mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G25540 AT1G25540 |
| fragaria_vesca | FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 |
| malus_domestica | MD16G1046800.v1.1 MD16G1047200.v1.1 |
| prunus_persica | Prupe.1G306600_v2.0.a1 Prupe.1G306600_v2.0.a1 |
| pyrus_communis | pycom16g04110 |
| rosa_chinensis | RchiOBHm_Chr4g0435671 |
| rosa_laevigata | RLG00000006568 |
| rosa_multiflora | Rmu_sc0000051.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00376880 |
| rosa_rugosa | Rorug04G0287900 Rorug04G0288000 Rorug04G0288100 |
| rosa_samantha | Rh2AG659100 Rh4AG343000 Rh4BG351300 Rh4CG365900 Rh4DG345600 |
| rosa_wichuraiana | Rw4G029940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 290 |
| AatII | GACGTC | 1 cut(s) | 1505 |
| Acc36I | ACCTGC | 3 cut(s) | 290, 2902, 2988 |
| Acc65I | GGTACC | 1 cut(s) | 1379 |
| AccB1I | GGYRCC | 3 cut(s) | 1379, 2132, 2780 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 875, 1042, 2094 |
| AccI | GTMKAC | 2 cut(s) | 2299, 2607 |
| AccII | CGCG | 2 cut(s) | 990, 2080 |
| AccIII | TCCGGA | 1 cut(s) | 839 |
| AciI | CCGC | 6 cut(s) | 41, 629, 1004, 2121, 2342, 3138 |
| AclWI | GGATC | 6 cut(s) | 220, 650, 1027, 1749, 2339, 2889 |
| AcoI | YGGCCR | 4 cut(s) | 42, 1059, 1273, 1703 |
| AcsI | RAATTY | 6 cut(s) | 474, 709, 997, 1216, 2721, 2917 |
| AcuI | CTGAAG | 5 cut(s) | 363, 1119, 1176, 1911, 2426 |
| AcyI | GRCGYC | 2 cut(s) | 1502, 2133 |
| AdeI | CACNNNGTG | 2 cut(s) | 1457, 2232 |
| AfaI | GTAC | 8 cut(s) | 234, 751, 775, 1198, 1381, 2099, 2196, 2381 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 299, 875, 1042, 1415, 1884, 2094, 2321, 3113 |
| AflII | CTTAAG | 1 cut(s) | 2590 |
| AflIII | ACRYGT | 2 cut(s) | 988, 2652 |
| AgeI | ACCGGT | 2 cut(s) | 661, 1850 |
| AhlI | ACTAGT | 1 cut(s) | 3037 |
| AjnI | CCWGG | 7 cut(s) | 1285, 1414, 2029, 2182, 2263, 2601, 3019 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2399, 2431 |
| Alw21I | GWGCWC | 2 cut(s) | 1172, 1513 |
| Alw26I | GTCTC | 9 cut(s) | 76, 1037, 1428, 1618, 1679, 1974, 2209, 2884, 3111 |
| AlwI | GGATC | 6 cut(s) | 220, 650, 1027, 1749, 2339, 2889 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1682 |
| Ama87I | CYCGRG | 3 cut(s) | 645, 723, 2321 |
| Aor13HI | TCCGGA | 1 cut(s) | 839 |
| ApoI | RAATTY | 6 cut(s) | 474, 709, 997, 1216, 2721, 2917 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1030, 1062 |
| AsiGI | ACCGGT | 2 cut(s) | 661, 1850 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2259 |
| Asp718I | GGTACC | 1 cut(s) | 1379 |
| AspLEI | GCGC | 3 cut(s) | 639, 2082, 2135 |
