Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005394

Physical Location & Seq

Genomic Coordinates Reverse (-)

13402529 .. 13407445

Gene Structure 4917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G013950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTCTATGAAGATCCGGTTACAAATATTGATATCGAAAAGCAAACCCTGACTACAGATTCAGGGAAACTGCTTAAGTATGGATCACTTATCATTGCTACAGGATGCACAGCCTCAAGATTGCCAGAGAAAATAGGAGGAAACCTACCTGGTGTTCATTATATCCGGGATGTTGCTGATGCTGATGCACTTATATCATCGTTGGAGAAAGCACAGAAGGTGGTCATTGTCGGTGGTGGTTATATTGGTATGGAGGTTGCTGCAGCAGCTACTGGTTGGAAACTTGATACAACAATCATATTTCCAGAGAACCATCTTATGTCAAGACTGTTTACTCCTTCACTTGCTCGGAGATATGAAGAATTCTACAAAGAGAATGGTGTTAAATTCTTAAAGGGTAACTCCCTAAAGAATATAGAAGCTGGTTCCAATGGACGTGTAACTCATGTTAAGCTTGAAGATGGATCTAGTATAGAAGCAGACGCAGTAATTGTTGGTATAGGAGCAAAACCTGCTGTCGGTCCTTTTGAAATAGTGGGTTTAGATTCCAGTGTTGGTGGTATACAGGTTGATGGTCTGTTCCGGACAAGTGTACCTGGAATCTTTGCAGTTGGAGATGTTGCAGCATTCCCATTGAAGATCTACAATCGTATAGCACGGGTGGAACATGTAGATCATGCTCGTCGATCTGCCCAGCATTGCATTAAAGCTCTACTGACTGCCCAAACTCACACATATGATTATCTTCCATCTTTCTACTCGAGGGTATTTGAGTATGAAGGAAGCCCGAGGAAAATATGGTGGCAATTTTATGGGGACAATGTTGGAGAGACGGTTGAAGTTGGGAATTTTGATCCTAAGATTGCAACTTTCTGGATAGATTCTGGTAAACTGAAAGGTGTTCTCGTTGAAAGCGGAAGCCCTGAGGAATTCCAACTCCTTCCAAACATTGCAAGGAGCCAGCCTATTGTTGATAAAGCCAAGCTTCAGAATGCATCTTCAGTTGAGGAGGCACTAGCCATTGTTGGGTCATCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0010035 GO:0010038 GO:0010319 GO:0017076 GO:0030554 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

346

Amino Acids

37.58

Weight (kDa)

