Rroxscaffold_2G00123200

Belongs to the PI3 PI4-kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
56944312 .. 56959123
14812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123200.1

Sequence Viewer

Length: 3378 bp
ATGGTAAGGATACTGGGACTGACTCGGGGTGAGACGGACGAGTCGCCGCGGGAGATCACCTCGCGGACCAACATATCCAGTGATTCCGGCGAGAATGGGTGGCTGATTCGCTTCTTCGACTCGGCGTTCTTCTGCGAGTGGATCGCCGTGAGCTACCTGTACAAGCATGAACACTCCGGGGTTCGAGACTATCTCTGTAATCGAATGTACACTCTGCCATTGCCAGGTATTGAGAGCTATTTGTTTCAGATATGTTATATGTCAGTACACAAACCCAGCCCCTCTTTGGATAAGTTTGTCATTGATATGTGCTCTAAGTCACTTAAGATGGCTCTCAAGGTGCATTGGTTTTTGCTGGCTGAGCTCGAAGATTCCGATGACAATGAAGGGATTAGTAGGATACAGGAGAAGTGTCAGATTGCTGCTACTTTGATGGGCGAGTGGGCGCCGCTGGTTCGGCCTCAGAGTGAGTCTAGTAGCCCCGGGAGTAAGAACCAGGTGTTGAATAGACTGTTTTCATCTAAGCAGAAACTGTTGTCATTGACGTCTTCGCCGCCTGCTCAGAGGTCCTTTTCATTCTCGCCTTCATCGGGAAACAGTCTGCCAGAGGATGGTGGAGGGCAGTTGTCTCCTGATGAGAATAAGATTTTCAAGAAGTTCATTCCGGGTCCCAAGGTTAGGGATGCATTGCTGTTTAGGAAGTCGGTGGAGAAAGATGAGGATGACTCTGAGAAGGATGGGTTCTTTAAGAGGCTGCTAAGGGACAGTAGAGGTGATGATGAGACGGGGTCGAAGCGTAGAGATTCTTTGCTATTTAGGAAGTCATCGGAGAAGGATGATGATGATACAGAAAAGGATGGGTTCTTTAAGAGATTATTAAGGGATAGTAAGGGGGACGATGAAGAATTAACTTCTAGTTCAGAGGGGTTTTTTAAGAAATTGTTTCGTGAAAGTAAGAGCGATTCTGAGGATAAATCAGTTTCTAAATCAGTGGAGGATGAAGAAAAAGATGGGTTCTTTAAGAAGTTTTTCAAAGAGAAATTTGAGGACAAAAAGGATAGAAATGAAGATGATGATACAGCACACTCAGAAGGAAAATGCTCGAAATCAGCTGAAGATGATGAGAAAGATGGGTTTTTCCGAAAGTTATTTAGTAATAAGTTTGAGGACAGGAAAGATGGGAATGATAAAACTGAGGAAGGGAGTGCCAATGGGGAGGACGAAGAGCATTCTGACTTTTCATTATTCCGAAGATTGTTCCGCGTGCATCCTGAAGATGGCAAAAGTATTGCTAATGAAAGCACCAATGGTAGCAGCTTGTTAGAAAGTAGTCCAGGCACTGAGAATTTTTTCCGTAAATTGTTTAGAGATCGAGACCGTTCAGTTGAAGATTCAGAGCTATTTGGTTCAAAAAAACATAAAGAGAAACATCCTGGTTCACCAAAGCAACAAAACGAAAAGTCAAGTGCAAAACCCCCACTTCCAAGTAATTCAGCATCCCATTACCGTAAAGGGGCATACCATGAGTCATTGGAGTTTGTGCAGTCACTATGTGAGACGTCATATGGTTTAGTGGATATATTTCCCATTGAAGATCGCAAAAGTGCACTTCGTGAGTCACTCGCAGAGATCAATTTGCACATTGCCAAGGCTCAAAATAATGGAGGAGTTGGCTTTCCAATGGGGAAGGGGATGTATCGCGTGGTGTATATACCAGAAGATGAAGCTGTTCTTTTGAATTCTAGGGAGAAGGCACCCTACCTCATCTGTGTTGAAGTCTTAAAAAGTGAAATTCCAAGTTCCCTTGTGAACGCTTTGAAACTAACAATTGTTTCGTTTCTTTCTTTTGTGAATAATTTGTTTAGCAATCCAAAGGATACATCTGGCTCTCAAAAGCTCTGTCGAGGAGGAATTCCTTTAGCAAATGGAGATGCACTTCTGCCAAGACCACCTCCCTGGGCATATCCTTTGTGGACTGTCCAAGAGGTCTATCGTAATAGTAATGATAGGATGTCAAGTTCTACTGCTCATGCAATTGACCAGGCAATGTCACATACGCCAGAGGCAAAAAAGAAATTTGTTACTCTGAAAATATCGGTGGAGAAGAAGTTGCCTAGCCAGACTCTGAAAATAGAGAATATATCAAACAGTAGTAGAGAAGAGGCTCTTAATTGTGCATCAAATGAAGCACGAGGGAGTAATTTGGAGTGGGTAACGGTGGTGCTTACAGCAGATCCTGGTTTTAGGATGGAGGACATTGAGGATCAAGGACCATCTCGAAGGAAGGAACACCGTCGTGTTCCAAGTACAGTGGCTATAGAAGAAGTAAAGGCTGCTGCAGCAAAAGGAGAAGCACCTCCTGGACTCCCTTTGAAAGGGGCTGGTCAGGATTCATCAGATGCACGGCCAACGGCTAATGGTGGTACTCCTAAGGCCAGCGATGCGTTGTCTGGTGAACTTTGGGAGATAAAGAAGGAGAGAATACGGAAGTCTTCAGTTTATGGAAAGTTACCTGGTTGGGACTTGCGCTCTGTCATTGTGAAGAGTGGTGATGATTGTAGACAGGAGCACCTTGCTGTGCAGCTTATTTCTCACTTCTATGATATATTCCAAGAAGCTGGGCTTCCCCTCTGGTTGCGACCTTATGAAGTCTTAGTTACTTCTTCTTACACAGCTCTCATTGAAACAATTCCAGATACGGCTTCACTTCATTCTATCAAAAGTAGACATCCCAACATCACTAGCTTGCGACACTTCTTTGCTGCTAAGTATCAAGAAAATTCTCCAACTTTTAAACTTGCCCAGAGAAATTTTGTTGAAAGTATGGCTGGATATTCCTTAGTGTGCTACCTTCTGCAGTTCGCACCTTGCAACAAAATTGATGCTTTTGTAAACATTAGACAGATATTGGTATTGGTGAAAGATAGGCACAATGGAAACCTTTTAATGGATGAAGAAGGTCATATTATACATATTGATTTTGGCTTTATGCTCTCCAATTCACCTGGGGGTGTAAATTTTGAGAGTGCTCCATTCAAGTTGACACGTGAACTTCTTGAGGTTATGGACTCTGATGCTGAAGGAGTTCCAAGCGAGTTCTTCGATTACTTTAAAGTTTTGTGCATTCAAGGGTTCCTTACATGTCGGAAGCATGCAGAACGTATTATTCTTCTTGTAGAGATGTTGCAGGACTCTGGTTTCCCATGCTTTAAAGGTGGTCCACGGACAATACAGAATCTAAGGAAACGATTTCACCTGAGTTTGACAGAAGAGTTCGTAGTGTCCGAGTCAAAGCCTGGATATGCATTCCAATCTACAAGAGGTGGCATTCCTTTGAATCTGGTTTCAGTTGGGCGGCATCCATATGCCAAAGAGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

1125

Amino Acids

126.59

Weight (kDa)

6.09

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI4KB-PIK1_PIK PF21245 48 - 118 8.3e-12 PI4KB/PIK1, accessory (PIK) domain
PI3_PI4_kinase PF00454 845 - 954 8.2e-11 Phosphatidylinositol 3- and 4-kinase
PI3_PI4_kinase PF00454 968 - 1071 1.7e-19 Phosphatidylinositol 3- and 4-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012264)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
AatII GACGTC 2 cut(s) 548, 1562
AccB1I GGYRCC 2 cut(s) 445, 1753
AccB7I CCANNNNNTGG 1 cut(s) 611
AccI GTMKAC 2 cut(s) 2560, 2725
AccII CGCG 4 cut(s) 49, 64, 1263, 1701
AciI CCGC 7 cut(s) 47, 49, 64, 449, 554, 1261, 3355
AclWI GGATC 3 cut(s) 149, 2228, 2271
AcoI YGGCCR 1 cut(s) 2405
