2 cut(s)	532, 545
EcoT38I	GRGCYC	3 cut(s)	449, 535, 548
FaeI	CATG	1 cut(s)	506
FaiI	YATR	2 cut(s)	289, 504
FaqI	GGGAC	2 cut(s)	284, 491
FatI	CATG	1 cut(s)	502
FauI	CCCGC	1 cut(s)	222
FblI	GTMKAC	2 cut(s)	90, 105
Fnu4HI	GCNGC	6 cut(s)	54, 69, 363, 366, 408, 462
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	3 cut(s)	449, 535, 548
Fsp4HI	GCNGC	6 cut(s)	54, 69, 363, 366, 408, 462
FspBI	CTAG	2 cut(s)	344, 390
GlaI	GCGC	3 cut(s)	5, 15, 436
GluI	GCNGC	6 cut(s)	54, 69, 363, 366, 408, 462
GsaI	CCCAGC	1 cut(s)	199
HaeIII	GGCC	7 cut(s)	83, 225, 262, 418, 474, 533, 546
HapII	CCGG	2 cut(s)	217, 226
HhaI	GCGC	3 cut(s)	6, 16, 437
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	3 cut(s)	4, 14, 435
HinP1I	GCGC	3 cut(s)	4, 14, 435
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	58, 250
HpaII	CCGG	2 cut(s)	217, 226
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	3 cut(s)	91, 106, 356
Hpy188I	TCNGA	3 cut(s)	255, 301, 315
Hpy8I	GTNNAC	3 cut(s)	91, 106, 356
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	4 cut(s)	10, 247, 464, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 222, 226, 461
HpyF3I	CTNAG	3 cut(s)	18, 298, 510
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	3 cut(s)	4, 14, 435
KroI	GCCGGC	2 cut(s)	216, 225
KroNI	GCCGGC	2 cut(s)	218, 227
Kzo9I	GATC	5 cut(s)	130, 315, 340, 411, 496
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	4 cut(s)	349, 352, 394, 448
MaeI	CTAG	2 cut(s)	344, 390
MaeII	ACGT	1 cut(s)	493
MalI	GATC	5 cut(s)	132, 317, 342, 413, 498
MboI	GATC	5 cut(s)	130, 315, 340, 411, 496
MboII	GAAGA	2 cut(s)	190, 491
MhlI	GDGCHC	3 cut(s)	449, 535, 548
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	133, 157, 168, 249, 268, 379, 382, 545
MroNI	GCCGGC	2 cut(s)	216, 225
MspA1I	CMGCKG	2 cut(s)	71, 455
MspI	CCGG	2 cut(s)	217, 226
MvnI	CGCG	2 cut(s)	14, 149
MwoI	GCNNNNNNNGC	4 cut(s)	206, 222, 226, 461
NaeI	GCCGGC	2 cut(s)	218, 227
NdeII	GATC	5 cut(s)	130, 315, 340, 411, 496
NgoMIV	GCCGGC	2 cut(s)	216, 225
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	4 cut(s)	121, 354, 533, 546
NmeAIII	GCCGAG	1 cut(s)	500
PdiI	GCCGGC	2 cut(s)	218, 227
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	6 cut(s)	55, 70, 364, 367, 409, 463
PleI	GAGTC	1 cut(s)	66
PmaCI	CACGTG	1 cut(s)	494
PmlI	CACGTG	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	494
PspCI	CACGTG	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	195
PspN4I	GGNNCC	4 cut(s)	121, 354, 533, 546
PspOMI	GGGCCC	2 cut(s)	531, 544
PspPI	GGNCC	7 cut(s)	81, 353, 472, 531, 532, 544, 545
PstI	CTGCAG	1 cut(s)	466
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	89
SatI	GCNGC	6 cut(s)	54, 69, 363, 366, 408, 462
Sau3AI	GATC	5 cut(s)	130, 315, 340, 411, 496
Sau96I	GGNCC	7 cut(s)	81, 353, 472, 531, 532, 544, 545
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	3 cut(s)	449, 535, 548
SetI	ASST	9 cut(s)	163, 168, 260, 279, 349, 364, 401, 496, 516
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
SsiI	CCGC	6 cut(s)	53, 69, 149, 229, 284, 455
SspMI	CTAG	2 cut(s)	344, 390
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	90
TauI	GCSGC	2 cut(s)	56, 71
TfiI	GAWTC	1 cut(s)	250
TseI	GCWGC	4 cut(s)	362, 365, 407, 461
TspDTI	ATGAA	2 cut(s)	192, 491
VpaK11BI	GGWCC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	90, 105
XspI	CTAG	2 cut(s)	344, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.