Rorug03G0196400
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014715
Physical Location & Seq
Forward (+)
17266810 .. 17268132
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0196400.1

Sequence Viewer

Length: 519 bp
ATGAGTACCAATCTTGAATCCACATACCACTTGTGCCAACTAGCACATCCTCTTCTGAAAGCTTCAGGAGCAGGCCCGACCTTGCCCAAGGGCAGCCTTGGCAACAGCCCAGGGCCCAAGGGAAGACCAATCCTGGGCACCAAAAGAAATTTCGCCCTAGGCGTGAAGAACCTCATGACCGGCCCTGTTCAGGAGCTGGTAACATCATTCTTGTGTCTTCCGTTGCTGGTGTGGTATCACTTGGTAAGGTTGGGAGTATATACGGTGCAACTAAAGGACAAGATTAGGATCAACAGTGTTGCACTTTGGTTCATCAAAACTCCTCTTGTTGAACCTGTTTTGAGTAACGAAAAGTTTTTGGAGGCTGTCATCTCTCGAACCCCATTAGGACGTACCGGAGAGCCTGAAGAGGTGTCTGCATTGATGGCATTTCTATGCCTTCCGGCAGCCTCTTACATAACAGGGCAGACTATTTGCGTCGATGGAGGGATGACTGTCAATGGCTTCCACTTTCAGTGA

Protein Analysis

172

Amino Acids

18.63

Weight (kDa)