| AspS9I | GGNCC | 9 cut(s) | 50, 721, 815, 1139, 1313, 2180, 2312, 2324, 2827 |
| AsuC2I | CCSGG | 7 cut(s) | 646, 647, 724, 725, 744, 2660, 2822 |
| AsuHPI | GGTGA | 9 cut(s) | 858, 890, 1117, 1867, 1901, 1907, 2110, 3010, 3091 |
| AvaI | CYCGRG | 3 cut(s) | 645, 723, 2321 |
| AvaII | GGWCC | 3 cut(s) | 1313, 2180, 2312 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1654, 1687 |
| BalI | TGGCCA | 3 cut(s) | 1061, 1275, 1705 |
| BanI | GGYRCC | 3 cut(s) | 1379, 2132, 2780 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2090, 2122 |
| Bbv12I | GWGCWC | 2 cut(s) | 1172, 1513 |
| BbvCI | CCTCAGC | 2 cut(s) | 537, 2144 |
| BccI | CCATC | 9 cut(s) | 53, 778, 844, 877, 1315, 2169, 2416, 2746, 2989 |
| BceAI | ACGGC | 7 cut(s) | 50, 54, 507, 1471, 1951, 1992, 2768 |
| BciT130I | CCWGG | 7 cut(s) | 1287, 1416, 2031, 2184, 2265, 2603, 3021 |
| BciVI | GTATCC | 1 cut(s) | 1655 |
| BclI | TGATCA | 1 cut(s) | 1590 |
| BcnI | CCSGG | 7 cut(s) | 646, 647, 724, 725, 744, 2660, 2822 |
| BcoDI | GTCTC | 9 cut(s) | 76, 1037, 1428, 1618, 1679, 1974, 2209, 2884, 3111 |
| BcuI | ACTAGT | 1 cut(s) | 3037 |
| BfmI | CTRYAG | 5 cut(s) | 463, 921, 1026, 1514, 1674 |
| BfoI | RGCGCY | 1 cut(s) | 2136 |
| BfrI | CTTAAG | 1 cut(s) | 2590 |
| BfuAI | ACCTGC | 3 cut(s) | 290, 2902, 2988 |
| BfuI | GTATCC | 1 cut(s) | 1655 |
| BmcAI | AGTACT | 1 cut(s) | 775 |
| Bme18I | GGWCC | 3 cut(s) | 1313, 2180, 2312 |
| BmeT110I | CYCGRG | 3 cut(s) | 645, 723, 2321 |
| BmgT120I | GGNCC | 9 cut(s) | 50, 721, 815, 1139, 1313, 2180, 2312, 2324, 2827 |
| BmiI | GGNNCC | 7 cut(s) | 1315, 1381, 2134, 2181, 2479, 2782, 2791 |
| BmrI | ACTGGG | 3 cut(s) | 1404, 2400, 2851 |
| BmuI | ACTGGG | 3 cut(s) | 1404, 2400, 2851 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2295 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1541, 1573 |
| BpmI | CTGGAG | 5 cut(s) | 441, 1035, 1398, 2730, 3042 |
| Bpu10I | CCTNAGC | 3 cut(s) | 295, 537, 2144 |
| BpuEI | CTTGAG | 2 cut(s) | 966, 2870 |
| BpuMI | CCSGG | 7 cut(s) | 646, 647, 724, 725, 744, 2660, 2822 |
| BsaBI | GATNNNNATC | 2 cut(s) | 261, 2468 |
| BsaHI | GRCGYC | 2 cut(s) | 1502, 2133 |
| BsaI | GGTCTC | 3 cut(s) | 1037, 2884, 3111 |
| BsaWI | WCCGGW | 4 cut(s) | 221, 661, 839, 1850 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 299, 875, 1042, 1415, 1884, 2094, 2321, 3113 |
| Bse118I | RCCGGY | 4 cut(s) | 661, 1850, 2135, 2968 |
| Bse3DI | GCAATG | 3 cut(s) | 412, 1803, 2904 |
| Bse8I | GATNNNNATC | 2 cut(s) | 261, 2468 |
| BseAI | TCCGGA | 1 cut(s) | 839 |
| BseBI | CCWGG | 7 cut(s) | 1287, 1416, 2031, 2184, 2265, 2603, 3021 |
