Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005394

Physical Location & Seq

Genomic Coordinates Reverse (-)

39422574 .. 39424166

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTGTCAAAAGCAATACACCCAACTCTGTCGTCGGTTTGGTTGGTCTGGTGACTCACCTTGGGCCAAAATCATTGCAAAGGCCAAAATCATTGCACACCATTCATCTTGTCGTCCACTATCAATCCATATTCCACTCCCACTCTGTCCAGTACTCATTGCAGAACCAATCTCCCATTACCACAATTATCAAGCTCAAAATCCAATGTCTTCTGCAGTACTCCGCACCGGACGAATGGCCTCCACCATCGCCAACTCTCTCTCCTTCAAGCTCGGCGTTCCTCTCCGCCCTCATCCTCACCCCACTCACACCTCCGCTTCACTCGGATTCACAACCTTCCGCCGAAGCTACGTTGTTTCGTCCTCTCGTTTTCGCCAATCAAAATCGCGAGTATGTGATTGTTGGTGGTGGCGGCGGCTACGCGGCTAGGACTTTTGTCGAAAATGGAATGGTCGAAGAGTGCCTTGCTATTGTGTCTAAAGAGGCTTATGCACCTTATGAGCGTCCAGCTACGACTAAAGCGTATTTGTTCCCATTAGAAAAGAAGCCGGCTCGCTTACCCGGGTTTCATACTTGTGTTGGATCGGTGGGGAGCGGCAAACACCGACCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010035 GO:0010038 GO:0010319 GO:0017076 GO:0030554 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

205

Amino Acids

22.25

Weight (kDa)