9.16

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 92 - 165 3e-20 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 48, 426
AfaI GTAC 2 cut(s) 7, 394
AfiI CCNNNNNNNGG 2 cut(s) 134, 190
AgsI TTSAA 2 cut(s) 17, 332
AjnI CCWGG 2 cut(s) 109, 132
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 2 cut(s) 62, 196
AluI AGCT 2 cut(s) 62, 196
AlwI GGATC 1 cut(s) 296
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 3 cut(s) 73, 113, 181
ApaI GGGCCC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 93, 446
ApoI RAATTY 1 cut(s) 148
AspA2I CCTAGG 1 cut(s) 157
AspS9I GGNCC 4 cut(s) 74, 113, 114, 182
AvrII CCTAGG 1 cut(s) 157
BaeGI GKGCMC 2 cut(s) 117, 140
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 130, 209
BbvI GCAGC 2 cut(s) 105, 458
BccI CCATC 2 cut(s) 418, 476
BciT130I CCWGG 2 cut(s) 111, 134
BfaI CTAG 2 cut(s) 41, 158
BisI GCNGC 2 cut(s) 94, 447
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 2 cut(s) 95, 448
Bme1390I CCNGG 2 cut(s) 111, 134
BmgT120I GGNCC 4 cut(s) 74, 113, 114, 182
BmiI GGNNCC 2 cut(s) 115, 139
BmrFI CCNGG 2 cut(s) 111, 134
BpiI GAAGAC 2 cut(s) 130, 209
BsaBI GATNNNNATC 1 cut(s) 287
BsaJI CCNNGG 7 cut(s) 87, 97, 109, 110, 117, 133, 157
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 190
Bse118I RCCGGY 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 2 cut(s) 111, 134
BseDI CCNNGG 7 cut(s) 87, 97, 109, 110, 117, 133, 157
BseGI GGATG 2 cut(s) 46, 495
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 134, 190
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 2 cut(s) 117, 140
BseXI GCAGC 2 cut(s) 105, 458
BshFI GGCC 3 cut(s) 75, 115, 183
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 3 cut(s) 180, 396, 443
BslI CCNNNNNNNGG 2 cut(s) 134, 190
BsnI GGCC 3 cut(s) 75, 115, 183
Bsp120I GGGCCC 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 117, 140
Bsp143I GATC 1 cut(s) 288
BspANI GGCC 3 cut(s) 75, 115, 183
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 115, 139
BspPI GGATC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 7 cut(s) 87, 97, 109, 110, 117, 133, 157
BssMI GATC 1 cut(s) 288
BssT1I CCWWGG 4 cut(s) 87, 97, 117, 157
Bst2UI CCWGG 2 cut(s) 111, 134
Bst4CI ACNGT 3 cut(s) 265, 296, 496
Bst6I CTCTTC 2 cut(s) 57, 402
BstC8I GCNNGC 1 cut(s) 73
BstF5I GGATG 2 cut(s) 46, 495
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 3 cut(s) 68, 99, 425
BstNI CCWGG 2 cut(s) 111, 134
BstSCI CCNGG 2 cut(s) 109, 132
BstSLI GKGCMC 2 cut(s) 117, 140
BstV1I GCAGC 2 cut(s) 105, 458
BstV2I GAAGAC 2 cut(s) 130, 209
BsuRI GGCC 3 cut(s) 75, 115, 183
BtsCI GGATG 2 cut(s) 46, 495
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 196
CciI TCATGA 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 4 cut(s) 74, 113, 114, 182
CseI GACGC 1 cut(s) 466
Csp6I GTAC 2 cut(s) 6, 393
CviAII CATG 1 cut(s) 175
CviQI GTAC 2 cut(s) 6, 393
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 57, 402
EarI CTCTTC 2 cut(s) 57, 402
Eco130I CCWWGG 4 cut(s) 87, 97, 117, 157
Eco24I GRGCYC 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 48, 426
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 109, 132
EcoT14I CCWWGG 4 cut(s) 87, 97, 117, 157
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 4 cut(s) 87, 97, 117, 157
FaeI CATG 1 cut(s) 178
FaiI YATR 6 cut(s) 25, 176, 259, 261, 436, 458
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 94, 447
FokI GGATG 2 cut(s) 33, 502
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 94, 447
FspBI CTAG 2 cut(s) 41, 158
GluI GCNGC 2 cut(s) 94, 447
HaeIII GGCC 3 cut(s) 75, 115, 183
HapII CCGG 3 cut(s) 180, 396, 443
HgaI GACGC 1 cut(s) 466
Hin1II CATG 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 1 cut(s) 17
HpaII CCGG 3 cut(s) 180, 396, 443
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 5 cut(s) 14, 66, 175, 191, 375
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 449
HpyCH4III ACNGT 3 cut(s) 265, 296, 496
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 3 cut(s) 268, 302, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 99, 425
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 2 cut(s) 68, 193
Lsp1109I GCAGC 2 cut(s) 105, 458
MaeI CTAG 2 cut(s) 41, 158
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 2 cut(s) 199, 344
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 5 cut(s) 44, 135, 178, 209, 419
MhlI GDGCHC 2 cut(s) 117, 140
MluCI AATT 1 cut(s) 148
MnlI CCTC 7 cut(s) 60, 182, 333, 355, 403, 460, 479
MslI CAYNNNNRTG 2 cut(s) 211, 433
MspI CCGG 3 cut(s) 180, 396, 443
MspR9I CCNGG 2 cut(s) 111, 134
MvaI CCWGG 2 cut(s) 111, 134
MwoI GCNNNNNNNGC 3 cut(s) 68, 99, 425
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 115, 139
PagI TCATGA 1 cut(s) 174
PasI CCCWGGG 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 95, 448
Psp6I CCWGG 2 cut(s) 109, 132
PspGI CCWGG 2 cut(s) 109, 132
PspN4I GGNNCC 2 cut(s) 115, 139
PspOMI GGGCCC 1 cut(s) 113
PspPI GGNCC 4 cut(s) 74, 113, 114, 182
PstNI CAGNNNCTG 1 cut(s) 196
RsaI GTAC 2 cut(s) 7, 394
RsaNI GTAC 2 cut(s) 6, 393
RseI CAYNNNNRTG 2 cut(s) 211, 433
SatI GCNGC 2 cut(s) 94, 447
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 4 cut(s) 74, 113, 114, 182
ScrFI CCNGG 2 cut(s) 111, 134
SduI GDGCHC 2 cut(s) 117, 140
SetI ASST 8 cut(s) 64, 83, 174, 198, 251, 337, 394, 414
SmiMI CAYNNNNRTG 2 cut(s) 211, 433
Sse9I AATT 1 cut(s) 148
SspMI CTAG 2 cut(s) 41, 158
StyD4I CCNGG 2 cut(s) 109, 132
StyI CCWWGG 4 cut(s) 87, 97, 117, 157
TaaI ACNGT 3 cut(s) 265, 296, 496
TaiI ACGT 1 cut(s) 394
TaqI TCGA 2 cut(s) 376, 480
TasI AATT 1 cut(s) 148
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 301
TseI GCWGC 2 cut(s) 93, 446
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 301
XapI RAATTY 1 cut(s) 148
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 2 cut(s) 41, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.