Rroxscaffold_3G00259680

membrane-associated kinase regulator

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
54084112 .. 54085901
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259680.1

Sequence Viewer

Length: 1281 bp
ATGGAAGCTTTTAGCCTGCTCAAGTATTGGCGAGGTGGCGGCCTTGTTGCTTCCTCCGCTCCTCCTAATGGCCCTAACAATGTCACCTCCGCCGCCGCCGCCGCCGCCACCATCCTCACCGCCGTCGCTGAGAACAGCGACGAGAGTCATGAAACTGACGACGACGACGACGACGGACCTTTCTTCGACTTGGAGTTTGCCGTCCCTGACGAGGCTGAAGCCCACGAAGCCTCTGGAAGCAGCGACAGCACCACCAGCGGCGACGAGAGTGAGGTGGAAGTGCACCAAGATGGGGAAGATGATGAGTCTGATGATGATGACGTGGACGGTGAGGAGGGTGAGTTTAACTTCACTGTGTCTTCCGGGTCGAGCAATGACGGCACCGACCCGAATCTGTCGATGTCTCCCTCTGACGATTTGTTCTTCAAGGGTAAGCTGGTGCCGATTGAGCCTTCCTCCATTGTGTTCAACCCGTCCGAGCCGAACTCCAAGGCTCAATTCGCAGGGTCGCTGCTCAAGTCCGCCACCAAGTTCCGGGTCTTCATGTCGGGTCTCAAGAAATCCAAGTCCAATTCCAACGGCCCGGAAAACAAAACGGAACCTACAAACGGATCCGTACAAGAACAACATGAAAAACAAGAGAATAAGCAACAGAAGCAGGGGAAGCTTTTCACGGTGAAGTTGAAGGTGGAGGAAGTTCCCATTGTGTCCTTGTTCACCAGAGACAACAGCTCCAGAATCTCCACAAAGACCCAGAACCAGAAAACCCAGAGTTCCGAAGAAGCTGCTTCTGAGGAGAAGCGCTTTTCGAAAGAGGTAATGCAGAAGTACTTGAAAATGGTGAAGCCTCTCTACGTCCGCGTTTCGAAACGCTACGGCGAGAAGACGAGGCTCTCCGGTCAACTCAGCGTAAGCAGCCCGCAGCCGGCGGAGAAGAGCCAGGCGGAGGCTGAAGTTTCGGAACCGGCGGCGAGCAATGTGAAGAGTACTATGAAGCAGGGGAATATTCCGGCGGGTTTGAGAGTTGTTTGCAAGCACTTGGGGAAGAGCCGCTCGGCTTCTTCGGCTGTAGCCGCGGCTCCACCGGGAACTGTGCTGTCACAGAGGAGAGATGATTCGCTGCTGCAGCAGCAGGATGGGATCCAGAGCGCCATTCTCCATTGCAAGCGGTCATTCAATGCTTCCAGAGATTCCGATTCTACTCCGCTATCCCGGTCGGTGAGCGATTCCTGCAACGAGAAGGCGTCACGAAAACCGTCGGATCAAGGCGGAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

45.79

Weight (kDa)

4.9

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64080
fragaria_vesca FvH4_5g03470
malus_domestica MD06G1094800.v1.1 MD14G1115100.v1.1
prunus_persica Prupe.5G110000_v2.0.a1
pyrus_communis pycom06g09150
rosa_chinensis RchiOBHm_Chr7g0196191
rosa_laevigata RLG00000004053
rosa_multiflora Rmu_sc0007292.1_g000008
rosa_roxburghii Rroxscaffold_3G00259680
rosa_rugosa Rorug07G0032000
rosa_samantha Rh7AG157400 Rh7BG159100 Rh7CG163100 Rh7DG158400
rosa_wichuraiana Rw7G013460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 380, 439
AccBSI CCGCTC 2 cut(s) 59, 1053
AccII CGCG 2 cut(s) 861, 1076
AclWI GGATC 5 cut(s) 606, 619, 1135, 1148, 1269
AcuI CTGAAG 2 cut(s) 237, 972
AcyI GRCGYC 1 cut(s) 1244
AfaI GTAC 3 cut(s) 618, 830, 988
AfeI AGCGCT 1 cut(s) 803
AfiI CCNNNNNNNGG 7 cut(s) 68, 211, 292, 534, 608, 925, 946
AgsI TTSAA 5 cut(s) 427, 469, 685, 835, 1177
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 939
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AluBI AGCT 5 cut(s) 8, 436, 667, 732, 785