5.72

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	3 - 230	7.1e-47	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	7 - 205	8.2e-07	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	73 - 155	2.3e-18	Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C	PF21791	249 - 329	6.8e-18	Monodehydroascorbate reductase 3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63940 AT1G63940 AT1G63940 AT1G63940
fragaria_vesca	FvH4_5g03130 FvH4_5g03130 FvH4_5g03130
malus_domestica	MD14G1111300.v1.1
prunus_persica	Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1 Prupe.5G106000_v2.0.a1
pyrus_communis	pycom14g10610
rosa_chinensis	RchiOBHm_Chr7g0196651
rosa_laevigata	RLG00000004000
rosa_multiflora	Rmu_sc0006080.1_g000012
rosa_roxburghii	Rroxscaffold_3G00231660 Rroxscaffold_3G00259130 Rroxscaffold_4G00330440 Rroxscaffold_5G00367630 Rroxscaffold_5G00367640 Rroxscaffold_6G00417800
rosa_rugosa	Rorug07G0035700
rosa_samantha	Rh7AG159400 Rh7BG161400 Rh7CG167800 Rh7DG160700
rosa_wichuraiana	Rw7G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	562
AccIII	TCCGGA	1 cut(s)	582
AciI	CCGC	1 cut(s)	915
AclWI	GGATC	4 cut(s)	8, 91, 472, 848
AcsI	RAATTY	4 cut(s)	362, 386, 847, 929
AcuI	CTGAAG	2 cut(s)	971, 984
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	518, 1026
AflII	CTTAAG	1 cut(s)	74
AflIII	ACRYGT	2 cut(s)	436, 667
AgsI	TTSAA	5 cut(s)	458, 530, 637, 839, 911
AjiI	CACGTC	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	148, 595
AluBI	AGCT	5 cut(s)	269, 422, 454, 710, 985
AluI	AGCT	5 cut(s)	269, 422, 454, 710, 985
Alw26I	GTCTC	1 cut(s)	824
AlwI	GGATC	4 cut(s)	8, 91, 472, 848
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	2 cut(s)	760, 787
Aor13HI	TCCGGA	1 cut(s)	582
ApeKI	GCWGC	4 cut(s)	260, 263, 266, 623
ApoI	RAATTY	4 cut(s)	362, 386, 847, 929
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	167
AvaI	CYCGRG	2 cut(s)	760, 787
AvaII	GGWCC	1 cut(s)	521
AxyI	CCTNAGG	1 cut(s)	924
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BbvI	GCAGC	4 cut(s)	247, 275, 278, 635
BccI	CCATC	4 cut(s)	321, 455, 566, 757
BciT130I	CCWGG	2 cut(s)	150, 597
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	824
BfaI	CTAG	2 cut(s)	468, 1016
BfmI	CTRYAG	3 cut(s)	54, 99, 261
BfrI	CTTAAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	639
BisI	GCNGC	4 cut(s)	261, 264, 267, 624
BlsI	GCNGC	4 cut(s)	262, 265, 268, 625
Bme1390I	CCNGG	3 cut(s)	150, 167, 597
Bme18I	GGWCC	1 cut(s)	521
BmeT110I	CYCGRG	2 cut(s)	760, 787
BmgBI	CACGTC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	427, 959
BmrFI	CCNGG	3 cut(s)	150, 167, 597
BmsI	GCATC	4 cut(s)	95, 169, 175, 1004
BpuEI	CTTGAG	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	788
BsaWI	WCCGGW	2 cut(s)	16, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 1026
Bse1I	ACTGG	2 cut(s)	277, 549
Bse21I	CCTNAGG	1 cut(s)	924
Bse3DI	GCAATG	3 cut(s)	93, 697, 948
BseAI	TCCGGA	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	150, 597
BseDI	CCNNGG	1 cut(s)	788
BseGI	GGATG	2 cut(s)	110, 175
BseLI	CCNNNNNNNGG	2 cut(s)	518, 1026
BseMI	GCAATG	3 cut(s)	93, 697, 948
BseMII	CTCAG	1 cut(s)	915
BseNI	ACTGG	2 cut(s)	277, 549
BseRI	GAGGAG	1 cut(s)	1022
BseXI	GCAGC	4 cut(s)	247, 275, 278, 635
BseYI	CCCAGC	1 cut(s)	693
BsiHKCI	CYCGRG	2 cut(s)	760, 787
