Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005394

Physical Location & Seq

Genomic Coordinates Reverse (-)

16967092 .. 16968384

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCTCCACCATCGCCAACTCTCTCTCCTTCAAGCTCGGCGTTCCTCTCCGCCCTCATCCTCACCCCACTCACACCTCCGCTTCACTCGGATTCACAACCTTCCGCCGAAGCTACGTCGTTTCGTCCTCTGCTTTCGCCAATCAAAACCTCGAGTATGTGATTGTTGGTGGTGGCAATGCGGCTGGCTACGCGGCTAGGACTTTCGTCGAAAATGGAATGGCCGATGGGTGCCTTGCTATTGTGTCTAAAGAGGCTTATGCGCCTTATGAGCGTCCGGCTACGACTAAAGCGTATTTGTTCCCATTAGAAAAGAAGCCGGCTCGCTTACGGCACGAGAAGGTGGTCATTGTCGGTGGTGGTTATATTGGTATGGAGGTTGCTGCAGCCATCGGTTGGAAACTTGATACAACAATCATATTTCCGGAGAACCATCTTATGTCAAGACTGTTTACTCCTTCACTTGCCCGGAGATATGAAGAATTCTACAAAGAGAATGGTGTTAAATTCTTAAAGGGTAACTCCCTAAAGAATATAGAAGCCGGTTCCAATGGACGTGTAACTCATGTTAAGCTTGAAGATGGATCTAGTATAGAAGCGGATGCGGTAATTGTTGGTATAGGAGCAAAACCTGCTGTCGGTCCTTTTGAAAGAGTGGGTTTAGATTCCGGTGTTGGTGGTATACGGGTTGATGGTCTGTTCCGGACAAGTGTACCTGGAATCTTTGCGATTGGTGATGTTGCAGCATTCCCATTGAAGATCTACAATCGTATAGCACGGGTGGAACATGTAGATCATGCTCGTCGATCTGCCCGACATTGCATTAAAGCTCTACCGACTGCACAAACTCACACATATGATTATCTTCCATCTTTCTACTCGAGGGTATTTGAGTATGAAGGCAGCCCGAGGAAAATATGGTGGCAATTTTATGGGGACAATGTTGGAGAGACAGTTGAAGTTGGGAATTTTGATCCTAAGATTGCAACTTTACGGATAGATTCGGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010035 GO:0010038 GO:0010319 GO:0017076 GO:0030554 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

337

Amino Acids

36.89

Weight (kDa)

9.24

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	103 - 270	2.3e-33	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	114 - 195	1.8e-15	Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C	PF21791	289 - 327	2.5e-06	Monodehydroascorbate reductase 3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63940 AT1G63940 AT1G63940 AT1G63940
fragaria_vesca	FvH4_5g03130 FvH4_5g03130 FvH4_5g03130
malus_domestica	MD14G1111300.v1.1
prunus_persica	Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1
pyrus_communis	pycom14g10610
rosa_chinensis	RchiOBHm_Chr7g0196651
rosa_laevigata	RLG00000004000
rosa_multiflora	Rmu_sc0006080.1_g000012
rosa_roxburghii	Rroxscaffold_3G00231660 Rroxscaffold_3G00259130 Rroxscaffold_4G00330440 Rroxscaffold_5G00367630 Rroxscaffold_5G00367640 Rroxscaffold_6G00417800
rosa_rugosa	Rorug07G0035700
rosa_samantha	Rh7AG159400 Rh7BG161400 Rh7CG167800 Rh7DG160700
rosa_wichuraiana	Rw7G013950