AluI AGCT 5 cut(s) 8, 436, 667, 732, 785
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 3 cut(s) 408, 557, 717
Alw44I GTGCAC 1 cut(s) 281
AlwI GGATC 5 cut(s) 606, 619, 1135, 1148, 1269
Aor51HI AGCGCT 1 cut(s) 803
AoxI GGCC 3 cut(s) 40, 70, 580
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 9 cut(s) 240, 511, 785, 915, 922, 1120, 1123, 1126, 1129
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp700I GAANNNNTTC 1 cut(s) 668
AspLEI GCGC 2 cut(s) 804, 1151
AspS9I GGNCC 3 cut(s) 71, 176, 581
AsuC2I CCSGG 5 cut(s) 364, 536, 584, 1086, 1213
AsuHPI GGTGA 8 cut(s) 76, 109, 341, 350, 688, 709, 853, 1231
AsuII TTCGAA 2 cut(s) 809, 866
AvaII GGWCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 285
BamHI GGATCC 2 cut(s) 611, 1140
BanI GGYRCC 2 cut(s) 380, 439
BarI GAAGNNNNNNTAC 2 cut(s) 836, 868
BbsI GAAGAC 3 cut(s) 351, 532, 890
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 9 cut(s) 252, 498, 772, 927, 934, 1107, 1110, 1138, 1141
BccI CCATC 3 cut(s) 119, 284, 1130
BceAI ACGGC 5 cut(s) 107, 185, 394, 595, 892
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 1 cut(s) 941
BcnI CCSGG 5 cut(s) 364, 536, 584, 1086, 1213
BcoDI GTCTC 3 cut(s) 408, 557, 717
BfmI CTRYAG 2 cut(s) 1068, 1124
BfoI RGCGCY 2 cut(s) 805, 1152
BmcAI AGTACT 2 cut(s) 830, 988
Bme1390I CCNGG 6 cut(s) 364, 536, 584, 941, 1086, 1213
Bme18I GGWCC 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 71, 176, 581
BmiI GGNNCC 7 cut(s) 382, 441, 600, 613, 963, 1080, 1142
BmrFI CCNGG 6 cut(s) 364, 536, 584, 941, 1086, 1213
BoxI GACNNNNGTC 1 cut(s) 144
BpiI GAAGAC 3 cut(s) 351, 532, 890
BplI GAGNNNNNCTC 4 cut(s) 440, 472, 470, 502
BpmI CTGGAG 1 cut(s) 718
Bpu14I TTCGAA 2 cut(s) 809, 866
BpuEI CTTGAG 3 cut(s) 5, 500, 539
BpuMI CCSGG 5 cut(s) 364, 536, 584, 1086, 1213
BsaHI GRCGYC 1 cut(s) 1244
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 489, 1074
BsaWI WCCGGW 1 cut(s) 896
BsaXI ACNNNNNCTCC 4 cut(s) 326, 356, 716, 746
Bsc4I CCNNNNNNNGG 7 cut(s) 68, 211, 292, 534, 608, 925, 946
Bse118I RCCGGY 2 cut(s) 925, 964
Bse3DI GCAATG 3 cut(s) 379, 982, 1159
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 2 cut(s) 489, 1074
BseGI GGATG 2 cut(s) 111, 1141
BseLI CCNNNNNNNGG 7 cut(s) 68, 211, 292, 534, 608, 925, 946
BseMI GCAATG 3 cut(s) 379, 982, 1159
BseMII CTCAG 3 cut(s) 120, 783, 919
BseRI GAGGAG 4 cut(s) 51, 347, 809, 1120
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 9 cut(s) 252, 498, 772, 927, 934, 1107, 1110, 1138, 1141
Bsh1236I CGCG 2 cut(s) 861, 1076
Bsh1285I CGRYCG 1 cut(s) 1217