| BseJI | GATNNNNATC | 2 cut(s) | 261, 2468 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 299, 875, 1042, 1415, 1884, 2094, 2321, 3113 |
| BseMI | GCAATG | 3 cut(s) | 412, 1803, 2904 |
| BseMII | CTCAG | 8 cut(s) | 528, 717, 1178, 1323, 1674, 1751, 1985, 2158 |
| BseRI | GAGGAG | 2 cut(s) | 1375, 2078 |
| BseYI | CCCAGC | 2 cut(s) | 2499, 2641 |
| BsgI | GTGCAG | 1 cut(s) | 1506 |
| Bsh1236I | CGCG | 2 cut(s) | 990, 2080 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2281 |
| BshNI | GGYRCC | 3 cut(s) | 1379, 2132, 2780 |
| BshTI | ACCGGT | 2 cut(s) | 661, 1850 |
| BsiEI | CGRYCG | 1 cut(s) | 2281 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1172, 1513 |
| BsiHKCI | CYCGRG | 3 cut(s) | 645, 723, 2321 |
| BslFI | GGGAC | 4 cut(s) | 726, 1411, 2200, 2539 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 299, 875, 1042, 1415, 1884, 2094, 2321, 3113 |
| BsmAI | GTCTC | 9 cut(s) | 76, 1037, 1428, 1618, 1679, 1974, 2209, 2884, 3111 |
| BsmBI | CGTCTC | 3 cut(s) | 76, 1679, 1974 |
| BsmFI | GGGAC | 4 cut(s) | 726, 1411, 2200, 2539 |
| BsmI | GAATGC | 2 cut(s) | 417, 2025 |
| Bso31I | GGTCTC | 3 cut(s) | 1037, 2884, 3111 |
| BsoBI | CYCGRG | 3 cut(s) | 645, 723, 2321 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1172, 1513 |
| Bsp13I | TCCGGA | 1 cut(s) | 839 |
| Bsp1407I | TGTACA | 1 cut(s) | 2379 |
| Bsp19I | CCATGG | 2 cut(s) | 2160, 2327 |
| BspACI | CCGC | 6 cut(s) | 41, 629, 1004, 2121, 2342, 3138 |
| BspCNI | CTCAG | 8 cut(s) | 529, 716, 1177, 1322, 1675, 1750, 1984, 2157 |
| BspEI | TCCGGA | 1 cut(s) | 839 |
| BspFNI | CGCG | 2 cut(s) | 990, 2080 |
| BspLI | GGNNCC | 7 cut(s) | 1315, 1381, 2134, 2181, 2479, 2782, 2791 |
| BspMAI | CTGCAG | 1 cut(s) | 1518 |
| BspMI | ACCTGC | 3 cut(s) | 290, 2902, 2988 |
| BspPI | GGATC | 6 cut(s) | 220, 650, 1027, 1749, 2339, 2889 |
| BspT107I | GGYRCC | 3 cut(s) | 1379, 2132, 2780 |
| BspTI | CTTAAG | 1 cut(s) | 2590 |
| BspTNI | GGTCTC | 3 cut(s) | 1037, 2884, 3111 |
| BsrDI | GCAATG | 3 cut(s) | 412, 1803, 2904 |
| BsrFI | RCCGGY | 4 cut(s) | 661, 1850, 2135, 2968 |
| BsrGI | TGTACA | 1 cut(s) | 2379 |
| BssAI | RCCGGY | 4 cut(s) | 661, 1850, 2135, 2968 |
| BssNI | GRCGYC | 2 cut(s) | 1502, 2133 |
| BssT1I | CCWWGG | 7 cut(s) | 1225, 1255, 1366, 2160, 2293, 2327, 2674 |
| Bst2UI | CCWGG | 7 cut(s) | 1287, 1416, 2031, 2184, 2265, 2603, 3021 |
| Bst4CI | ACNGT | 6 cut(s) | 367, 564, 778, 1437, 2116, 3211 |
| Bst6I | CTCTTC | 1 cut(s) | 485 |
| BstACI | GRCGYC | 2 cut(s) | 1502, 2133 |
| BstAFI | CTTAAG | 1 cut(s) | 2590 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1160 |
