Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005394

Physical Location & Seq

Genomic Coordinates Forward (+)

49471922 .. 49473248

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCTCCACCATCACCAACTCTCTCCTTCAAGCTCGGCGTTCCTCTCCGCCCTCATCCTCACCCCACTCACACCTCCGCTTCACTCGGATTCACAACCTTCCGCCGAAGCTACGTCGTTTCGTCCTCTCGCTTTCGCCAATCAAAACCGCGACATTCCCATTGAAGATCTACAATCGTATAGCACGGGTGGAACATGTAGATCATGCTCGTCGATCCGCCCCGCATTGCATTAAAGCTCTACCGACTGCACAAACTCACACATATGATTATCTTCCATCTTTCTACTCGAGGGTATTTGAGTATGAAGGCAGCCCGAGGAAAATATGGTGGCAATTTTATGGGGACAATGTTGGAGAGACAGTTGAAGTTGGGAATTTTGATCCTAAGATTGCAACTTTACGGATAGATTCGGTAAAGCGAAAGGTGTTCTCGTTGAAAGCGGAAGCCCCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010035 GO:0010038 GO:0010319 GO:0017076 GO:0030554 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

152

Amino Acids

17.49

Weight (kDa)

10.39

Isoelectric Point (pI)

62.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MDHAR3-like_C	PF21791	92 - 130	6.4e-07	Monodehydroascorbate reductase 3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63940 AT1G63940 AT1G63940 AT1G63940
fragaria_vesca	FvH4_5g03130 FvH4_5g03130 FvH4_5g03130
malus_domestica	MD14G1111300.v1.1
prunus_persica	Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1
pyrus_communis	pycom14g10610
rosa_chinensis	RchiOBHm_Chr7g0196651
rosa_laevigata	RLG00000004000
rosa_multiflora	Rmu_sc0006080.1_g000012
rosa_roxburghii	Rroxscaffold_3G00231660 Rroxscaffold_3G00259130 Rroxscaffold_4G00330440 Rroxscaffold_5G00367630 Rroxscaffold_5G00367640 Rroxscaffold_6G00417800
rosa_rugosa	Rorug07G0035700
rosa_samantha	Rh7AG159400 Rh7BG161400 Rh7CG167800 Rh7DG160700
rosa_wichuraiana	Rw7G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	152
AciI	CCGC	7 cut(s)	50, 79, 104, 150, 219, 224, 443
AclWI	GGATC	2 cut(s)	210, 377
AcsI	RAATTY	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	4 cut(s)	32, 166, 368, 439
AluBI	AGCT	3 cut(s)	35, 112, 239
AluI	AGCT	3 cut(s)	35, 112, 239
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	2 cut(s)	210, 377
Ama87I	CYCGRG	3 cut(s)	289, 316, 451
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	7, 54
AvaI	CYCGRG	3 cut(s)	289, 316, 451
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	2 cut(s)	20, 286
BcoDI	GTCTC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
BmeT110I	CYCGRG	3 cut(s)	289, 316, 451
BsaJI	CCNNGG	2 cut(s)	317, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bse3DI	GCAATG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	317, 452
BseGI	GGATG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	3 cut(s)	289, 316, 451
BslFI	GGGAC	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	3 cut(s)	289, 316, 451
Bsp143I	GATC	4 cut(s)	168, 202, 215, 382
BspACI	CCGC	7 cut(s)	50, 79, 104, 150, 219, 224, 443
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	152
BspPI	GGATC	2 cut(s)	210, 377
BsrDI	GCAATG	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	317, 452
BssMI	GATC	4 cut(s)	168, 202, 215, 382
Bst4CI	ACNGT	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	4 cut(s)	171, 205, 218, 385
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	4 cut(s)	168, 202, 215, 382
BstNSI	RCATGY	1 cut(s)	200
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	56
CviAII	CATG	2 cut(s)	197, 206
CviJI	RGCY	6 cut(s)	5, 35, 112, 239, 315, 449
CviKI_1	RGCY	6 cut(s)	5, 35, 112, 239, 315, 449
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	4 cut(s)	170, 204, 217, 384
DpnII	GATC	4 cut(s)	168, 202, 215, 382
EciI	GGCGGA	3 cut(s)	39, 93, 208
Eco88I	CYCGRG	3 cut(s)	289, 316, 451
FaeI	CATG	2 cut(s)	200, 209
FaiI	YATR	8 cut(s)	182, 198, 207, 265, 267, 306, 328, 342
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	2 cut(s)	196, 205
FauI	CCCGC	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	313
GluI	GCNGC	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	200, 209
HinfI	GANTC	2 cut(s)	91, 410
HphI	GGTGA	2 cut(s)	7, 54
Hpy188I	TCNGA	1 cut(s)	90
Hpy99I	CGWCG	2 cut(s)	120, 216
HpyAV	CCTTC	3 cut(s)	38, 110, 302
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	231, 251, 395
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	200, 209
Kzo9I	GATC	4 cut(s)	168, 202, 215, 382
Lsp1109I	GCAGC	1 cut(s)	324
MaeII	ACGT	1 cut(s)	115
MalI	GATC	4 cut(s)	170, 204, 217, 384
MboI	GATC	4 cut(s)	168, 202, 215, 382
MboII	GAAGA	2 cut(s)	178, 266
MflI	RGATCY	1 cut(s)	168
MluCI	AATT	2 cut(s)	335, 376
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	9 cut(s)	16, 55, 64, 70, 86, 137, 285, 312, 447
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	4 cut(s)	168, 202, 215, 382
NlaIII	CATG	2 cut(s)	200, 209
NmeAIII	GCCGAG	1 cut(s)	16
NspI	RCATGY	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	289
PciI	ACATGT	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	91, 410
PkrI	GCNGC	1 cut(s)	314
PscI	ACATGT	1 cut(s)	196
PspXI	VCTCGAGB	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	4 cut(s)	168, 202, 215, 382
SetI	ASST	8 cut(s)	37, 78, 102, 114, 118, 241, 429, 458
Sfr274I	CTCGAG	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	2 cut(s)	335, 376
SsiI	CCGC	7 cut(s)	50, 79, 104, 150, 219, 224, 443
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	214, 290
TasI	AATT	2 cut(s)	335, 376
TfiI	GAWTC	2 cut(s)	91, 410
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	418
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.