Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005394

Physical Location & Seq

Genomic Coordinates Forward (+)

49465288 .. 49466572

Gene Structure 1285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCCTCCACCATCGCCAACTCTCTCTCCTTCAAGCTCGGCGTTCCTCTCCGCCCTCATCCTCACCCCACTCACACCTCCGCTTCACTCGGATTCACAACCTTCCGTCGAAGCTACGTCGTTTCGTCCTCTCGCTTTCGCCAATCAAAACCGCGAGATGCACAACCTCAAGATTGCCGAGAGAAAATAGGAGGAAACCTACACGGTGTTCATTATATCCGGGATGTTGCCGATGCTAATGCACTTATATCATCGTTGGAGAAAGCACGAGAAGGTGGTCATTGTCGGTGGTGGTTATATTGGTATGGAGGTTGCTGCAGCAGCGATGCGGTTGGAAACTTGATACAACAATCATATTTCCAGAGAACCATCTTATGTCAAGACTGTTTACTCCTTCACTTGCCCGAGAGATATGAAGAATTCTACAAAGAGAATGGTGTTAAATTCTTAAAGGGTAACTCCCTAAAGAATATAGAAGCCGGTTCCAATGGACGTGTAACTCATGTTAAGCTTAAAGATGGATCTAGTATAGAAGCAGATGCGGTAATTGTTGGTATAGGAGCAAAACCCGCTGTCGGTCCTTTTGAAAGAGTGGGTTTAGATTCCAGTGTTGGTGGTATACAGGTTGATGGTCTGTTCCGGACAAGTGTACCTGGAATCTTTGCGATTGGTGATGTTGCAGCATTCCCATTGAAGATCTACAATCGTATAGCACGGGTGGAACATGTAGATCATGCTCGTCGATCTGCCCGCATTGCATTAAAGCTCTACCGACTGCACAAACTCACACATATGATTATCTTCCATCTTTCTACTCGAGGGTATTTGAGTATGAAGGCAGCCCGAGGAAAATATGGTGGCAATTTTATGGGGACAATGTTGGAGAGACAGTTGAAGTTGGGAATTTTGATCCTAAGATTGCAACTTTCCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010035 GO:0010038 GO:0010319 GO:0017076 GO:0030554 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

311

Amino Acids

34.51

Weight (kDa)