AcsI RAATTY 9 cut(s) 1040, 1345, 1738, 1791, 1911, 2075, 2779, 2809, 3016
AcuI CTGAAG 4 cut(s) 1134, 1293, 2478, 3099
AcvI CACGTG 1 cut(s) 3047
AcyI GRCGYC 3 cut(s) 446, 545, 1559
AdeI CACNNNGTG 2 cut(s) 1553, 1613
AfaI GTAC 5 cut(s) 161, 209, 267, 2308, 2425
AfiI CCNNNNNNNGG 9 cut(s) 224, 286, 590, 611, 678, 1277, 1513, 2375, 2947
AflII CTTAAG 1 cut(s) 323
AflIII ACRYGT 2 cut(s) 3044, 3140
AleI CACNNNNGTG 1 cut(s) 2295
AloI GAACNNNNNNTCC 2 cut(s) 2002, 2034
Alw21I GWGCWC 5 cut(s) 314, 366, 1609, 2571, 3031
Alw26I GTCTC 6 cut(s) 26, 180, 633, 776, 1368, 1550
Alw44I GTGCAC 1 cut(s) 1605
AlwI GGATC 3 cut(s) 149, 2228, 2271
AlwNI CAGNNNCTG 4 cut(s) 532, 1340, 2125, 2237
Ama87I CYCGRG 2 cut(s) 24, 482
AoxI GGCC 3 cut(s) 458, 2405, 2433
ApaLI GTGCAC 1 cut(s) 1605
ApeKI GCWGC 8 cut(s) 422, 754, 1314, 2333, 2336, 2339, 2581, 2762
ApoI RAATTY 9 cut(s) 1040, 1345, 1738, 1791, 1911, 2075, 2779, 2809, 3016
ArsI GACNNNNNNTTYG 2 cut(s) 1885, 1917
Asp700I GAANNNNTTC 5 cut(s) 1028, 1349, 1728, 2688, 3084
AspLEI GCGC 2 cut(s) 448, 2529
AspS9I GGNCC 5 cut(s) 66, 567, 668, 2270, 3218
AsuC2I CCSGG 4 cut(s) 178, 483, 484, 666
AsuHPI GGTGA 9 cut(s) 41, 49, 785, 1431, 2465, 2561, 2929, 2994, 3245
AvaI CYCGRG 2 cut(s) 24, 482
AvaII GGWCC 5 cut(s) 66, 567, 668, 2270, 3218
AxyI CCTNAGG 1 cut(s) 2430
BaeGI GKGCMC 1 cut(s) 1609
BanI GGYRCC 2 cut(s) 445, 1753
BanII GRGCYC 1 cut(s) 366
BarI GAAGNNNNNNTAC 2 cut(s) 1742, 1774
BauI CACGAG 1 cut(s) 2190
BbrPI CACGTG 1 cut(s) 3047
BbsI GAAGAC 2 cut(s) 540, 2484
Bbv12I GWGCWC 5 cut(s) 314, 366, 1609, 2571, 3031
BbvI GCAGC 8 cut(s) 409, 741, 1326, 2320, 2323, 2351, 2593, 2749
BceAI ACGGC 4 cut(s) 131, 2420, 2427, 2715
BciVI GTATCC 3 cut(s) 3, 393, 1870
BcnI CCSGG 4 cut(s) 178, 483, 484, 666
BcoDI GTCTC 6 cut(s) 26, 180, 633, 776, 1368, 1550
BfaI CTAG 5 cut(s) 474, 915, 1743, 2115, 2742
BfmI CTRYAG 3 cut(s) 2316, 2337, 2855
BfoI RGCGCY 1 cut(s) 449
BfrI CTTAAG 1 cut(s) 323
BfuI GTATCC 3 cut(s) 3, 393, 1870
BlpI GCTNAGC 1 cut(s) 360
Bme18I GGWCC 5 cut(s) 66, 567, 668, 2270, 3218
BmeT110I CYCGRG 2 cut(s) 24, 482
BmgT120I GGNCC 5 cut(s) 66, 567, 668, 2270, 3218
BmiI GGNNCC 5 cut(s) 447, 669, 670, 1755, 3134
BmrI ACTGGG 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 540, 2484