BsiSI	CCGG	3 cut(s)	17, 166, 583
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	2 cut(s)	518, 1026
BsmAI	GTCTC	1 cut(s)	824
BsmBI	CGTCTC	1 cut(s)	824
BsmFI	GGGAC	1 cut(s)	830
BsmI	GAATGC	2 cut(s)	626, 997
BsoBI	CYCGRG	2 cut(s)	760, 787
Bsp13I	TCCGGA	1 cut(s)	582
Bsp143I	GATC	7 cut(s)	13, 83, 464, 639, 673, 686, 853
BspACI	CCGC	1 cut(s)	915
BspCNI	CTCAG	1 cut(s)	916
BspEI	TCCGGA	1 cut(s)	582
BspLI	GGNNCC	2 cut(s)	427, 959
BspMAI	CTGCAG	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	4 cut(s)	8, 91, 472, 848
BspTI	CTTAAG	1 cut(s)	74
BsrDI	GCAATG	3 cut(s)	93, 697, 948
BsrI	ACTGG	2 cut(s)	277, 549
BssECI	CCNNGG	1 cut(s)	788
BssMI	GATC	7 cut(s)	13, 83, 464, 639, 673, 686, 853
BssNAI	GTATAC	1 cut(s)	563
Bst1107I	GTATAC	1 cut(s)	563
Bst2UI	CCWGG	2 cut(s)	150, 597
Bst4CI	ACNGT	2 cut(s)	330, 835
BstAFI	CTTAAG	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	962
BstDEI	CTNAG	2 cut(s)	858, 924
BstF5I	GGATG	2 cut(s)	110, 175
BstKTI	GATC	7 cut(s)	16, 86, 467, 642, 676, 689, 856
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	7 cut(s)	13, 83, 464, 639, 673, 686, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 512
BstNI	CCWGG	2 cut(s)	150, 597
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	148, 165, 595
BstSFI	CTRYAG	3 cut(s)	54, 99, 261
BstV1I	GCAGC	4 cut(s)	247, 275, 278, 635
BstX2I	RGATCY	3 cut(s)	13, 464, 639
BstYI	RGATCY	3 cut(s)	13, 464, 639
BstZ17I	GTATAC	1 cut(s)	563
Bsu36I	CCTNAGG	1 cut(s)	924
BtrI	CACGTC	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	110, 175
BtsIMutI	CAGTG	1 cut(s)	556
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	962
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	491
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	3 cut(s)	446, 668, 677
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	2 cut(s)	858, 924
DpnI	GATC	7 cut(s)	15, 85, 466, 641, 675, 688, 855
DpnII	GATC	7 cut(s)	13, 83, 464, 639, 673, 686, 853
Eco32I	GATATC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	971, 984
Eco81I	CCTNAGG	1 cut(s)	924
Eco88I	CYCGRG	2 cut(s)	760, 787
EcoRI	GAATTC	2 cut(s)	362, 929
EcoRII	CCWGG	2 cut(s)	148, 595
EcoRV	GATATC	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	997
Esp3I	CGTCTC	1 cut(s)	824
FaeI	CATG	3 cut(s)	449, 671, 680
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	3 cut(s)	445, 667, 676
FauNDI	CATATG	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	4 cut(s)	261, 264, 267, 624
FokI	GGATG	2 cut(s)	117, 182
Fsp4HI	GCNGC	4 cut(s)	261, 264, 267, 624
FspBI	CTAG	2 cut(s)	468, 1016
GluI	GCNGC	4 cut(s)	261, 264, 267, 624
GsaI	CCCAGC	1 cut(s)	697
HapII	CCGG	3 cut(s)	17, 166, 583
HgaI	GACGC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	449, 671, 680
HindIII	AAGCTT	2 cut(s)	452, 983
HinfI	GANTC	4 cut(s)	59, 545, 600, 881
HpaII	CCGG	3 cut(s)	17, 166, 583
Hpy166II	GTNNAC	4 cut(s)	333, 563, 593, 890
Hpy188I	TCNGA	2 cut(s)	351, 990
Hpy188III	TCNNGA	5 cut(s)	117, 305, 324, 583, 874
Hpy8I	GTNNAC	4 cut(s)	333, 563, 593, 890
Hpy99I	CGWCG	1 cut(s)	687
HpyAV	CCTTC	4 cut(s)	211, 348, 773, 950
HpyCH4III	ACNGT	2 cut(s)	330, 835
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	9 cut(s)	108, 188, 263, 608, 623, 702, 866, 953, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 512
