Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014715

Physical Location & Seq

Genomic Coordinates Reverse (-)

21176322 .. 21187745

Gene Structure 11424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCTCGGGGGACCCTTAGCAGACATTTGTTCCATTGGCAACAAGAAAACCTGAGGCCTCTGGATTGGCGTACAAGGCTCAGAATTGCCTTGGATGTAGCAAATGGGGTGAATTACCTACACACCGCGAGCAGGGAGGCACTTGTCCACCGGGACTTGAAGCCCTCAAATATATTACTTGGAGATGATATGGAAGCTAAAATTGCGGATTTCGGGTTGGTCCATCCCATTCCCAAAGGAAAAAGCTCAACTTCAATGCCCCTAGCGGGAACACAGGGCTATTGGCCTTATGAATCTATTATGGATCGAAAGGTGTCCCCCAGAGGAGATGTTTACACCTTTGGGGTCATCTTAATGGAGCTCATTAGCGGCAGAAAGTCCATCATAGAGAACCTGCATAACGCTGAGAGATTTTTGCCTACCTGGTTTGCTGACAGGCTCAATATCAAGGACGAAAATGGTAAAATCATTCAGCTGGTTGACGTTTCTAGGCTTAGCGCCATTGTTGATCCTCCCATACTTTCAGATGGCACTTTGTCAACCATTGCTGTTGTGGCTGAGCTTGCACTGCACTGTGTTCACCCTAATCACCACAGAAGGCCCACTATGGCATATGTGTTTGGTGAACTCACTCGGCTGGTTGAGGGCTGGGAACCTCCAGAGCCTGAAGTATCACCTTTTGATAGGGTGGAAGGAGCAGCACCGACACTATCACAGATATTCAGGGAGATCGATGAAACTGATTTGGATGCATCTTCTAGTAGCGGTTTGGTGACAGGAAGGTCTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009555 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0030312 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

29.62

Weight (kDa)