BplI GAGNNNNNCTC 6 cut(s) 44, 76, 177, 209, 710, 742
Bpu10I CCTNAGC 1 cut(s) 758
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 320, 3077
BpuMI CCSGG 4 cut(s) 178, 483, 484, 666
BsaAI YACGTR 1 cut(s) 3047
BsaHI GRCGYC 3 cut(s) 446, 545, 1559
BsaI GGTCTC 1 cut(s) 1368
BsaXI ACNNNNNCTCC 2 cut(s) 2093, 2123
Bsc4I CCNNNNNNNGG 9 cut(s) 224, 286, 590, 611, 678, 1277, 1513, 2375, 2947
Bse1I ACTGG 2 cut(s) 18, 78
Bse21I CCTNAGG 1 cut(s) 2430
Bse3DI GCAATG 4 cut(s) 218, 686, 1641, 2052
BseLI CCNNNNNNNGG 9 cut(s) 224, 286, 590, 611, 678, 1277, 1513, 2375, 2947
BseMI GCAATG 4 cut(s) 218, 686, 1641, 2052
BseMII CTCAG 9 cut(s) 351, 476, 575, 720, 957, 1101, 1185, 1332, 3248
BseNI ACTGG 2 cut(s) 18, 78
BseRI GAGGAG 2 cut(s) 1680, 1920
BseSI GKGCMC 1 cut(s) 1609
BseXI GCAGC 8 cut(s) 409, 741, 1326, 2320, 2323, 2351, 2593, 2749
BseYI CCCAGC 2 cut(s) 275, 2618
BsgI GTGCAG 2 cut(s) 1562, 2600
Bsh1236I CGCG 4 cut(s) 49, 64, 1263, 1701
BshFI GGCC 3 cut(s) 460, 2407, 2435
BshNI GGYRCC 2 cut(s) 445, 1753
BsiHKAI GWGCWC 5 cut(s) 314, 366, 1609, 2571, 3031
BsiHKCI CYCGRG 2 cut(s) 24, 482
BsiSI CCGG 4 cut(s) 87, 177, 483, 665
BslFI GGGAC 5 cut(s) 30, 654, 776, 908, 2534
BslI CCNNNNNNNGG 9 cut(s) 224, 286, 590, 611, 678, 1277, 1513, 2375, 2947
BsmAI GTCTC 6 cut(s) 26, 180, 633, 776, 1368, 1550
BsmBI CGTCTC 3 cut(s) 26, 776, 1550
BsmFI GGGAC 5 cut(s) 30, 654, 776, 908, 2534
BsmI GAATGC 4 cut(s) 1228, 3123, 3305, 3327
BsnI GGCC 3 cut(s) 460, 2407, 2435
Bso31I GGTCTC 1 cut(s) 1368
BsoBI CYCGRG 2 cut(s) 24, 482
Bsp1286I GDGCHC 5 cut(s) 314, 366, 1609, 2571, 3031
Bsp1407I TGTACA 2 cut(s) 159, 207
Bsp143I GATC 7 cut(s) 54, 141, 1369, 1594, 1629, 2233, 2263
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 7 cut(s) 47, 49, 64, 449, 554, 1261, 3355
BspANI GGCC 3 cut(s) 460, 2407, 2435
BspCNI CTCAG 9 cut(s) 352, 475, 574, 721, 958, 1100, 1186, 1333, 3249
BspFNI CGCG 4 cut(s) 49, 64, 1263, 1701
BspLI GGNNCC 5 cut(s) 447, 669, 670, 1755, 3134
BspMAI CTGCAG 2 cut(s) 2341, 2859
BspPI GGATC 3 cut(s) 149, 2228, 2271
BspQI GCTCTTC 1 cut(s) 1218
BspT107I GGYRCC 2 cut(s) 445, 1753
BspTI CTTAAG 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 1368
BsrDI GCAATG 4 cut(s) 218, 686, 1641, 2052