BshFI GGCC 3 cut(s) 42, 72, 582
BshNI GGYRCC 2 cut(s) 380, 439
BsiEI CGRYCG 1 cut(s) 1217
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 9 cut(s) 363, 535, 584, 897, 926, 965, 1010, 1085, 1213
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 7 cut(s) 68, 211, 292, 534, 608, 925, 946
BsmAI GTCTC 3 cut(s) 408, 557, 717
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 3 cut(s) 42, 72, 582
Bso31I GGTCTC 1 cut(s) 557
Bsp119I TTCGAA 2 cut(s) 809, 866
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 611, 1140, 1261
BspANI GGCC 3 cut(s) 42, 72, 582
BspCNI CTCAG 3 cut(s) 121, 784, 918
BspFNI CGCG 2 cut(s) 861, 1076
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 7 cut(s) 382, 441, 600, 613, 963, 1080, 1142
BspMAI CTGCAG 1 cut(s) 1128
BspPI GGATC 5 cut(s) 606, 619, 1135, 1148, 1269
BspQI GCTCTTC 2 cut(s) 929, 1040
BspT104I TTCGAA 2 cut(s) 809, 866
BspT107I GGYRCC 2 cut(s) 380, 439
BspTNI GGTCTC 1 cut(s) 557
BsrBI CCGCTC 2 cut(s) 59, 1053
BsrDI GCAATG 3 cut(s) 379, 982, 1159
BsrFI RCCGGY 2 cut(s) 925, 964
BssAI RCCGGY 2 cut(s) 925, 964
BssECI CCNNGG 2 cut(s) 489, 1074
BssMI GATC 3 cut(s) 611, 1140, 1261
BssNI GRCGYC 1 cut(s) 1244
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 5 cut(s) 329, 355, 676, 1093, 1257
Bst6I CTCTTC 3 cut(s) 929, 977, 1040
BstACI GRCGYC 1 cut(s) 1244
BstBI TTCGAA 2 cut(s) 809, 866
BstC8I GCNNGC 6 cut(s) 17, 920, 927, 973, 1034, 1166
BstDEI CTNAG 3 cut(s) 129, 792, 905
BstDSI CCRYGG 1 cut(s) 1074
BstF5I GGATG 2 cut(s) 111, 1141
BstFNI CGCG 2 cut(s) 861, 1076
BstH2I RGCGCY 2 cut(s) 805, 1152
BstHHI GCGC 2 cut(s) 804, 1151
BstKTI GATC 3 cut(s) 614, 1143, 1264
BstMAI GTCTC 3 cut(s) 408, 557, 717
BstMBI GATC 3 cut(s) 611, 1140, 1261
BstMCI CGRYCG 1 cut(s) 1217
BstNI CCWGG 1 cut(s) 941
BstPAI GACNNNNGTC 1 cut(s) 144
BstSCI CCNGG 6 cut(s) 362, 534, 582, 939, 1084, 1211
BstSFI CTRYAG 2 cut(s) 1068, 1124
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 2 cut(s) 861, 1076
BstV1I GCAGC 9 cut(s) 252, 498, 772, 927, 934, 1107, 1110, 1138, 1141
BstV2I GAAGAC 3 cut(s) 351, 532, 890
BstX2I RGATCY 2 cut(s) 611, 1140
BstYI RGATCY 2 cut(s) 611, 1140
BsuRI GGCC 3 cut(s) 42, 72, 582
BtgI CCRYGG 1 cut(s) 1074
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 111, 1141
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 6 cut(s) 17, 920, 927, 973, 1034, 1166
CciI TCATGA 1 cut(s) 148
CfoI GCGC 2 cut(s) 804, 1151
Cfr10I RCCGGY 2 cut(s) 925, 964
Cfr13I GGNCC 3 cut(s) 71, 176, 581
Cfr42I CCGCGG 1 cut(s) 1077
CseI GACGC 1 cut(s) 1233
Csp6I GTAC 3 cut(s) 617, 829, 987
