Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014715

Physical Location & Seq

Genomic Coordinates Forward (+)

27383395 .. 27385005

Gene Structure 1611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGAACTGTGCCATTTGAAATGACAAAATTGCCCTACCTCAGATTACTGGATCTTTCCCATAACCATTTGAGTGGTCGATTACCAAAGTTTGAGCCGAAAGTTGTTGTGAGGGTATATGGAAACCAGGACTTAGATACAGATAGTGCCCCTTCCCCTACCCAAACCCAAACCCAAACCCATTCTCATGTCATAGTAAGTGGGTGTGTTGGCGGGCTTCTGTTGGTGTTAGCAACTGTTACTGGGCTTTATGCTTACCTGCACGTAAACAAAGAGGAGGACCCTGAAGAGAGTTTTGGTGACAGTCTTGAGAAGTTTTCTGTTGACACTTTGAGTAGGGCAACTGAGGATAGAAGGTCTGCTGCCGATGATTTCAAGGCCGAGATTACCTTGCTCTGTGGACTTCGGCATTGGAACTTGGTTGCTCTGCTTGGCTACTGTTGGGAGGAAAATGAAAAGTTGCTGGTTTACGAGTATATGCCTCGGGGGACCCTTAGCAGACATTTGTTCCATTGGCAACAAGAAAACTTGAGGCCTCTGGATTGGCCTACAAGGCTCAGAATTGCCTTGGATGTAGCAAATGGGGTAAATTACCTACACACCGCATGCAGGGAGGCACTTGTCCACCGGGACTTGAAGCCCTCAAATATATTACTTGGAGATGATATGGAAGCTAAAATTGCGGATTTCGGGTTGGTCCATCCCATTCCCAAAGGAAAAAGCTCAACTTTGATGCCCCTAGCGGGAACACAGGGCTACTGGCCTTATGAATCTATTATGGATCGAAAGGTGTCCCCCAGAGGAGATGTTTACACCTTTGGAGTCATCTTAATGGAGCTCATTAGCGGCAGAAAGTCCATCATAGAGAACCTGCATAATGCTGAGAGATTTTTGCCTACCTGGTTTGCTGACAGGCTCAATGTCAAGGACGAAAATGGTAAAATCATTCAGCTGGTTGACGTTTCTAGGCTTAGCGCCATTGTCGATCCTCCCATACTTTCAGATGGCACTTTGTCAACCATTGCTGTTGTGACTGAGCTTGCACTGCACTGTGTTCACCCTAATCACCACAGAAGGCCCACCATGGCATATGTGTTTGGTGAACTCACGCGGCTGGTTGAGGGCTGGGAACCTCCAGAGCCTGAAGTATCACCTTTTGATAGGGTGGAAGGAGAAGCACCGACACTATCACAGATATTCAGGGAGATCGATGAAACTGATTTGGATGCATCTTCTAGTAGCGGTTTGGTGACAGGAAGGTCTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009555 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0030312 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

423

Amino Acids

47.54

Weight (kDa)