9.85

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	136 - 249	1.1e-20	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63940 AT1G63940 AT1G63940 AT1G63940
fragaria_vesca	FvH4_5g03130 FvH4_5g03130 FvH4_5g03130
malus_domestica	MD14G1111300.v1.1
prunus_persica	Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1
pyrus_communis	pycom14g10610
rosa_chinensis	RchiOBHm_Chr7g0196651
rosa_laevigata	RLG00000004000
rosa_multiflora	Rmu_sc0006080.1_g000012
rosa_roxburghii	Rroxscaffold_3G00231660 Rroxscaffold_3G00259130 Rroxscaffold_4G00330440 Rroxscaffold_5G00367630 Rroxscaffold_5G00367640 Rroxscaffold_6G00417800
rosa_rugosa	Rorug07G0035700
rosa_samantha	Rh7AG159400 Rh7BG161400 Rh7CG167800 Rh7DG160700
rosa_wichuraiana	Rw7G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	619
AccII	CGCG	1 cut(s)	154
AccIII	TCCGGA	2 cut(s)	639, 929
AciI	CCGC	7 cut(s)	52, 81, 152, 329, 542, 570, 751
AclWI	GGATC	2 cut(s)	529, 904
AcsI	RAATTY	3 cut(s)	419, 443, 903
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	1 cut(s)	575
AflIII	ACRYGT	2 cut(s)	493, 724
AgsI	TTSAA	4 cut(s)	34, 587, 694, 895
AjiI	CACGTC	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	4 cut(s)	37, 114, 511, 766
AluI	AGCT	4 cut(s)	37, 114, 511, 766
Alw26I	GTCTC	1 cut(s)	880
AlwI	GGATC	2 cut(s)	529, 904
Ama87I	CYCGRG	3 cut(s)	404, 816, 843
Aor13HI	TCCGGA	2 cut(s)	639, 929
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	315, 318, 321, 680, 839
ApoI	RAATTY	3 cut(s)	419, 443, 903
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	56, 683
AvaI	CYCGRG	3 cut(s)	404, 816, 843
AvaII	GGWCC	1 cut(s)	578
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	5 cut(s)	302, 330, 333, 692, 851
BccI	CCATC	5 cut(s)	20, 377, 512, 623, 813
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	880
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	316
BglII	AGATCT	1 cut(s)	696
BisI	GCNGC	5 cut(s)	316, 319, 322, 681, 840
BlsI	GCNGC	5 cut(s)	317, 320, 323, 682, 841
Bme1390I	CCNGG	2 cut(s)	221, 654
Bme18I	GGWCC	1 cut(s)	578
BmeT110I	CYCGRG	3 cut(s)	404, 816, 843
BmgBI	CACGTC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	2 cut(s)	221, 654
BmsI	GCATC	4 cut(s)	148, 223, 316, 529
BpuEI	CTTGAG	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	844
BsaWI	WCCGGW	2 cut(s)	639, 929
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 875, 905
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	753
BseAI	TCCGGA	2 cut(s)	639, 929
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	844
BseGI	GGATG	2 cut(s)	58, 229
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMI	GCAATG	1 cut(s)	753
BseNI	ACTGG	1 cut(s)	606
BseXI	GCAGC	5 cut(s)	302, 330, 333, 692, 851
BsgI	GTGCAG	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	3 cut(s)	404, 816, 843
BsiSI	CCGG	4 cut(s)	220, 480, 640, 930
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	1 cut(s)	880
BsmFI	GGGAC	1 cut(s)	886
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	3 cut(s)	404, 816, 843
Bsp13I	TCCGGA	2 cut(s)	639, 929
Bsp143I	GATC	5 cut(s)	521, 696, 730, 743, 909
BspACI	CCGC	7 cut(s)	52, 81, 152, 329, 542, 570, 751
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	2 cut(s)	639, 929
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	484
BspMAI	CTGCAG	1 cut(s)	320
BspPI	GGATC	2 cut(s)	529, 904
BsrDI	GCAATG	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	844
BssMI	GATC	5 cut(s)	521, 696, 730, 743, 909
BssNAI	GTATAC	1 cut(s)	620
BssSI	CACGAG	1 cut(s)	267
Bst1107I	GTATAC	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	206, 386, 891
BstC8I	GCNNGC	1 cut(s)	751
BstDEI	CTNAG	1 cut(s)	914
BstF5I	GGATG	2 cut(s)	58, 229
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	5 cut(s)	524, 699, 733, 746, 912
BstMAI	GTCTC	1 cut(s)	880
BstMBI	GATC	5 cut(s)	521, 696, 730, 743, 909
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 569, 755
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	2 cut(s)	219, 652
BstSFI	CTRYAG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	5 cut(s)	302, 330, 333, 692, 851
BstX2I	RGATCY	2 cut(s)	521, 696
BstYI	RGATCY	2 cut(s)	521, 696
BstZ17I	GTATAC	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	494
BtsCI	GGATG	2 cut(s)	58, 229
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	751
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	650
CviAII	CATG	3 cut(s)	503, 725, 734