CviAII CATG 3 cut(s) 149, 544, 629
CviQI GTAC 3 cut(s) 617, 829, 987
DdeI CTNAG 3 cut(s) 129, 792, 905
DpnI GATC 3 cut(s) 613, 1142, 1263
DpnII GATC 3 cut(s) 611, 1140, 1261
Eam1104I CTCTTC 3 cut(s) 929, 977, 1040
EarI CTCTTC 3 cut(s) 929, 977, 1040
EciI GGCGGA 4 cut(s) 79, 511, 944, 959
Eco130I CCWWGG 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 176
Eco47III AGCGCT 1 cut(s) 803
Eco57I CTGAAG 2 cut(s) 237, 972
EcoRII CCWGG 1 cut(s) 939
EcoT14I CCWWGG 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 3 cut(s) 152, 547, 632
FaiI YATR 4 cut(s) 150, 545, 630, 992
FaqI GGGAC 1 cut(s) 188
FatI CATG 3 cut(s) 148, 543, 628
FauI CCCGC 2 cut(s) 927, 1006
FokI GGATG 2 cut(s) 98, 1148
GlaI GCGC 2 cut(s) 803, 1150
GsuI CTGGAG 1 cut(s) 718
HaeII RGCGCY 2 cut(s) 805, 1152
HaeIII GGCC 3 cut(s) 42, 72, 582
HapII CCGG 9 cut(s) 363, 535, 584, 897, 926, 965, 1010, 1085, 1213
HgaI GACGC 1 cut(s) 1233
HhaI GCGC 2 cut(s) 804, 1151
Hin1I GRCGYC 1 cut(s) 1244
Hin1II CATG 3 cut(s) 152, 547, 632
Hin6I GCGC 2 cut(s) 802, 1149
HinP1I GCGC 2 cut(s) 802, 1149
HincII GTYRAC 1 cut(s) 902
HindII GTYRAC 1 cut(s) 902
HindIII AAGCTT 2 cut(s) 6, 665
HinfI GANTC 8 cut(s) 145, 305, 391, 738, 1115, 1190, 1196, 1226
HpaII CCGG 9 cut(s) 363, 535, 584, 897, 926, 965, 1010, 1085, 1213
HphI GGTGA 8 cut(s) 76, 109, 341, 350, 688, 709, 853, 1231
Hpy166II GTNNAC 4 cut(s) 283, 325, 717, 902
Hpy188I TCNGA 8 cut(s) 310, 412, 478, 778, 793, 961, 1195, 1261
Hpy188III TCNNGA 7 cut(s) 149, 234, 556, 735, 1144, 1185, 1248
Hpy8I GTNNAC 4 cut(s) 283, 325, 717, 902
Hpy99I CGWCG 9 cut(s) 128, 143, 164, 167, 170, 173, 176, 266, 1261
HpyAV CCTTC 3 cut(s) 462, 679, 1234
HpyCH4III ACNGT 5 cut(s) 329, 355, 676, 1093, 1257
HpyCH4IV ACGT 2 cut(s) 321, 855
HpyCH4V TGCA 6 cut(s) 283, 823, 1032, 1126, 1164, 1233
HpyF3I CTNAG 3 cut(s) 129, 792, 905
HpySE526I ACGT 2 cut(s) 321, 855
Hsp92I GRCGYC 1 cut(s) 1244
Hsp92II CATG 3 cut(s) 152, 547, 632
HspAI GCGC 2 cut(s) 802, 1149
KroI GCCGGC 1 cut(s) 925
KroNI GCCGGC 1 cut(s) 927
KspI CCGCGG 1 cut(s) 1077
Kzo9I GATC 3 cut(s) 611, 1140, 1261
LguI GCTCTTC 2 cut(s) 929, 1040
LmnI GCTCC 3 cut(s) 64, 737, 1084
Lsp1109I GCAGC 9 cut(s) 252, 498, 772, 927, 934, 1107, 1110, 1138, 1141
MaeII ACGT 2 cut(s) 321, 855
MaeIII GTNAC 3 cut(s) 82, 1098, 1245
MalI GATC 3 cut(s) 613, 1142, 1263
MbiI CCGCTC 2 cut(s) 59, 1053
MboI GATC 3 cut(s) 611, 1140, 1261
MflI RGATCY 2 cut(s) 611, 1140
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 2 cut(s) 497, 571
MlyI GAGTC 2 cut(s) 154, 314
MmeI TCCRAC 2 cut(s) 600, 1239
MroNI GCCGGC 1 cut(s) 925