| BstAUI | TGTACA | 1 cut(s) | 2379 |
| BstC8I | GCNNGC | 4 cut(s) | 988, 1601, 1692, 2005 |
| BstDSI | CCRYGG | 2 cut(s) | 2160, 2327 |
| BstFNI | CGCG | 2 cut(s) | 990, 2080 |
| BstH2I | RGCGCY | 1 cut(s) | 2136 |
| BstHHI | GCGC | 3 cut(s) | 639, 2082, 2135 |
| BstMAI | GTCTC | 9 cut(s) | 76, 1037, 1428, 1618, 1679, 1974, 2209, 2884, 3111 |
| BstMCI | CGRYCG | 1 cut(s) | 2281 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 326, 800, 1160, 1919, 2344, 2705, 2789, 3050 |
| BstNI | CCWGG | 7 cut(s) | 1287, 1416, 2031, 2184, 2265, 2603, 3021 |
| BstNSI | RCATGY | 6 cut(s) | 1070, 1423, 1603, 2430, 2656, 2708 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2295 |
| BstSFI | CTRYAG | 5 cut(s) | 463, 921, 1026, 1514, 1674 |
| BstUI | CGCG | 2 cut(s) | 990, 2080 |
| BstX2I | RGATCY | 4 cut(s) | 212, 655, 1019, 2881 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2942 |
| BstYI | RGATCY | 4 cut(s) | 212, 655, 1019, 2881 |
| BsuI | GTATCC | 1 cut(s) | 1655 |
| BtgI | CCRYGG | 2 cut(s) | 2160, 2327 |
| BtsIMutI | CAGTG | 4 cut(s) | 569, 813, 2388, 3234 |
| BveI | ACCTGC | 3 cut(s) | 290, 2902, 2988 |
| Cac8I | GCNNGC | 4 cut(s) | 988, 1601, 1692, 2005 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1682 |
| CfoI | GCGC | 3 cut(s) | 639, 2082, 2135 |
| Cfr10I | RCCGGY | 4 cut(s) | 661, 1850, 2135, 2968 |
| Cfr13I | GGNCC | 9 cut(s) | 50, 721, 815, 1139, 1313, 2180, 2312, 2324, 2827 |
| Cfr9I | CCCGGG | 2 cut(s) | 645, 723 |
| CseI | GACGC | 1 cut(s) | 1696 |
| Csp6I | GTAC | 8 cut(s) | 233, 750, 774, 1197, 1380, 2098, 2195, 2380 |
| CspAI | ACCGGT | 2 cut(s) | 661, 1850 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 157, 192 |
| CviQI | GTAC | 8 cut(s) | 233, 750, 774, 1197, 1380, 2098, 2195, 2380 |
| DinI | GGCGCC | 1 cut(s) | 2134 |
| DraIII | CACNNNGTG | 2 cut(s) | 1457, 2232 |
| EaeI | YGGCCR | 4 cut(s) | 42, 1059, 1273, 1703 |
| Eam1104I | CTCTTC | 1 cut(s) | 485 |
| EarI | CTCTTC | 1 cut(s) | 485 |
| EciI | GGCGGA | 1 cut(s) | 3153 |
| Eco130I | CCWWGG | 7 cut(s) | 1225, 1255, 1366, 2160, 2293, 2327, 2674 |
| Eco147I | AGGCCT | 1 cut(s) | 2755 |
| Eco31I | GGTCTC | 3 cut(s) | 1037, 2884, 3111 |
| Eco32I | GATATC | 1 cut(s) | 1083 |
| Eco47I | GGWCC | 3 cut(s) | 1313, 2180, 2312 |
| Eco57I | CTGAAG | 5 cut(s) | 363, 1119, 1176, 1911, 2426 |
| Eco88I | CYCGRG | 3 cut(s) | 645, 723, 2321 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1139, 1313 |
| EcoRI | GAATTC | 1 cut(s) | 997 |
| EcoRII | CCWGG | 7 cut(s) | 1285, 1414, 2029, 2182, 2263, 2601, 3019 |
| EcoRV | GATATC | 1 cut(s) | 1083 |
| EcoT14I | CCWWGG | 7 cut(s) | 1225, 1255, 1366, 2160, 2293, 2327, 2674 |