BsrGI TGTACA 2 cut(s) 159, 207
BsrI ACTGG 2 cut(s) 18, 78
BssMI GATC 7 cut(s) 54, 141, 1369, 1594, 1629, 2233, 2263
BssNI GRCGYC 3 cut(s) 446, 545, 1559
BssSI CACGAG 1 cut(s) 2190
BssT1I CCWWGG 2 cut(s) 672, 1647
Bst2BI CACGAG 1 cut(s) 2190
Bst6I CTCTTC 4 cut(s) 1218, 2154, 2537, 3264
BstACI GRCGYC 3 cut(s) 446, 545, 1559
BstAFI CTTAAG 1 cut(s) 323
BstAUI TGTACA 2 cut(s) 159, 207
BstBAI YACGTR 1 cut(s) 3047
BstC8I GCNNGC 6 cut(s) 357, 558, 1265, 2437, 2747, 3153
BstDSI CCRYGG 2 cut(s) 47, 3221
BstENI CCTNNNNNAGG 1 cut(s) 2373
BstFNI CGCG 4 cut(s) 49, 64, 1263, 1701
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 2 cut(s) 448, 2529
BstKTI GATC 7 cut(s) 57, 144, 1372, 1597, 1632, 2236, 2266
BstMAI GTCTC 6 cut(s) 26, 180, 633, 776, 1368, 1550
BstMBI GATC 7 cut(s) 54, 141, 1369, 1594, 1629, 2233, 2263
BstMWI GCNNNNNNNGC 4 cut(s) 361, 457, 2339, 2441
BstNSI RCATGY 2 cut(s) 3144, 3155
BstSFI CTRYAG 3 cut(s) 2316, 2337, 2855
BstSLI GKGCMC 1 cut(s) 1609
BstUI CGCG 4 cut(s) 49, 64, 1263, 1701
BstV1I GCAGC 8 cut(s) 409, 741, 1326, 2320, 2323, 2351, 2593, 2749
BstV2I GAAGAC 2 cut(s) 540, 2484
BstX2I RGATCY 1 cut(s) 2233
BstXI CCANNNNNNTGG 2 cut(s) 1956, 2618
BstYI RGATCY 1 cut(s) 2233
Bsu36I CCTNAGG 1 cut(s) 2430
BsuI GTATCC 3 cut(s) 3, 393, 1870
BsuRI GGCC 3 cut(s) 460, 2407, 2435
BtgI CCRYGG 2 cut(s) 47, 3221
BtgZI GCGATG 1 cut(s) 2454
BtsIMutI CAGTG 4 cut(s) 85, 996, 1338, 2316
Cac8I GCNNGC 6 cut(s) 357, 558, 1265, 2437, 2747, 3153
CaiI CAGNNNCTG 4 cut(s) 532, 1340, 2125, 2237
CfoI GCGC 2 cut(s) 448, 2529
Cfr13I GGNCC 5 cut(s) 66, 567, 668, 2270, 3218
Cfr42I CCGCGG 1 cut(s) 50
Cfr9I CCCGGG 1 cut(s) 482
CsiI ACCWGGT 2 cut(s) 495, 2512
Csp6I GTAC 5 cut(s) 160, 208, 266, 2307, 2424
CspCI CAANNNNNGTGG 2 cut(s) 2292, 2327
CviAII CATG 6 cut(s) 167, 1523, 2030, 3141, 3152, 3204
CviQI GTAC 5 cut(s) 160, 208, 266, 2307, 2424
DinI GGCGCC 1 cut(s) 447
DpnI GATC 7 cut(s) 56, 143, 1371, 1596, 1631, 2235, 2265
DpnII GATC 7 cut(s) 54, 141, 1369, 1594, 1629, 2233, 2263
DraI TTTAAA 3 cut(s) 2794, 3112, 3211
DraIII CACNNNGTG 2 cut(s) 1553, 1613
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 2405
Eam1104I CTCTTC 4 cut(s) 1218, 2154, 2537, 3264
EarI CTCTTC 4 cut(s) 1218, 2154, 2537, 3264