HpyF3I	CTNAG	2 cut(s)	858, 924
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	3 cut(s)	449, 671, 680
Kpn2I	TCCGGA	1 cut(s)	582
Kzo9I	GATC	7 cut(s)	13, 83, 464, 639, 673, 686, 853
LmnI	GCTCC	2 cut(s)	503, 957
Lsp1109I	GCAGC	4 cut(s)	247, 275, 278, 635
LweI	GCATC	4 cut(s)	95, 169, 175, 1004
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	2 cut(s)	468, 1016
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	3 cut(s)	19, 398, 439
MalI	GATC	7 cut(s)	15, 85, 466, 641, 675, 688, 855
MboI	GATC	7 cut(s)	13, 83, 464, 639, 673, 686, 853
MboII	GAAGA	6 cut(s)	23, 371, 470, 649, 737, 990
MflI	RGATCY	3 cut(s)	13, 464, 639
MluCI	AATT	6 cut(s)	362, 386, 489, 806, 847, 929
MmeI	TCCRAC	5 cut(s)	183, 257, 592, 805, 958
MnlI	CCTC	8 cut(s)	124, 131, 247, 756, 783, 919, 1000, 1003
Mph1103I	ATGCAT	1 cut(s)	997
MroI	TCCGGA	1 cut(s)	582
MseI	TTAA	5 cut(s)	75, 384, 392, 450, 705
MslI	CAYNNNNRTG	1 cut(s)	735
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	3 cut(s)	17, 166, 583
MspR9I	CCNGG	3 cut(s)	150, 167, 597
Mva1269I	GAATGC	2 cut(s)	626, 997
MvaI	CCWGG	2 cut(s)	150, 597
MwoI	GCNNNNNNNGC	2 cut(s)	266, 512
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	7 cut(s)	13, 83, 464, 639, 673, 686, 853
NlaIII	CATG	3 cut(s)	449, 671, 680
NlaIV	GGNNCC	2 cut(s)	427, 959
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	1 cut(s)	671
PaeR7I	CTCGAG	1 cut(s)	760
PciI	ACATGT	1 cut(s)	667
PctI	GAATGC	2 cut(s)	626, 997
PfeI	GAWTC	4 cut(s)	59, 545, 600, 881
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	4 cut(s)	262, 265, 268, 625
PscI	ACATGT	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	148, 595
PspFI	CCCAGC	1 cut(s)	693
PspGI	CCWGG	2 cut(s)	148, 595
PspN4I	GGNNCC	2 cut(s)	427, 959
PspPI	GGNCC	1 cut(s)	521
PspXI	VCTCGAGB	1 cut(s)	760
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	3 cut(s)	13, 464, 639
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	5 cut(s)	75, 384, 392, 450, 705
SatI	GCNGC	4 cut(s)	261, 264, 267, 624
Sau3AI	GATC	7 cut(s)	13, 83, 464, 639, 673, 686, 853
Sau96I	GGNCC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	150, 167, 597
SexAI	ACCWGGT	1 cut(s)	148
SfaNI	GCATC	4 cut(s)	95, 169, 175, 1004
SfcI	CTRYAG	3 cut(s)	54, 99, 261
Sfr274I	CTCGAG	1 cut(s)	760
SinI	GGWCC	1 cut(s)	521
SlaI	CTCGAG	1 cut(s)	760
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	3 cut(s)	74, 115, 760
SmoI	CTYRAG	3 cut(s)	74, 115, 760
Sse9I	AATT	6 cut(s)	362, 386, 489, 806, 847, 929
SsiI	CCGC	1 cut(s)	915
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	2 cut(s)	468, 1016
StyD4I	CCNGG	3 cut(s)	148, 165, 595
TaaI	ACNGT	2 cut(s)	330, 835
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	36, 685, 761
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	6 cut(s)	362, 386, 489, 806, 847, 929
TfiI	GAWTC	4 cut(s)	59, 545, 600, 881
Tru1I	TTAA	5 cut(s)	75, 384, 392, 450, 705
Tru9I	TTAA	5 cut(s)	75, 384, 392, 450, 705
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	4 cut(s)	260, 263, 266, 623
TspDTI	ATGAA	4 cut(s)	24, 146, 372, 792
TspRI	CASTG	1 cut(s)	556
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	4 cut(s)	362, 386, 847, 929
XceI	RCATGY	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	2 cut(s)	468, 1016
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.