5.99

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 136	9.2e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	11 - 204	2e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g14150
rosa_chinensis	RchiOBHm_Chr3g0492421
rosa_multiflora	Rmu_sc0002094.1_g000015 Rmu_sc0034092.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368510 Rroxscaffold_6G00399240
rosa_rugosa	Rorug03G0196400 Rorug04G0206100
rosa_samantha	Rh3CG280300 Rh3DG276400 Rh4AG262900 Rh4BG269000 Rh4CG281100 Rh4CG281200 Rh4CG288700 Rh4DG265300
rosa_wichuraiana	Rw3G022380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	781
Acc36I	ACCTGC	1 cut(s)	402
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	126, 206, 266, 369, 765
AclWI	GGATC	2 cut(s)	312, 503
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	132, 266
AgsI	TTSAA	2 cut(s)	160, 255
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	5 cut(s)	197, 246, 361, 475, 562
AluI	AGCT	5 cut(s)	197, 246, 361, 475, 562
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	312, 503
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	56, 284, 599
ApeKI	GCWGC	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	3 cut(s)	12, 220, 600
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	6 cut(s)	121, 572, 581, 635, 666, 784
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	12, 220
AxyI	CCTNAGG	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	710
BccI	CCATC	3 cut(s)	231, 389, 521
BciT130I	CCWGG	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	3 cut(s)	263, 489, 759
BfoI	RGCGCY	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	402
BisI	GCNGC	2 cut(s)	370, 699
BlpI	GCTNAGC	2 cut(s)	494, 558
BlsI	GCNGC	2 cut(s)	371, 700
Bme1390I	CCNGG	2 cut(s)	152, 424
Bme18I	GGWCC	2 cut(s)	12, 220
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	12, 220, 600
BmiI	GGNNCC	3 cut(s)	13, 14, 654
BmrFI	CCNGG	2 cut(s)	152, 424
BmsI	GCATC	2 cut(s)	739, 761
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	17
Bpu1102I	GCTNAGC	2 cut(s)	494, 558
BpuMI	CCSGG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	732
BsaJI	CCNNGG	2 cut(s)	5, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 266
Bse21I	CCTNAGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	424
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	5, 90
BseGI	GGATG	3 cut(s)	100, 223, 754
BseLI	CCNNNNNNNGG	2 cut(s)	132, 266
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	4 cut(s)	44, 94, 396, 549
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	710
BseYI	CCCAGC	1 cut(s)	648
BsgI	GTGCAG	1 cut(s)	554
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	58, 286, 601
BshVI	ATCGAT	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	3 cut(s)	25, 167, 301
BslI	CCNNNNNNNGG	2 cut(s)	132, 266
BsmFI	GGGAC	3 cut(s)	25, 167, 301
BsnI	GGCC	3 cut(s)	58, 286, 601
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	304, 508, 729
Bsp1720I	GCTNAGC	2 cut(s)	494, 558
BspACI	CCGC	5 cut(s)	126, 206, 266, 369, 765
BspANI	GGCC	3 cut(s)	58, 286, 601
BspCNI	CTCAG	4 cut(s)	45, 93, 397, 550
BspDI	ATCGAT	1 cut(s)	732
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	13, 14, 654
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	2 cut(s)	312, 503
BsrDI	GCAATG	1 cut(s)	543
BssECI	CCNNGG	2 cut(s)	5, 90
BssMI	GATC	3 cut(s)	304, 508, 729
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	130, 564
BstDEI	CTNAG	6 cut(s)	17, 53, 80, 405, 494, 558
BstF5I	GGATG	3 cut(s)	100, 223, 754
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	3 cut(s)	307, 511, 732
BstMBI	GATC	3 cut(s)	304, 508, 729
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 203, 554, 563, 568
BstNI	CCWGG	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	150, 422
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	710
Bsu15I	ATCGAT	1 cut(s)	732
Bsu36I	CCTNAGG	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	58, 286, 601
BsuTUI	ATCGAT	1 cut(s)	732
BtsCI	GGATG	3 cut(s)	100, 223, 754
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	566, 571
BveI	ACCTGC	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	130, 564
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	12, 220, 600
ClaI	ATCGAT	1 cut(s)	732
CsiI	ACCWGGT	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	72
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	6 cut(s)	17, 53, 80, 405, 494, 558
DpnI	GATC	3 cut(s)	306, 510, 731
DpnII	GATC	3 cut(s)	304, 508, 729
DrdI	GACNNNNNNGTC	1 cut(s)	781
DseDI	GACNNNNNNGTC	1 cut(s)	781
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	12, 220
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	754
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	90
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FaqI	GGGAC	3 cut(s)	25, 167, 301
FauI	CCCGC	1 cut(s)	259
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	2 cut(s)	370, 699
FokI	GGATG	3 cut(s)	107, 210, 761
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	370, 699
FspBI	CTAG	3 cut(s)	263, 489, 759
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	2 cut(s)	370, 699
GsaI	CCCAGC	1 cut(s)	652
GsuI	CTGGAG	1 cut(s)	642
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	3 cut(s)	58, 286, 601
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	500
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HincII	GTYRAC	2 cut(s)	481, 540
HindII	GTYRAC	2 cut(s)	481, 540
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	6 cut(s)	121, 572, 581, 635, 666, 784
Hpy166II	GTNNAC	6 cut(s)	148, 334, 481, 540, 580, 626
Hpy188I	TCNGA	2 cut(s)	83, 526
Hpy188III	TCNNGA	2 cut(s)	62, 659
Hpy8I	GTNNAC	6 cut(s)	148, 334, 481, 540, 580, 626
HpyAV	CCTTC	3 cut(s)	591, 686, 774
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	4 cut(s)	397, 566, 571, 752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 203, 554, 563, 568
HpyF3I	CTNAG	6 cut(s)	17, 53, 80, 405, 494, 558
HpySE526I	ACGT	1 cut(s)	483
HspAI	GCGC	1 cut(s)	498
KflI	GGGWCCC	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	304, 508, 729
LmnI	GCTCC	2 cut(s)	358, 695
Lsp1109I	GCAGC	1 cut(s)	710
LweI	GCATC	2 cut(s)	739, 761
MabI	ACCWGGT	1 cut(s)	422
MaeI	CTAG	3 cut(s)	263, 489, 759
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	3 cut(s)	306, 510, 731
MboI	GATC	3 cut(s)	304, 508, 729
MboII	GAAGA	1 cut(s)	747
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	84, 112, 201
MnlI	CCTC	9 cut(s)	15, 48, 69, 130, 175, 317, 522, 637, 666
Mph1103I	ATGCAT	1 cut(s)	754
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	152, 424
MvaI	CCWGG	1 cut(s)	424
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	5 cut(s)	76, 203, 554, 563, 568
NciI	CCSGG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	3 cut(s)	304, 508, 729
NlaIV	GGNNCC	3 cut(s)	13, 14, 654
NmeAIII	GCCGAG	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	772
NsiI	ATGCAT	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	371, 700
PpuMI	RGGWCCY	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	3 cut(s)	13, 14, 654
PspPI	GGNCC	3 cut(s)	12, 220, 600
PspPPI	RGGWCCY	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	665
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	2 cut(s)	370, 699
Sau3AI	GATC	3 cut(s)	304, 508, 729
Sau96I	GGNCC	3 cut(s)	12, 220, 600
ScrFI	CCNGG	2 cut(s)	152, 424
SduI	GDGCHC	1 cut(s)	363
SexAI	ACCWGGT	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	739, 761
SinI	GGWCC	2 cut(s)	12, 220
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	84, 112, 201
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	5 cut(s)	126, 206, 266, 369, 765
SspMI	CTAG	3 cut(s)	263, 489, 759
SstI	GAGCTC	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	2 cut(s)	150, 422
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	575
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	2 cut(s)	307, 732
TasI	AATT	3 cut(s)	84, 112, 201
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	2 cut(s)	573, 578
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	2 cut(s)	306, 750
TspRI	CASTG	2 cut(s)	573, 578
VpaK11BI	GGWCC	2 cut(s)	12, 220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XspI	CTAG	3 cut(s)	263, 489, 759
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.