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 2 cut(s) 672, 1647
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 1368
Eco47I GGWCC 5 cut(s) 66, 567, 668, 2270, 3218
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 4 cut(s) 1134, 1293, 2478, 3099
Eco72I CACGTG 1 cut(s) 3047
Eco81I CCTNAGG 1 cut(s) 2430
Eco88I CYCGRG 2 cut(s) 24, 482
EcoICRI GAGCTC 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 2373
EcoO109I RGGNCCY 2 cut(s) 567, 668
EcoRI GAATTC 2 cut(s) 1738, 1911
EcoT14I CCWWGG 2 cut(s) 672, 1647
EcoT22I ATGCAT 2 cut(s) 688, 3307
EcoT38I GRGCYC 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 447
EheI GGCGCC 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 672, 1647
Esp3I CGTCTC 3 cut(s) 26, 776, 1550
FaeI CATG 6 cut(s) 170, 1526, 2033, 3144, 3155, 3207
FalI AAGNNNNNCTT 8 cut(s) 1716, 1748, 2151, 2183, 2607, 2639, 3120, 3152
FaqI GGGAC 5 cut(s) 30, 654, 776, 908, 2534
FatI CATG 6 cut(s) 166, 1522, 2029, 3140, 3151, 3203
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 2 cut(s) 1564, 3364
FblI GTMKAC 2 cut(s) 2560, 2725
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 5 cut(s) 474, 915, 1743, 2115, 2742
GlaI GCGC 2 cut(s) 447, 2528
GsaI CCCAGC 2 cut(s) 279, 2622
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 3 cut(s) 460, 2407, 2435
HapII CCGG 4 cut(s) 87, 177, 483, 665
HhaI GCGC 2 cut(s) 448, 2529
Hin1I GRCGYC 3 cut(s) 446, 545, 1559
Hin1II CATG 6 cut(s) 170, 1526, 2033, 3144, 3155, 3207
Hin6I GCGC 2 cut(s) 446, 2527
HinP1I GCGC 2 cut(s) 446, 2527
HincII GTYRAC 1 cut(s) 3042
HindII GTYRAC 1 cut(s) 3042
HpaII CCGG 4 cut(s) 87, 177, 483, 665
HphI GGTGA 9 cut(s) 41, 49, 785, 1431, 2465, 2561, 2929, 2994, 3245
Hpy99I CGWCG 1 cut(s) 2298
HpyCH4IV ACGT 4 cut(s) 545, 1559, 3046, 3160
HpyF10VI GCNNNNNNNGC 4 cut(s) 361, 457, 2339, 2441
HpySE526I ACGT 4 cut(s) 545, 1559, 3046, 3160
Hsp92I GRCGYC 3 cut(s) 446, 545, 1559
Hsp92II CATG 6 cut(s) 170, 1526, 2033, 3144, 3155, 3207
HspAI GCGC 2 cut(s) 446, 2527
KasI GGCGCC 1 cut(s) 445
KflI GGGWCCC 1 cut(s) 668
KspI CCGCGG 1 cut(s) 50
Kzo9I GATC 7 cut(s) 54, 141, 1369, 1594, 1629, 2233, 2263
LguI GCTCTTC 1 cut(s) 1218
LmnI GCTCC 2 cut(s) 2566, 3034