| EcoT22I | ATGCAT | 3 cut(s) | 1068, 2626, 3244 |
| EgeI | GGCGCC | 1 cut(s) | 2134 |
| EheI | GGCGCC | 1 cut(s) | 2134 |
| ErhI | CCWWGG | 7 cut(s) | 1225, 1255, 1366, 2160, 2293, 2327, 2674 |
| Esp3I | CGTCTC | 3 cut(s) | 76, 1679, 1974 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 739, 771 |
| FaqI | GGGAC | 4 cut(s) | 726, 1411, 2200, 2539 |
| FauI | CCCGC | 1 cut(s) | 622 |
| FauNDI | CATATG | 1 cut(s) | 2155 |
| FbaI | TGATCA | 1 cut(s) | 1590 |
| FblI | GTMKAC | 2 cut(s) | 2299, 2607 |
| GlaI | GCGC | 3 cut(s) | 638, 2081, 2134 |
| GsaI | CCCAGC | 2 cut(s) | 2503, 2645 |
| GsuI | CTGGAG | 5 cut(s) | 441, 1035, 1398, 2730, 3042 |
| HaeII | RGCGCY | 1 cut(s) | 2136 |
| HgaI | GACGC | 1 cut(s) | 1696 |
| HhaI | GCGC | 3 cut(s) | 639, 2082, 2135 |
| Hin1I | GRCGYC | 2 cut(s) | 1502, 2133 |
| Hin6I | GCGC | 3 cut(s) | 637, 2080, 2133 |
| HinP1I | GCGC | 3 cut(s) | 637, 2080, 2133 |
| HincII | GTYRAC | 2 cut(s) | 2300, 2608 |
| HindII | GTYRAC | 2 cut(s) | 2300, 2608 |
| HindIII | AAGCTT | 2 cut(s) | 1838, 2001 |
| HinfI | GANTC | 9 cut(s) | 1294, 1345, 1405, 1570, 1801, 1900, 2743, 3067, 3096 |
| HphI | GGTGA | 9 cut(s) | 858, 890, 1117, 1867, 1901, 1907, 2110, 3010, 3091 |
| Hpy166II | GTNNAC | 3 cut(s) | 2300, 2380, 2608 |
| Hpy8I | GTNNAC | 3 cut(s) | 2300, 2380, 2608 |
| Hpy99I | CGWCG | 3 cut(s) | 71, 86, 2789 |
| HpyAV | CCTTC | 9 cut(s) | 26, 326, 1764, 2053, 2116, 2317, 2766, 3112, 3131 |
| HpyCH4III | ACNGT | 6 cut(s) | 367, 564, 778, 1437, 2116, 3211 |
| HpyCH4IV | ACGT | 3 cut(s) | 81, 949, 1502 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 326, 800, 1160, 1919, 2344, 2705, 2789, 3050 |
| HpySE526I | ACGT | 3 cut(s) | 81, 949, 1502 |
| Hsp92I | GRCGYC | 2 cut(s) | 1502, 2133 |
| HspAI | GCGC | 3 cut(s) | 637, 2080, 2133 |
| KasI | GGCGCC | 1 cut(s) | 2132 |
| Kpn2I | TCCGGA | 1 cut(s) | 839 |
| KpnI | GGTACC | 1 cut(s) | 1383 |
| Ksp22I | TGATCA | 1 cut(s) | 1590 |
| LmnI | GCTCC | 2 cut(s) | 799, 2789 |
| MaeII | ACGT | 3 cut(s) | 81, 949, 1502 |
| MboII | GAAGA | 8 cut(s) | 100, 502, 855, 864, 1014, 1092, 1125, 3124 |
| MfeI | CAATTG | 3 cut(s) | 324, 1945, 1961 |
| MflI | RGATCY | 4 cut(s) | 212, 655, 1019, 2881 |
| MhlI | GDGCHC | 2 cut(s) | 1172, 1513 |
| MlsI | TGGCCA | 3 cut(s) | 1061, 1275, 1705 |
| MluI | ACGCGT | 1 cut(s) | 988 |
| MluNI | TGGCCA | 3 cut(s) | 1061, 1275, 1705 |
| Mly113I | GGCGCC | 1 cut(s) | 2133 |
| MlyI | GAGTC | 4 cut(s) | 1303, 1339, 2737, 3105 |
| MmeI | TCCRAC | 5 cut(s) | 227, 848, 872, 2767, 3073 |
| Mox20I | TGGCCA | 3 cut(s) | 1061, 1275, 1705 |