5.45

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	117 - 295	7.7e-33	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	117 - 363	2.5e-30	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g14150
rosa_chinensis	RchiOBHm_Chr3g0492421
rosa_multiflora	Rmu_sc0002094.1_g000015 Rmu_sc0034092.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368510 Rroxscaffold_6G00399240
rosa_rugosa	Rorug03G0196400 Rorug04G0206100
rosa_samantha	Rh3CG280300 Rh3DG276400 Rh4AG262900 Rh4BG269000 Rh4CG281100 Rh4CG281200 Rh4CG288700 Rh4DG265300
rosa_wichuraiana	Rw3G022380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1258
Acc36I	ACCTGC	2 cut(s)	267, 879
AccII	CGCG	1 cut(s)	1111
AciI	CCGC	7 cut(s)	213, 603, 683, 743, 846, 1111, 1242
AclWI	GGATC	3 cut(s)	60, 789, 980
AcuI	CTGAAG	2 cut(s)	306, 1164
AfiI	CCNNNNNNNGG	2 cut(s)	609, 743
AgsI	TTSAA	3 cut(s)	20, 376, 637
AjnI	CCWGG	2 cut(s)	126, 899
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	5 cut(s)	674, 723, 838, 952, 1039
AluI	AGCT	5 cut(s)	674, 723, 838, 952, 1039
Alw21I	GWGCWC	1 cut(s)	840
AlwI	GGATC	3 cut(s)	60, 789, 980
AlwNI	CAGNNNCTG	1 cut(s)	1142
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	5 cut(s)	378, 533, 545, 761, 1076
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	977
AspS9I	GGNCC	4 cut(s)	280, 489, 697, 1077
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	6 cut(s)	311, 1049, 1058, 1112, 1143, 1261
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	3 cut(s)	280, 489, 697
BaeGI	GKGCMC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	840
Bbv12I	GWGCWC	1 cut(s)	840
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	3 cut(s)	708, 866, 998
BciT130I	CCWGG	2 cut(s)	128, 901
BcnI	CCSGG	1 cut(s)	629
BfaI	CTAG	3 cut(s)	740, 966, 1236
BfoI	RGCGCY	1 cut(s)	978
BfuAI	ACCTGC	2 cut(s)	267, 879
BglI	GCCNNNNNGGC	1 cut(s)	553
BisI	GCNGC	3 cut(s)	363, 847, 1112
BlpI	GCTNAGC	1 cut(s)	971
BlsI	GCNGC	3 cut(s)	364, 848, 1113
Bme1390I	CCNGG	3 cut(s)	128, 629, 901
Bme18I	GGWCC	3 cut(s)	280, 489, 697
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	4 cut(s)	280, 489, 697, 1077
BmiI	GGNNCC	4 cut(s)	282, 490, 491, 1131
BmrFI	CCNGG	3 cut(s)	128, 629, 901
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	723, 1216, 1238
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	1119
Bpu10I	CCTNAGC	1 cut(s)	494
Bpu1102I	GCTNAGC	1 cut(s)	971
BpuEI	CTTGAG	2 cut(s)	329, 550
BpuMI	CCSGG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	1209
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	482, 567, 1083
Bsc4I	CCNNNNNNNGG	2 cut(s)	609, 743
Bse1I	ACTGG	3 cut(s)	54, 247, 764
Bse3DI	GCAATG	1 cut(s)	1020
BseBI	CCWGG	2 cut(s)	128, 901
BseCI	ATCGAT	1 cut(s)	1209
BseDI	CCNNGG	3 cut(s)	482, 567, 1083
BseGI	GGATG	3 cut(s)	577, 700, 1231
BseLI	CCNNNNNNNGG	2 cut(s)	609, 743
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	5 cut(s)	55, 336, 571, 873, 1026
BseNI	ACTGG	3 cut(s)	54, 247, 764
BseRI	GAGGAG	2 cut(s)	290, 816
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	349
BseYI	CCCAGC	1 cut(s)	1125
BsgI	GTGCAG	2 cut(s)	245, 1031
Bsh1236I	CGCG	1 cut(s)	1111
BshFI	GGCC	5 cut(s)	380, 535, 547, 763, 1078
BshVI	ATCGAT	1 cut(s)	1209
BsiHKAI	GWGCWC	1 cut(s)	840
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	628
BslFI	GGGAC	3 cut(s)	502, 644, 778
BslI	CCNNNNNNNGG	2 cut(s)	609, 743
BsmFI	GGGAC	3 cut(s)	502, 644, 778
BsnI	GGCC	5 cut(s)	380, 535, 547, 763, 1078
BsoBI	CYCGRG	1 cut(s)	483
Bsp1286I	GDGCHC	2 cut(s)	151, 840
Bsp143I	GATC	4 cut(s)	52, 781, 985, 1206