Lsp1109I GCAGC 8 cut(s) 409, 741, 1326, 2320, 2323, 2351, 2593, 2749
MabI ACCWGGT 2 cut(s) 495, 2512
MaeI CTAG 5 cut(s) 474, 915, 1743, 2115, 2742
MaeII ACGT 4 cut(s) 545, 1559, 3046, 3160
MaeIII GTNAC 8 cut(s) 318, 1545, 1617, 2049, 2080, 2212, 2508, 2656
MalI GATC 7 cut(s) 56, 143, 1371, 1596, 1631, 2235, 2265
MboI GATC 7 cut(s) 54, 141, 1369, 1594, 1629, 2233, 2263
MfeI CAATTG 2 cut(s) 1827, 2034
MflI RGATCY 1 cut(s) 2233
MhlI GDGCHC 5 cut(s) 314, 366, 1609, 2571, 3031
Mly113I GGCGCC 1 cut(s) 446
MmeI TCCRAC 2 cut(s) 2810, 3125
Mph1103I ATGCAT 2 cut(s) 688, 3307
MroXI GAANNNNTTC 5 cut(s) 1028, 1349, 1728, 2688, 3084
MslI CAYNNNNRTG 4 cut(s) 305, 2295, 2598, 3363
MspA1I CMGCKG 3 cut(s) 49, 451, 1112
MspCI CTTAAG 1 cut(s) 323
MspI CCGG 4 cut(s) 87, 177, 483, 665
MunI CAATTG 2 cut(s) 1827, 2034
Mva1269I GAATGC 4 cut(s) 1228, 3123, 3305, 3327
MvnI CGCG 4 cut(s) 49, 64, 1263, 1701
MwoI GCNNNNNNNGC 4 cut(s) 361, 457, 2339, 2441
NarI GGCGCC 1 cut(s) 446
NciI CCSGG 4 cut(s) 178, 483, 484, 666
NdeI CATATG 2 cut(s) 1564, 3364
NdeII GATC 7 cut(s) 54, 141, 1369, 1594, 1629, 2233, 2263
NlaIII CATG 6 cut(s) 170, 1526, 2033, 3144, 3155, 3207
NlaIV GGNNCC 5 cut(s) 447, 669, 670, 1755, 3134
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 4 cut(s) 318, 1545, 1617, 2049
NsiI ATGCAT 2 cut(s) 688, 3307
NspI RCATGY 2 cut(s) 3144, 3155
OliI CACNNNNGTG 1 cut(s) 2295
PaeI GCATGC 1 cut(s) 3155
PasI CCCWGGG 1 cut(s) 1956
PciI ACATGT 1 cut(s) 3140
PciSI GCTCTTC 1 cut(s) 1218
PcsI WCGNNNNNNNCGW 2 cut(s) 372, 3282
PctI GAATGC 4 cut(s) 1228, 3123, 3305, 3327
PdmI GAANNNNTTC 5 cut(s) 1028, 1349, 1728, 2688, 3084
PfeI GAWTC 9 cut(s) 83, 106, 371, 803, 962, 1391, 2390, 3235, 3337
PflFI GACNNNGTC 1 cut(s) 787
PflMI CCANNNNNTGG 1 cut(s) 611
PfoI TCCNGGA 1 cut(s) 2359
PluTI GGCGCC 1 cut(s) 449
PmaCI CACGTG 1 cut(s) 3047
PmlI CACGTG 1 cut(s) 3047
Ppu21I YACGTR 1 cut(s) 3047
PpuMI RGGWCCY 2 cut(s) 567, 668
PscI ACATGT 1 cut(s) 3140
Psp124BI GAGCTC 1 cut(s) 366
Psp5II RGGWCCY 2 cut(s) 567, 668
PspCI CACGTG 1 cut(s) 3047
PspFI CCCAGC 2 cut(s) 275, 2618
PspN4I GGNNCC 5 cut(s) 447, 669, 670, 1755, 3134
PspPI GGNCC 5 cut(s) 66, 567, 668, 2270, 3218
PspPPI RGGWCCY 2 cut(s) 567, 668
PstI CTGCAG 2 cut(s) 2341, 2859