| Mph1103I | ATGCAT | 3 cut(s) | 1068, 2626, 3244 |
| MroI | TCCGGA | 1 cut(s) | 839 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2259 |
| MscI | TGGCCA | 3 cut(s) | 1061, 1275, 1705 |
| MseI | TTAA | 7 cut(s) | 149, 734, 1844, 2351, 2591, 2921, 3265 |
| MslI | CAYNNNNRTG | 5 cut(s) | 106, 1340, 2123, 2256, 3185 |
| Msp20I | TGGCCA | 3 cut(s) | 1061, 1275, 1705 |
| MspA1I | CMGCKG | 1 cut(s) | 2645 |
| MspCI | CTTAAG | 1 cut(s) | 2590 |
| MunI | CAATTG | 3 cut(s) | 324, 1945, 1961 |
| Mva1269I | GAATGC | 2 cut(s) | 417, 2025 |
| MvaI | CCWGG | 7 cut(s) | 1287, 1416, 2031, 2184, 2265, 2603, 3021 |
| MvnI | CGCG | 2 cut(s) | 990, 2080 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 326, 800, 1160, 1919, 2344, 2705, 2789, 3050 |
| NarI | GGCGCC | 1 cut(s) | 2133 |
| NciI | CCSGG | 7 cut(s) | 646, 647, 724, 725, 744, 2660, 2822 |
| NcoI | CCATGG | 2 cut(s) | 2160, 2327 |
| NdeI | CATATG | 1 cut(s) | 2155 |
| NlaIV | GGNNCC | 7 cut(s) | 1315, 1381, 2134, 2181, 2479, 2782, 2791 |
| NmeAIII | GCCGAG | 1 cut(s) | 2108 |
| NsiI | ATGCAT | 3 cut(s) | 1068, 2626, 3244 |
| NspI | RCATGY | 6 cut(s) | 1070, 1423, 1603, 2430, 2656, 2708 |
| PaeI | GCATGC | 1 cut(s) | 1603 |
| PaqCI | CACCTGC | 1 cut(s) | 290 |
| PasI | CCCWGGG | 1 cut(s) | 2030 |
| PceI | AGGCCT | 1 cut(s) | 2755 |
| PciI | ACATGT | 1 cut(s) | 2652 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2278 |
| PctI | GAATGC | 2 cut(s) | 417, 2025 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2259 |
| PfeI | GAWTC | 5 cut(s) | 1405, 1570, 1801, 1900, 3067 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 875, 1042, 2094 |
| PfoI | TCCNGGA | 1 cut(s) | 742 |
| PinAI | ACCGGT | 2 cut(s) | 661, 1850 |
| PleI | GAGTC | 4 cut(s) | 1302, 1339, 2737, 3104 |
| PluTI | GGCGCC | 1 cut(s) | 2136 |
| PpsI | GAGTC | 4 cut(s) | 1302, 1339, 2737, 3104 |
| PpuMI | RGGWCCY | 1 cut(s) | 1313 |
| PscI | ACATGT | 1 cut(s) | 2652 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2295 |
| Psp5II | RGGWCCY | 1 cut(s) | 1313 |
| Psp6I | CCWGG | 7 cut(s) | 1285, 1414, 2029, 2182, 2263, 2601, 3019 |
| PspFI | CCCAGC | 2 cut(s) | 2499, 2641 |
| PspGI | CCWGG | 7 cut(s) | 1285, 1414, 2029, 2182, 2263, 2601, 3019 |
| PspN4I | GGNNCC | 7 cut(s) | 1315, 1381, 2134, 2181, 2479, 2782, 2791 |
| PspPI | GGNCC | 9 cut(s) | 50, 721, 815, 1139, 1313, 2180, 2312, 2324, 2827 |
| PspPPI | RGGWCCY | 1 cut(s) | 1313 |
| PstI | CTGCAG | 1 cut(s) | 1518 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1682 |
| PsuI | RGATCY | 4 cut(s) | 212, 655, 1019, 2881 |
| PvuII | CAGCTG | 1 cut(s) | 2645 |