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 2 cut(s) 258, 1076
MspI CCGG 9 cut(s) 363, 535, 584, 897, 926, 965, 1010, 1085, 1213
MspR9I CCNGG 6 cut(s) 364, 536, 584, 941, 1086, 1213
MvaI CCWGG 1 cut(s) 941
MvnI CGCG 2 cut(s) 861, 1076
NaeI GCCGGC 1 cut(s) 927
NciI CCSGG 5 cut(s) 364, 536, 584, 1086, 1213
NdeII GATC 3 cut(s) 611, 1140, 1261
NgoMIV GCCGGC 1 cut(s) 925
NlaIII CATG 3 cut(s) 152, 547, 632
NlaIV GGNNCC 7 cut(s) 382, 441, 600, 613, 963, 1080, 1142
NmeAIII GCCGAG 1 cut(s) 1034
NmuCI GTSAC 3 cut(s) 82, 1098, 1245
NspV TTCGAA 2 cut(s) 809, 866
PagI TCATGA 1 cut(s) 148
PciSI GCTCTTC 2 cut(s) 929, 1040
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 168
PdiI GCCGGC 1 cut(s) 927
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 6 cut(s) 391, 738, 1115, 1190, 1196, 1226
PleI GAGTC 2 cut(s) 153, 313
PpsI GAGTC 2 cut(s) 153, 313
PshAI GACNNNNGTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 939
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 7 cut(s) 382, 441, 600, 613, 963, 1080, 1142
PspPI GGNCC 3 cut(s) 71, 176, 581
PstI CTGCAG 1 cut(s) 1128
PsuI RGATCY 2 cut(s) 611, 1140
RsaI GTAC 3 cut(s) 618, 830, 988
RsaNI GTAC 3 cut(s) 617, 829, 987
RseI CAYNNNNRTG 1 cut(s) 288
SacII CCGCGG 1 cut(s) 1077
SapI GCTCTTC 2 cut(s) 929, 1040
SaqAI TTAA 1 cut(s) 345
Sau3AI GATC 3 cut(s) 611, 1140, 1261
Sau96I GGNCC 3 cut(s) 71, 176, 581
ScaI AGTACT 2 cut(s) 830, 988
SchI GAGTC 2 cut(s) 154, 314
ScrFI CCNGG 6 cut(s) 364, 536, 584, 941, 1086, 1213
SduI GDGCHC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 1068, 1124
Sfr303I CCGCGG 1 cut(s) 1077
SfuI TTCGAA 2 cut(s) 809, 866
SgrBI CCGCGG 1 cut(s) 1077
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 3 cut(s) 20, 515, 554
SmoI CTYRAG 3 cut(s) 20, 515, 554
Sse9I AATT 2 cut(s) 497, 571
SspI AATATT 1 cut(s) 1006
StyD4I CCNGG 6 cut(s) 362, 534, 582, 939, 1084, 1211
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 5 cut(s) 329, 355, 676, 1093, 1257
TaiI ACGT 2 cut(s) 324, 858
TaqI TCGA 5 cut(s) 186, 368, 398, 809, 866
TasI AATT 2 cut(s) 497, 571
TatI WGTACW 2 cut(s) 828, 986
TfiI GAWTC 6 cut(s) 391, 738, 1115, 1190, 1196, 1226
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 3 cut(s) 82, 1098, 1245
TseI GCWGC 9 cut(s) 240, 511, 785, 915, 922, 1120, 1123, 1126, 1129
Tsp45I GTSAC 3 cut(s) 82, 1098, 1245
TspDTI ATGAA 4 cut(s) 165, 532, 645, 1007
TspGWI ACGGA 4 cut(s) 189, 604, 611, 624
TspRI CASTG 1 cut(s) 358
VneI GTGCAC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 668
ZrmI AGTACT 2 cut(s) 830, 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.