CviJI	RGCY	7 cut(s)	5, 37, 114, 479, 511, 766, 842
CviKI_1	RGCY	7 cut(s)	5, 37, 114, 479, 511, 766, 842
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	1 cut(s)	914
DpnI	GATC	5 cut(s)	523, 698, 732, 745, 911
DpnII	GATC	5 cut(s)	521, 696, 730, 743, 909
EciI	GGCGGA	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	578
Eco88I	CYCGRG	3 cut(s)	404, 816, 843
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	652
FaeI	CATG	3 cut(s)	506, 728, 737
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	3 cut(s)	502, 724, 733
FauI	CCCGC	2 cut(s)	577, 758
FauNDI	CATATG	1 cut(s)	792
FblI	GTMKAC	1 cut(s)	619
Fnu4HI	GCNGC	5 cut(s)	316, 319, 322, 681, 840
FokI	GGATG	2 cut(s)	45, 236
Fsp4HI	GCNGC	5 cut(s)	316, 319, 322, 681, 840
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	5 cut(s)	316, 319, 322, 681, 840
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	220, 480, 640, 930
Hin1II	CATG	3 cut(s)	506, 728, 737
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	93, 602, 657
HpaII	CCGG	4 cut(s)	220, 480, 640, 930
HphI	GGTGA	2 cut(s)	56, 683
Hpy166II	GTNNAC	3 cut(s)	389, 620, 650
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	5 cut(s)	170, 361, 380, 640, 930
Hpy8I	GTNNAC	3 cut(s)	389, 620, 650
Hpy99I	CGWCG	3 cut(s)	111, 122, 744
HpyAV	CCTTC	5 cut(s)	40, 112, 266, 404, 829
HpyCH4III	ACNGT	3 cut(s)	206, 386, 891
HpyCH4IV	ACGT	2 cut(s)	117, 493
HpyCH4V	TGCA	7 cut(s)	161, 242, 318, 680, 758, 778, 922
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 569, 755
HpyF3I	CTNAG	1 cut(s)	914
HpySE526I	ACGT	2 cut(s)	117, 493
Hsp92II	CATG	3 cut(s)	506, 728, 737
Kpn2I	TCCGGA	2 cut(s)	639, 929
Kzo9I	GATC	5 cut(s)	521, 696, 730, 743, 909
LmnI	GCTCC	1 cut(s)	560
LpnPI	CCDG	8 cut(s)	233, 374, 493, 608, 619, 639, 653, 666
Lsp1109I	GCAGC	5 cut(s)	302, 330, 333, 692, 851
LweI	GCATC	4 cut(s)	148, 223, 316, 529
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	2 cut(s)	117, 493
MaeIII	GTNAC	2 cut(s)	455, 496
MalI	GATC	5 cut(s)	523, 698, 732, 745, 911
MboI	GATC	5 cut(s)	521, 696, 730, 743, 909
MboII	GAAGA	3 cut(s)	428, 706, 793
MflI	RGATCY	2 cut(s)	521, 696
MluCI	AATT	5 cut(s)	419, 443, 546, 862, 903
MmeI	TCCRAC	3 cut(s)	237, 313, 861
MroI	TCCGGA	2 cut(s)	639, 929
MseI	TTAA	5 cut(s)	441, 449, 507, 513, 761
MslI	CAYNNNNRTG	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	4 cut(s)	220, 480, 640, 930
MspR9I	CCNGG	2 cut(s)	221, 654
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	654
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	321, 569, 755
NciI	CCSGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	792
NdeII	GATC	5 cut(s)	521, 696, 730, 743, 909
NlaIII	CATG	3 cut(s)	506, 728, 737
NlaIV	GGNNCC	1 cut(s)	484
NmeAIII	GCCGAG	2 cut(s)	18, 203
NspI	RCATGY	1 cut(s)	728
PaeR7I	CTCGAG	1 cut(s)	816
PciI	ACATGT	1 cut(s)	724
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	3 cut(s)	93, 602, 657
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	317, 320, 323, 682, 841
PscI	ACATGT	1 cut(s)	724
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	578
PspXI	VCTCGAGB	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	521, 696
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	791
SaqAI	TTAA	5 cut(s)	441, 449, 507, 513, 761
SatI	GCNGC	5 cut(s)	316, 319, 322, 681, 840
Sau3AI	GATC	5 cut(s)	521, 696, 730, 743, 909
Sau96I	GGNCC	1 cut(s)	578
ScrFI	CCNGG	2 cut(s)	221, 654
SfaNI	GCATC	4 cut(s)	148, 223, 316, 529
SfcI	CTRYAG	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	816
SinI	GGWCC	1 cut(s)	578
SlaI	CTCGAG	1 cut(s)	816
SmiMI	CAYNNNNRTG	1 cut(s)	791
SmlI	CTYRAG	2 cut(s)	168, 816
SmoI	CTYRAG	2 cut(s)	168, 816
Sse9I	AATT	5 cut(s)	419, 443, 546, 862, 903
SsiI	CCGC	7 cut(s)	52, 81, 152, 329, 542, 570, 751
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	219, 652
TaaI	ACNGT	3 cut(s)	206, 386, 891
TaiI	ACGT	2 cut(s)	120, 496
TaqI	TCGA	3 cut(s)	109, 742, 817
TaqII	GACCGA	1 cut(s)	566
TasI	AATT	5 cut(s)	419, 443, 546, 862, 903
TfiI	GAWTC	3 cut(s)	93, 602, 657
Tru1I	TTAA	5 cut(s)	441, 449, 507, 513, 761
Tru9I	TTAA	5 cut(s)	441, 449, 507, 513, 761
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	5 cut(s)	315, 318, 321, 680, 839
TspDTI	ATGAA	3 cut(s)	200, 429, 848
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	3 cut(s)	419, 443, 903
XceI	RCATGY	1 cut(s)	728
XhoI	CTCGAG	1 cut(s)	816
XmiI	GTMKAC	1 cut(s)	619
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.