Bsp1720I	GCTNAGC	1 cut(s)	971
Bsp19I	CCATGG	1 cut(s)	1083
BspACI	CCGC	7 cut(s)	213, 603, 683, 743, 846, 1111, 1242
BspANI	GGCC	5 cut(s)	380, 535, 547, 763, 1078
BspCNI	CTCAG	5 cut(s)	54, 337, 570, 874, 1027
BspDI	ATCGAT	1 cut(s)	1209
BspFNI	CGCG	1 cut(s)	1111
BspLI	GGNNCC	4 cut(s)	282, 490, 491, 1131
BspMI	ACCTGC	2 cut(s)	267, 879
BspPI	GGATC	3 cut(s)	60, 789, 980
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	3 cut(s)	54, 247, 764
BssECI	CCNNGG	3 cut(s)	482, 567, 1083
BssMI	GATC	4 cut(s)	52, 781, 985, 1206
BssT1I	CCWWGG	2 cut(s)	567, 1083
Bst2UI	CCWGG	2 cut(s)	128, 901
Bst4CI	ACNGT	5 cut(s)	10, 238, 305, 440, 1052
Bst6I	CTCTTC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	215, 607, 1041
BstDEI	CTNAG	8 cut(s)	41, 133, 345, 494, 557, 882, 971, 1035
BstDSI	CCRYGG	1 cut(s)	1083
BstF5I	GGATG	3 cut(s)	577, 700, 1231
BstFNI	CGCG	1 cut(s)	1111
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	1 cut(s)	977
BstKTI	GATC	4 cut(s)	55, 784, 988, 1209
BstMBI	GATC	4 cut(s)	52, 781, 985, 1206
BstMWI	GCNNNNNNNGC	3 cut(s)	553, 680, 1045
BstNI	CCWGG	2 cut(s)	128, 901
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	3 cut(s)	126, 627, 899
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	1111
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	1209
BsuRI	GGCC	5 cut(s)	380, 535, 547, 763, 1078
BsuTUI	ATCGAT	1 cut(s)	1209
BtgI	CCRYGG	1 cut(s)	1083
BtsCI	GGATG	3 cut(s)	577, 700, 1231
BtsI	GCAGTG	1 cut(s)	1043
BtsIMutI	CAGTG	2 cut(s)	1043, 1048
BveI	ACCTGC	2 cut(s)	267, 879
Cac8I	GCNNGC	3 cut(s)	215, 607, 1041
CaiI	CAGNNNCTG	1 cut(s)	1142
CfoI	GCGC	1 cut(s)	977
Cfr13I	GGNCC	4 cut(s)	280, 489, 697, 1077
ClaI	ATCGAT	1 cut(s)	1209
CsiI	ACCWGGT	1 cut(s)	899
CviAII	CATG	3 cut(s)	188, 606, 1084
DdeI	CTNAG	8 cut(s)	41, 133, 345, 494, 557, 882, 971, 1035
DpnI	GATC	4 cut(s)	54, 783, 987, 1208
DpnII	GATC	4 cut(s)	52, 781, 985, 1206
DrdI	GACNNNNNNGTC	1 cut(s)	1258
DseDI	GACNNNNNNGTC	1 cut(s)	1258
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	2 cut(s)	567, 1083
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	840
Eco47I	GGWCC	3 cut(s)	280, 489, 697
Eco53kI	GAGCTC	1 cut(s)	838
Eco57I	CTGAAG	2 cut(s)	306, 1164
Eco88I	CYCGRG	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	838
EcoO109I	RGGNCCY	2 cut(s)	280, 489
EcoRII	CCWGG	2 cut(s)	126, 899
EcoT14I	CCWWGG	2 cut(s)	567, 1083
EcoT22I	ATGCAT	1 cut(s)	1231
EcoT38I	GRGCYC	1 cut(s)	840
ErhI	CCWWGG	2 cut(s)	567, 1083
FaeI	CATG	3 cut(s)	191, 609, 1087
FalI	AAGNNNNNCTT	2 cut(s)	712, 744
FaqI	GGGAC	3 cut(s)	502, 644, 778
FatI	CATG	3 cut(s)	187, 605, 1083
FauI	CCCGC	2 cut(s)	206, 736
FauNDI	CATATG	1 cut(s)	1090
Fnu4HI	GCNGC	3 cut(s)	363, 847, 1112
FokI	GGATG	3 cut(s)	584, 687, 1238
FriOI	GRGCYC	1 cut(s)	840
Fsp4HI	GCNGC	3 cut(s)	363, 847, 1112
FspBI	CTAG	3 cut(s)	740, 966, 1236
GlaI	GCGC	1 cut(s)	976
GluI	GCNGC	3 cut(s)	363, 847, 1112
GsaI	CCCAGC	1 cut(s)	1129
GsuI	CTGGAG	1 cut(s)	1119
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	5 cut(s)	380, 535, 547, 763, 1078
HapII	CCGG	1 cut(s)	628
HhaI	GCGC	1 cut(s)	977
Hin1II	CATG	3 cut(s)	191, 609, 1087
Hin6I	GCGC	1 cut(s)	975
HinP1I	GCGC	1 cut(s)	975
HincII	GTYRAC	3 cut(s)	325, 958, 1017
HindII	GTYRAC	3 cut(s)	325, 958, 1017
HinfI	GANTC	2 cut(s)	770, 822
HpaII	CCGG	1 cut(s)	628
HphI	GGTGA	6 cut(s)	311, 1049, 1058, 1112, 1143, 1261
Hpy188I	TCNGA	3 cut(s)	44, 560, 1003
Hpy188III	TCNNGA	3 cut(s)	308, 539, 1136
HpyAV	CCTTC	5 cut(s)	162, 348, 1068, 1163, 1251
HpyCH4III	ACNGT	5 cut(s)	10, 238, 305, 440, 1052
HpyCH4IV	ACGT	2 cut(s)	264, 960