PstNI CAGNNNCTG 4 cut(s) 532, 1340, 2125, 2237
PsuI RGATCY 1 cut(s) 2233
PsyI GACNNNGTC 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 1112
RsaI GTAC 5 cut(s) 161, 209, 267, 2308, 2425
RsaNI GTAC 5 cut(s) 160, 208, 266, 2307, 2424
RseI CAYNNNNRTG 4 cut(s) 305, 2295, 2598, 3363
SacI GAGCTC 1 cut(s) 366
SacII CCGCGG 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 1218
Sau3AI GATC 7 cut(s) 54, 141, 1369, 1594, 1629, 2233, 2263
Sau96I GGNCC 5 cut(s) 66, 567, 668, 2270, 3218
SduI GDGCHC 5 cut(s) 314, 366, 1609, 2571, 3031
SexAI ACCWGGT 2 cut(s) 495, 2512
SfcI CTRYAG 3 cut(s) 2316, 2337, 2855
SfoI GGCGCC 1 cut(s) 447
Sfr303I CCGCGG 1 cut(s) 50
SgrBI CCGCGG 1 cut(s) 50
SinI GGWCC 5 cut(s) 66, 567, 668, 2270, 3218
SmaI CCCGGG 1 cut(s) 484
SmiMI CAYNNNNRTG 4 cut(s) 305, 2295, 2598, 3363
SmlI CTYRAG 3 cut(s) 323, 335, 3056
SmoI CTYRAG 3 cut(s) 323, 335, 3056
SphI GCATGC 1 cut(s) 3155
SsiI CCGC 7 cut(s) 47, 49, 64, 449, 554, 1261, 3355
SspDI GGCGCC 1 cut(s) 445
SspMI CTAG 5 cut(s) 474, 915, 1743, 2115, 2742
SstI GAGCTC 1 cut(s) 366
StyI CCWWGG 2 cut(s) 672, 1647
TaiI ACGT 4 cut(s) 548, 1562, 3049, 3163
TatI WGTACW 4 cut(s) 159, 207, 265, 2306
TauI GCSGC 4 cut(s) 49, 451, 556, 3358
TfiI GAWTC 9 cut(s) 83, 106, 371, 803, 962, 1391, 2390, 3235, 3337
TscAI CASTG 4 cut(s) 85, 996, 1345, 2316
TseFI GTSAC 4 cut(s) 318, 1545, 1617, 2049
TseI GCWGC 8 cut(s) 422, 754, 1314, 2333, 2336, 2339, 2581, 2762
Tsp45I GTSAC 4 cut(s) 318, 1545, 1617, 2049
TspGWI ACGGA 4 cut(s) 50, 1343, 2500, 3238
TspMI CCCGGG 1 cut(s) 482
TspRI CASTG 4 cut(s) 85, 996, 1345, 2316
Tth111I GACNNNGTC 1 cut(s) 787
Van91I CCANNNNNTGG 1 cut(s) 611
Vha464I CTTAAG 1 cut(s) 323
VneI GTGCAC 1 cut(s) 1605
VpaK11BI GGWCC 5 cut(s) 66, 567, 668, 2270, 3218
XagI CCTNNNNNAGG 1 cut(s) 2373
XapI RAATTY 9 cut(s) 1040, 1345, 1738, 1791, 1911, 2075, 2779, 2809, 3016
XceI RCATGY 2 cut(s) 3144, 3155
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmaI CCCGGG 1 cut(s) 482
XmiI GTMKAC 2 cut(s) 2560, 2725
XmnI GAANNNNTTC 5 cut(s) 1028, 1349, 1728, 2688, 3084
XspI CTAG 5 cut(s) 474, 915, 1743, 2115, 2742
ZraI GACGTC 2 cut(s) 546, 1560
Zsp2I ATGCAT 2 cut(s) 688, 3307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.