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	682
AccII	CGCG	1 cut(s)	194
AccIII	TCCGGA	2 cut(s)	424, 702
AciI	CCGC	7 cut(s)	52, 81, 106, 182, 194, 599, 605
AclWI	GGATC	2 cut(s)	592, 968
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	3 cut(s)	482, 506, 967
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	2 cut(s)	396, 638
AflIII	ACRYGT	2 cut(s)	556, 787
AgsI	TTSAA	5 cut(s)	34, 578, 650, 757, 959
AjiI	CACGTC	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	4 cut(s)	37, 114, 574, 830
AluI	AGCT	4 cut(s)	37, 114, 574, 830
Alw26I	GTCTC	1 cut(s)	944
AlwI	GGATC	2 cut(s)	592, 968
Ama87I	CYCGRG	3 cut(s)	152, 880, 907
Aor13HI	TCCGGA	2 cut(s)	424, 702
AoxI	GGCC	2 cut(s)	3, 222
ApeKI	GCWGC	4 cut(s)	383, 386, 743, 903
ApoI	RAATTY	3 cut(s)	482, 506, 967
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	641
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	56, 746
AvaI	CYCGRG	3 cut(s)	152, 880, 907
AvaII	GGWCC	1 cut(s)	641
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BanI	GGYRCC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	335
BbvI	GCAGC	4 cut(s)	370, 398, 755, 915
BccI	CCATC	7 cut(s)	20, 221, 398, 441, 575, 686, 877
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	944
BfaI	CTAG	2 cut(s)	198, 588
BfmI	CTRYAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	640
BglII	AGATCT	1 cut(s)	759
BisI	GCNGC	6 cut(s)	183, 195, 384, 387, 744, 904
BlsI	GCNGC	6 cut(s)	184, 196, 385, 388, 745, 905
Bme1390I	CCNGG	2 cut(s)	469, 717
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	3 cut(s)	152, 880, 907
BmgBI	CACGTC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	2 cut(s)	233, 547
BmrFI	CCNGG	2 cut(s)	469, 717
BmsI	GCATC	1 cut(s)	592
BoxI	GACNNNNGTC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	908
BsaWI	WCCGGW	3 cut(s)	424, 668, 702
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 939, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 638
Bse118I	RCCGGY	2 cut(s)	319, 542
Bse3DI	GCAATG	2 cut(s)	184, 817
BseAI	TCCGGA	2 cut(s)	424, 702
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	908
BseGI	GGATG	2 cut(s)	58, 607
BseLI	CCNNNNNNNGG	2 cut(s)	396, 638
BseMI	GCAATG	2 cut(s)	184, 817
BseXI	GCAGC	4 cut(s)	370, 398, 755, 915
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	5, 224
BshNI	GGYRCC	1 cut(s)	231
BsiHKCI	CYCGRG	3 cut(s)	152, 880, 907
BsiSI	CCGG	7 cut(s)	278, 320, 425, 469, 543, 669, 703
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	2 cut(s)	396, 638
BsmAI	GTCTC	1 cut(s)	944
BsmFI	GGGAC	1 cut(s)	950
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	2 cut(s)	5, 224
BsoBI	CYCGRG	3 cut(s)	152, 880, 907
Bsp13I	TCCGGA	2 cut(s)	424, 702
Bsp143I	GATC	5 cut(s)	584, 759, 793, 806, 973
BspACI	CCGC	7 cut(s)	52, 81, 106, 182, 194, 599, 605
BspANI	GGCC	2 cut(s)	5, 224
BspEI	TCCGGA	2 cut(s)	424, 702
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	233, 547
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	2 cut(s)	592, 968
BspT107I	GGYRCC	1 cut(s)	231
BsrDI	GCAATG	2 cut(s)	184, 817
BsrFI	RCCGGY	2 cut(s)	319, 542
BssAI	RCCGGY	2 cut(s)	319, 542
BssECI	CCNNGG	1 cut(s)	908
BssMI	GATC	5 cut(s)	584, 759, 793, 806, 973
BssNAI	GTATAC	1 cut(s)	683
BssSI	CACGAG	1 cut(s)	335
Bst1107I	GTATAC	1 cut(s)	683
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	2 cut(s)	450, 955
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	3 cut(s)	187, 321, 325
BstDEI	CTNAG	1 cut(s)	978
BstF5I	GGATG	2 cut(s)	58, 607
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	5 cut(s)	587, 762, 796, 809, 976
BstMAI	GTCTC	1 cut(s)	944
BstMBI	GATC	5 cut(s)	584, 759, 793, 806, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 271, 632
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	791
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	467, 715
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	370, 398, 755, 915
BstX2I	RGATCY	2 cut(s)	584, 759
BstYI	RGATCY	2 cut(s)	584, 759
BstZ17I	GTATAC	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	5, 224
BtrI	CACGTC	1 cut(s)	557
BtsCI	GGATG	2 cut(s)	58, 607
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	3 cut(s)	187, 321, 325
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	2 cut(s)	319, 542
Cfr13I	GGNCC	1 cut(s)	641
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	3 cut(s)	566, 788, 797
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	1 cut(s)	978
DpnI	GATC	5 cut(s)	586, 761, 795, 808, 975
DpnII	GATC	5 cut(s)	584, 759, 793, 806, 973
EaeI	YGGCCR	1 cut(s)	222