HpyCH4V	TGCA	6 cut(s)	262, 609, 874, 1043, 1048, 1229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	553, 680, 1045
HpyF3I	CTNAG	8 cut(s)	41, 133, 345, 494, 557, 882, 971, 1035
HpySE526I	ACGT	2 cut(s)	264, 960
Hsp92II	CATG	3 cut(s)	191, 609, 1087
HspAI	GCGC	1 cut(s)	975
KflI	GGGWCCC	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	52, 781, 985, 1206
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	3 cut(s)	723, 1216, 1238
MabI	ACCWGGT	1 cut(s)	899
MaeI	CTAG	3 cut(s)	740, 966, 1236
MaeII	ACGT	2 cut(s)	264, 960
MaeIII	GTNAC	4 cut(s)	238, 299, 1030, 1249
MalI	GATC	4 cut(s)	54, 783, 987, 1208
MboI	GATC	4 cut(s)	52, 781, 985, 1206
MboII	GAAGA	2 cut(s)	299, 1224
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	151, 840
MluCI	AATT	4 cut(s)	29, 561, 589, 678
MlyI	GAGTC	1 cut(s)	831
Mph1103I	ATGCAT	1 cut(s)	1231
MseI	TTAA	1 cut(s)	830
MslI	CAYNNNNRTG	3 cut(s)	72, 186, 830
MspA1I	CMGCKG	1 cut(s)	952
MspI	CCGG	1 cut(s)	628
MspR9I	CCNGG	3 cut(s)	128, 629, 901
MvaI	CCWGG	2 cut(s)	128, 901
MvnI	CGCG	1 cut(s)	1111
MwoI	GCNNNNNNNGC	3 cut(s)	553, 680, 1045
NciI	CCSGG	1 cut(s)	629
NcoI	CCATGG	1 cut(s)	1083
NdeI	CATATG	1 cut(s)	1090
NdeII	GATC	4 cut(s)	52, 781, 985, 1206
NlaIII	CATG	3 cut(s)	191, 609, 1087
NlaIV	GGNNCC	4 cut(s)	282, 490, 491, 1131
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	3 cut(s)	299, 1030, 1249
NsiI	ATGCAT	1 cut(s)	1231
NspI	RCATGY	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	609
PceI	AGGCCT	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	770
PkrI	GCNGC	3 cut(s)	364, 848, 1113
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
Ppu21I	YACGTR	1 cut(s)	265
PpuMI	RGGWCCY	2 cut(s)	280, 489
Psp124BI	GAGCTC	1 cut(s)	840
Psp5II	RGGWCCY	2 cut(s)	280, 489
Psp6I	CCWGG	2 cut(s)	126, 899
PspFI	CCCAGC	1 cut(s)	1125
PspGI	CCWGG	2 cut(s)	126, 899
PspN4I	GGNNCC	4 cut(s)	282, 490, 491, 1131
PspPI	GGNCC	4 cut(s)	280, 489, 697, 1077
PspPPI	RGGWCCY	2 cut(s)	280, 489
PstNI	CAGNNNCTG	1 cut(s)	1142
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	952
RseI	CAYNNNNRTG	3 cut(s)	72, 186, 830
SacI	GAGCTC	1 cut(s)	840
SaqAI	TTAA	1 cut(s)	830
SatI	GCNGC	3 cut(s)	363, 847, 1112
Sau3AI	GATC	4 cut(s)	52, 781, 985, 1206
Sau96I	GGNCC	4 cut(s)	280, 489, 697, 1077
SchI	GAGTC	1 cut(s)	831
ScrFI	CCNGG	3 cut(s)	128, 629, 901
SduI	GDGCHC	2 cut(s)	151, 840
SexAI	ACCWGGT	1 cut(s)	899
SfaNI	GCATC	3 cut(s)	723, 1216, 1238
SinI	GGWCC	3 cut(s)	280, 489, 697
SmiMI	CAYNNNNRTG	3 cut(s)	72, 186, 830
SmlI	CTYRAG	2 cut(s)	308, 529
SmoI	CTYRAG	2 cut(s)	308, 529
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	4 cut(s)	29, 561, 589, 678
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	7 cut(s)	213, 603, 683, 743, 846, 1111, 1242
SspMI	CTAG	3 cut(s)	740, 966, 1236
SstI	GAGCTC	1 cut(s)	840
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	3 cut(s)	126, 627, 899
StyI	CCWWGG	2 cut(s)	567, 1083
TaaI	ACNGT	5 cut(s)	10, 238, 305, 440, 1052
TaiI	ACGT	2 cut(s)	267, 963
TaqI	TCGA	4 cut(s)	79, 784, 984, 1209
TasI	AATT	4 cut(s)	29, 561, 589, 678
TauI	GCSGC	2 cut(s)	849, 1114
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	1 cut(s)	830
Tru9I	TTAA	1 cut(s)	830
TscAI	CASTG	2 cut(s)	1050, 1055
TseFI	GTSAC	3 cut(s)	299, 1030, 1249
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	3 cut(s)	299, 1030, 1249
TspDTI	ATGAA	3 cut(s)	468, 783, 1227
TspRI	CASTG	2 cut(s)	1050, 1055
VpaK11BI	GGWCC	3 cut(s)	280, 489, 697
XceI	RCATGY	1 cut(s)	609
XspI	CTAG	3 cut(s)	740, 966, 1236
Zsp2I	ATGCAT	1 cut(s)	1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.