| RsaI | GTAC | 8 cut(s) | 234, 751, 775, 1198, 1381, 2099, 2196, 2381 |
| RsaNI | GTAC | 8 cut(s) | 233, 750, 774, 1197, 1380, 2098, 2195, 2380 |
| RseI | CAYNNNNRTG | 5 cut(s) | 106, 1340, 2123, 2256, 3185 |
| SalI | GTCGAC | 2 cut(s) | 2298, 2606 |
| SaqAI | TTAA | 7 cut(s) | 149, 734, 1844, 2351, 2591, 2921, 3265 |
| Sau96I | GGNCC | 9 cut(s) | 50, 721, 815, 1139, 1313, 2180, 2312, 2324, 2827 |
| ScaI | AGTACT | 1 cut(s) | 775 |
| SchI | GAGTC | 4 cut(s) | 1303, 1339, 2737, 3105 |
| SduI | GDGCHC | 2 cut(s) | 1172, 1513 |
| SfcI | CTRYAG | 5 cut(s) | 463, 921, 1026, 1514, 1674 |
| SfoI | GGCGCC | 1 cut(s) | 2134 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2135 |
| SinI | GGWCC | 3 cut(s) | 1313, 2180, 2312 |
| SmaI | CCCGGG | 2 cut(s) | 647, 725 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 106, 1340, 2123, 2256, 3185 |
| SmlI | CTYRAG | 3 cut(s) | 981, 2590, 2885 |
| SmoI | CTYRAG | 3 cut(s) | 981, 2590, 2885 |
| SpeI | ACTAGT | 1 cut(s) | 3037 |
| SphI | GCATGC | 1 cut(s) | 1603 |
| SrfI | GCCCGGGC | 1 cut(s) | 725 |
| SseBI | AGGCCT | 1 cut(s) | 2755 |
| SsiI | CCGC | 6 cut(s) | 41, 629, 1004, 2121, 2342, 3138 |
| SspDI | GGCGCC | 1 cut(s) | 2132 |
| SspI | AATATT | 1 cut(s) | 502 |
| StuI | AGGCCT | 1 cut(s) | 2755 |
| StyI | CCWWGG | 7 cut(s) | 1225, 1255, 1366, 2160, 2293, 2327, 2674 |
| TaaI | ACNGT | 6 cut(s) | 367, 564, 778, 1437, 2116, 3211 |
| TaiI | ACGT | 3 cut(s) | 84, 952, 1505 |
| TaqI | TCGA | 6 cut(s) | 84, 1085, 2277, 2299, 2607, 2741 |
| TaqII | GACCGA | 2 cut(s) | 2295, 2300 |
| TatI | WGTACW | 3 cut(s) | 749, 773, 2379 |
| TauI | GCSGC | 2 cut(s) | 44, 1007 |
| TfiI | GAWTC | 5 cut(s) | 1405, 1570, 1801, 1900, 3067 |
| Tru1I | TTAA | 7 cut(s) | 149, 734, 1844, 2351, 2591, 2921, 3265 |
| Tru9I | TTAA | 7 cut(s) | 149, 734, 1844, 2351, 2591, 2921, 3265 |
| TscAI | CASTG | 4 cut(s) | 569, 813, 2395, 3241 |
| TspGWI | ACGGA | 2 cut(s) | 20, 253 |
| TspMI | CCCGGG | 2 cut(s) | 645, 723 |
| TspRI | CASTG | 4 cut(s) | 569, 813, 2395, 3241 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 875, 1042, 2094 |
| Vha464I | CTTAAG | 1 cut(s) | 2590 |
| VpaK11BI | GGWCC | 3 cut(s) | 1313, 2180, 2312 |
| XapI | RAATTY | 6 cut(s) | 474, 709, 997, 1216, 2721, 2917 |
| XceI | RCATGY | 6 cut(s) | 1070, 1423, 1603, 2430, 2656, 2708 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1283 |
| XmaI | CCCGGG | 2 cut(s) | 645, 723 |
| XmiI | GTMKAC | 2 cut(s) | 2299, 2607 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2259 |
| ZraI | GACGTC | 1 cut(s) | 1503 |
| ZrmI | AGTACT | 1 cut(s) | 775 |
| Zsp2I | ATGCAT | 3 cut(s) | 1068, 2626, 3244 |