9.3

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63940 AT1G63940 AT1G63940 AT1G63940
fragaria_vesca	FvH4_5g03130 FvH4_5g03130 FvH4_5g03130
malus_domestica	MD14G1111300.v1.1
prunus_persica	Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1
pyrus_communis	pycom14g10610
rosa_chinensis	RchiOBHm_Chr7g0196651
rosa_laevigata	RLG00000004000
rosa_multiflora	Rmu_sc0006080.1_g000012
rosa_roxburghii	Rroxscaffold_3G00231660 Rroxscaffold_3G00259130 Rroxscaffold_4G00330440 Rroxscaffold_5G00367630 Rroxscaffold_5G00367640 Rroxscaffold_6G00417800
rosa_rugosa	Rorug07G0035700
rosa_samantha	Rh7AG159400 Rh7BG161400 Rh7CG167800 Rh7DG160700
rosa_wichuraiana	Rw7G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	597
AccII	CGCG	2 cut(s)	390, 425
AciI	CCGC	8 cut(s)	225, 288, 317, 342, 414, 417, 425, 597
AclWI	GGATC	1 cut(s)	592
AfaI	GTAC	2 cut(s)	155, 221
AgeI	ACCGGT	1 cut(s)	610
AgsI	TTSAA	1 cut(s)	270
AluBI	AGCT	4 cut(s)	196, 273, 350, 512
AluI	AGCT	4 cut(s)	196, 273, 350, 512
AlwI	GGATC	1 cut(s)	592
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	65, 83, 239
AsiGI	ACCGGT	1 cut(s)	610
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	2 cut(s)	564, 565
AsuHPI	GGTGA	3 cut(s)	50, 64, 292
AvaI	CYCGRG	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	203
BccI	CCATC	1 cut(s)	256
BcnI	CCSGG	2 cut(s)	564, 565
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	215
BisI	GCNGC	4 cut(s)	415, 418, 426, 598
BlsI	GCNGC	4 cut(s)	416, 419, 427, 599
BmcAI	AGTACT	2 cut(s)	155, 221
Bme1390I	CCNGG	2 cut(s)	564, 565
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	564, 565
BoxI	GACNNNNGTC	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	564, 565
BsaJI	CCNNGG	2 cut(s)	61, 563
BsaWI	WCCGGW	2 cut(s)	229, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bse118I	RCCGGY	2 cut(s)	550, 610
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	3 cut(s)	74, 92, 158
BseDI	CCNNGG	2 cut(s)	61, 563
BseGI	GGATG	1 cut(s)	294
BseMI	GCAATG	3 cut(s)	74, 92, 158
BseNI	ACTGG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	390, 425
Bsh1285I	CGRYCG	1 cut(s)	611
BshFI	GGCC	3 cut(s)	67, 85, 241
BshTI	ACCGGT	1 cut(s)	610
BsiEI	CGRYCG	1 cut(s)	611
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	4 cut(s)	230, 551, 564, 611
BsnI	GGCC	3 cut(s)	67, 85, 241
BsoBI	CYCGRG	1 cut(s)	563
Bsp143I	GATC	1 cut(s)	584
Bsp68I	TCGCGA	1 cut(s)	390
BspACI	CCGC	8 cut(s)	225, 288, 317, 342, 414, 417, 425, 597
BspANI	GGCC	3 cut(s)	67, 85, 241
BspFNI	CGCG	2 cut(s)	390, 425
BspMAI	CTGCAG	1 cut(s)	219
BspPI	GGATC	1 cut(s)	592
BsrBI	CCGCTC	1 cut(s)	597
BsrDI	GCAATG	3 cut(s)	74, 92, 158
BsrFI	RCCGGY	2 cut(s)	550, 610
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	2 cut(s)	550, 610
BssECI	CCNNGG	2 cut(s)	61, 563
BssMI	GATC	1 cut(s)	584
BssT1I	CCWWGG	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	552, 556
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	2 cut(s)	390, 425
BstKTI	GATC	1 cut(s)	587
BstMBI	GATC	1 cut(s)	584
BstMCI	CGRYCG	1 cut(s)	611
BstPAI	GACNNNNGTC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	562, 563
BstSFI	CTRYAG	1 cut(s)	215
BstUI	CGCG	2 cut(s)	390, 425
BstV2I	GAAGAC	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	67, 85, 241
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	294
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	552, 556
Cfr10I	RCCGGY	2 cut(s)	550, 610
Cfr13I	GGNCC	1 cut(s)	65
Cfr9I	CCCGGG	1 cut(s)	563
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	154, 220
CspAI	ACCGGT	1 cut(s)	610
CviQI	GTAC	2 cut(s)	154, 220
DpnI	GATC	1 cut(s)	586
DpnII	GATC	1 cut(s)	584
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
EciI	GGCGGA	2 cut(s)	277, 331
Eco130I	CCWWGG	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaiI	YATR	6 cut(s)	131, 396, 492, 501, 573, 616
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
Fnu4HI	GCNGC	4 cut(s)	415, 418, 426, 598
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	4 cut(s)	415, 418, 426, 598
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	4 cut(s)	415, 418, 426, 598
HaeIII	GGCC	3 cut(s)	67, 85, 241
HapII	CCGG	4 cut(s)	230, 551, 564, 611
HgaI	GACGC	1 cut(s)	494
HinfI	GANTC	2 cut(s)	55, 329
HpaII	CCGG	4 cut(s)	230, 551, 564, 611
HphI	GGTGA	3 cut(s)	50, 64, 292
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	276, 348
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	5 cut(s)	79, 97, 163, 217, 494
HpySE526I	ACGT	1 cut(s)	353
KroI	GCCGGC	1 cut(s)	550
KroNI	GCCGGC	1 cut(s)	552
Kzo9I	GATC	1 cut(s)	584
LmnI	GCTCC	1 cut(s)	594
LpnPI	CCDG	6 cut(s)	35, 164, 243, 522, 564, 577
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	586
MbiI	CCGCTC	1 cut(s)	597
MboI	GATC	1 cut(s)	584
MboII	GAAGA	2 cut(s)	203, 470
MluCI	AATT	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	7 cut(s)	252, 293, 302, 308, 324, 375, 478
MroNI	GCCGGC	1 cut(s)	550
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	4 cut(s)	230, 551, 564, 611
MspR9I	CCNGG	2 cut(s)	564, 565
MvnI	CGCG	2 cut(s)	390, 425
NaeI	GCCGGC	1 cut(s)	552
NciI	CCSGG	2 cut(s)	564, 565
NdeII	GATC	1 cut(s)	584
NgoMIV	GCCGGC	1 cut(s)	550
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	52
NruI	TCGCGA	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	521
PdiI	GCCGGC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	610
PkrI	GCNGC	4 cut(s)	416, 419, 427, 599
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshAI	GACNNNNGTC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	219
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	2 cut(s)	155, 221
RsaNI	GTAC	2 cut(s)	154, 220
RseI	CAYNNNNRTG	1 cut(s)	576
SatI	GCNGC	4 cut(s)	415, 418, 426, 598
Sau3AI	GATC	1 cut(s)	584
Sau96I	GGNCC	1 cut(s)	65
ScaI	AGTACT	2 cut(s)	155, 221
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	564, 565
SetI	ASST	9 cut(s)	63, 198, 275, 316, 340, 352, 356, 499, 514
SfcI	CTRYAG	1 cut(s)	215
SmaI	CCCGGG	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	8 cut(s)	225, 288, 317, 342, 414, 417, 425, 597
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	562, 563
StyI	CCWWGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	2 cut(s)	441, 456
TasI	AATT	1 cut(s)	186
TatI	WGTACW	2 cut(s)	153, 219
TauI	GCSGC	4 cut(s)	417, 420, 428, 600
TfiI	GAWTC	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	95, 560
TspMI	CCCGGG	1 cut(s)	563
XmaI	CCCGGG	1 cut(s)	563
XspI	CTAG	1 cut(s)	429
ZrmI	AGTACT	2 cut(s)	155, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.