EciI	GGCGGA	2 cut(s)	41, 95
Eco47I	GGWCC	1 cut(s)	641
Eco88I	CYCGRG	3 cut(s)	152, 880, 907
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	715
FaeI	CATG	3 cut(s)	569, 791, 800
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	3 cut(s)	565, 787, 796
FauNDI	CATATG	1 cut(s)	856
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	6 cut(s)	183, 195, 384, 387, 744, 904
FokI	GGATG	2 cut(s)	45, 614
Fsp4HI	GCNGC	6 cut(s)	183, 195, 384, 387, 744, 904
FspBI	CTAG	2 cut(s)	198, 588
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	6 cut(s)	183, 195, 384, 387, 744, 904
HaeIII	GGCC	2 cut(s)	5, 224
HapII	CCGG	7 cut(s)	278, 320, 425, 469, 543, 669, 703
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	569, 791, 800
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	4 cut(s)	93, 665, 720, 1001
HpaII	CCGG	7 cut(s)	278, 320, 425, 469, 543, 669, 703
HphI	GGTGA	2 cut(s)	56, 746
Hpy166II	GTNNAC	3 cut(s)	453, 683, 713
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	3 cut(s)	425, 444, 703
Hpy8I	GTNNAC	3 cut(s)	453, 683, 713
Hpy99I	CGWCG	3 cut(s)	122, 212, 807
HpyAV	CCTTC	5 cut(s)	40, 112, 334, 468, 893
HpyCH4III	ACNGT	2 cut(s)	450, 955
HpyCH4IV	ACGT	2 cut(s)	117, 556
HpyCH4V	TGCA	5 cut(s)	386, 743, 822, 842, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 271, 632
HpyF3I	CTNAG	1 cut(s)	978
HpySE526I	ACGT	2 cut(s)	117, 556
Hsp92II	CATG	3 cut(s)	569, 791, 800
HspAI	GCGC	1 cut(s)	263
Kpn2I	TCCGGA	2 cut(s)	424, 702
KroI	GCCGGC	1 cut(s)	319
KroNI	GCCGGC	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	584, 759, 793, 806, 973
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	4 cut(s)	370, 398, 755, 915
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	198, 588
MaeII	ACGT	2 cut(s)	117, 556
MaeIII	GTNAC	2 cut(s)	518, 559
MalI	GATC	5 cut(s)	586, 761, 795, 808, 975
MboI	GATC	5 cut(s)	584, 759, 793, 806, 973
MboII	GAAGA	4 cut(s)	491, 590, 769, 857
MflI	RGATCY	2 cut(s)	584, 759
MluCI	AATT	6 cut(s)	482, 506, 609, 926, 967, 1009
MmeI	TCCRAC	2 cut(s)	377, 925
MroI	TCCGGA	2 cut(s)	424, 702
MroNI	GCCGGC	1 cut(s)	319
MseI	TTAA	4 cut(s)	504, 512, 570, 825
MslI	CAYNNNNRTG	1 cut(s)	855
MspI	CCGG	7 cut(s)	278, 320, 425, 469, 543, 669, 703
MspR9I	CCNGG	2 cut(s)	469, 717
Mva1269I	GAATGC	1 cut(s)	746
MvaI	CCWGG	1 cut(s)	717
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	191, 271, 632
NaeI	GCCGGC	1 cut(s)	321
NciI	CCSGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	5 cut(s)	584, 759, 793, 806, 973
NgoMIV	GCCGGC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	569, 791, 800
NlaIV	GGNNCC	2 cut(s)	233, 547
NmeAIII	GCCGAG	1 cut(s)	18
NspI	RCATGY	1 cut(s)	791
PaeR7I	CTCGAG	2 cut(s)	152, 880
PciI	ACATGT	1 cut(s)	787
PcsI	WCGNNNNNNNCGW	2 cut(s)	290, 811
PctI	GAATGC	1 cut(s)	746
PdiI	GCCGGC	1 cut(s)	321
PfeI	GAWTC	4 cut(s)	93, 665, 720, 1001
PflMI	CCANNNNNTGG	1 cut(s)	396
PkrI	GCNGC	6 cut(s)	184, 196, 385, 388, 745, 905
PscI	ACATGT	1 cut(s)	787
PshAI	GACNNNNGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	2 cut(s)	233, 547
PspPI	GGNCC	1 cut(s)	641
PspXI	VCTCGAGB	2 cut(s)	152, 880
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	2 cut(s)	584, 759
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	855
SaqAI	TTAA	4 cut(s)	504, 512, 570, 825
SatI	GCNGC	6 cut(s)	183, 195, 384, 387, 744, 904
Sau3AI	GATC	5 cut(s)	584, 759, 793, 806, 973
Sau96I	GGNCC	1 cut(s)	641
ScrFI	CCNGG	2 cut(s)	469, 717
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	384
Sfr274I	CTCGAG	2 cut(s)	152, 880
SinI	GGWCC	1 cut(s)	641
SlaI	CTCGAG	2 cut(s)	152, 880
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	2 cut(s)	152, 880
SmoI	CTYRAG	2 cut(s)	152, 880
Sse9I	AATT	6 cut(s)	482, 506, 609, 926, 967, 1009
SsiI	CCGC	7 cut(s)	52, 81, 106, 182, 194, 599, 605
SspMI	CTAG	2 cut(s)	198, 588
StyD4I	CCNGG	2 cut(s)	467, 715
TaaI	ACNGT	2 cut(s)	450, 955
TaiI	ACGT	2 cut(s)	120, 559
TaqI	TCGA	4 cut(s)	153, 210, 805, 881
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	6 cut(s)	482, 506, 609, 926, 967, 1009
TauI	GCSGC	2 cut(s)	185, 197
TfiI	GAWTC	4 cut(s)	93, 665, 720, 1001
Tru1I	TTAA	4 cut(s)	504, 512, 570, 825
Tru9I	TTAA	4 cut(s)	504, 512, 570, 825
TseI	GCWGC	4 cut(s)	383, 386, 743, 903
TspDTI	ATGAA	2 cut(s)	492, 912
TspGWI	ACGGA	1 cut(s)	1009
Van91I	CCANNNNNTGG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	641
XapI	RAATTY	3 cut(s)	482, 506, 967
XceI	RCATGY	1 cut(s)	791
XhoI	CTCGAG	2 cut(s)	152, 880
XmiI	GTMKAC	1 cut(s)	682
XspI	CTAG	2 cut(s)	198, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.