Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005569

Physical Location & Seq

Genomic Coordinates Forward (+)

46111228 .. 46113068

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGAGGCTCTACAATGGCTTCCTTGACATTCTAAAGATTCAGAAGTTTCGGAGAATCGTGTCATATACTGGGTTCTACTGCTTCACAGCGGTCTTGAGCTACGCTTACACAAGCAACACAACTAGAGCTGGGTTTTCCAGAGGTGACCAATTCTATGCGTCTTACCCGGCTGGAACTGAGCTCTTGACGGACCAAGCTAAGTTGTATAAAGCTGCCCTTGGTAATTGTTTTGAAACCGAAGAATGGGGTCCTATCGAGTACTGCATCATGGCTAAACACTTTGAGCGCCAAGGGAAAGGGCCTTATGCTTACCATGCCCAATACATGGCACATCTTCTGTCTCTTGGACAACTTGATGGAAGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med25_VWA

Protein Analysis

123

Amino Acids

14.01

Weight (kDa)

8.4

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25540 AT1G25540
fragaria_vesca	FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961 FvH4_4g27961
malus_domestica	MD16G1046800.v1.1 MD16G1047200.v1.1
prunus_persica	Prupe.1G306600_v2.0.a1 Prupe.1G306600_v2.0.a1
pyrus_communis	pycom16g04110
rosa_chinensis	RchiOBHm_Chr4g0435671
rosa_laevigata	RLG00000006568
rosa_multiflora	Rmu_sc0000051.1_g000012
rosa_roxburghii	Rroxscaffold_5G00376880
rosa_rugosa	Rorug04G0287900 Rorug04G0288000 Rorug04G0288100
rosa_samantha	Rh2AG659100 Rh4AG343000 Rh4BG351300 Rh4CG365900 Rh4DG345600
rosa_wichuraiana	Rw4G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	246, 328
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	5 cut(s)	102, 131, 184, 200, 215
AluI	AGCT	5 cut(s)	102, 131, 184, 200, 215
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	348
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	3 cut(s)	193, 251, 302
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	2 cut(s)	193, 251
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	126, 370
BfoI	RGCGCY	1 cut(s)	292
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	2 cut(s)	193, 251
BmgT120I	GGNCC	3 cut(s)	193, 251, 302
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	220, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 328
Bse1I	ACTGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	220, 292
BseLI	CCNNNNNNNGG	2 cut(s)	246, 328
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	246, 328
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	220, 292
BssT1I	CCWWGG	2 cut(s)	220, 292
BstDEI	CTNAG	2 cut(s)	180, 201
BstEII	GGTNACC	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	3 cut(s)	193, 251, 302
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	3 cut(s)	271, 317, 328
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	180, 201
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	220, 292
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	193, 251
Eco53kI	GAGCTC	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	184
EcoO109I	RGGNCCY	2 cut(s)	251, 302
EcoO65I	GGTNACC	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	220, 292
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	2 cut(s)	220, 292
FaeI	CATG	3 cut(s)	274, 320, 331
FaiI	YATR	8 cut(s)	67, 69, 159, 210, 272, 309, 318, 329
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	3 cut(s)	270, 316, 327
Fnu4HI	GCNGC	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	126, 370
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	274, 320, 331
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	40, 57
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	45, 54
Hpy188III	TCNNGA	3 cut(s)	97, 141, 187
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	180, 201
Hsp92II	CATG	3 cut(s)	274, 320, 331
HspAI	GCGC	1 cut(s)	289
LpnPI	CCDG	5 cut(s)	57, 117, 154, 159, 183
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	126, 370
MaeIII	GTNAC	1 cut(s)	146
MboII	GAAGA	2 cut(s)	254, 329
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	152, 226
MnlI	CCTC	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	170
NlaIII	CATG	3 cut(s)	274, 320, 331
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	40, 57
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	251
PspEI	GGTNACC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	3 cut(s)	193, 251, 302
PspPPI	RGGWCCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	186
SatI	GCNGC	1 cut(s)	216
Sau96I	GGNCC	3 cut(s)	193, 251, 302
ScaI	AGTACT	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	6 cut(s)	104, 133, 148, 186, 202, 217
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	2 cut(s)	193, 251
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	152, 226
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	2 cut(s)	126, 370
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	2 cut(s)	220, 292
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	152, 226
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	40, 57
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	2 cut(s)	193, 251
XspI	CTAG	2 cut(s)	126, 370
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.