Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014715

Physical Location & Seq

Genomic Coordinates Reverse (-)

53877282 .. 53878500

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG281200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAGAAGAAGGCAATGTCACTCATCCTCTTGGTCTTGGTGATCGCTGTTGACAGGATCTCGGCATATGGTAGTGATCGGGAGCTATCAGTGTTGCAAGGTCTCCACCAAAGCCTTGGCCCTAACAGGTTAAATTGGTCGGATTCTGACTACTGCAGTTGGTTGAAAATATCTTGTAACGAGGATGGAATGGTGGAATCGATTAATTTAAGCGGCCAAAACCTGACAGGAACACTGCCAGCCTCTATTGGAAGCTTGAAATATTTGAAGACACTGGATGTTTCTTACAACCAGATAAGTGGACCCTTCCCAGCCTTATATAATTTGCAGTTGCTTAAAATTCTTCTAGCCCAAAACAACAACTTCTTTTCATTTCCAGAAGAGTTTTTCAGTTCCCAGCTCACAGCCCTCAGTGACATAGATATCAGTAATAATTCATTTGCACCATGGAATCTTACTGGTCACTGTGGGGAGCTTCGGTATTTTCATGCTTCCAATGCCAATATTAGGGGAGCAATAGATGTTTTCACTGGCTTCAATTTTCCAAGGTTGGTTGGATTGGACTTGTCATATAACCAGCTGAATGGTACTATAAATCTGGAGATTGCAAACTTGCCATATCTACGAGTGTTGGATCTTTCCAATAACAAACTGAGTGGTCGGGTACCTGAATTTGGGAAAAAGGTTGAGGTTATATTAGATGGAAACCTGGATCTAAATAGGGACACTGGCCATTCTCATCACCATGTGCTCCTTGTAGTGATTGGTTGTGTTGGTGGGCTACTTATTGTAGTGATCGGGGTTGTTGGTCTAATATTTTACCTTAAGAAAAAACAGCTCCCCTCCGGTGAGCAAAATGTGGTAGAGCTCACTACAAACCCTAGCACGCAAAGCAATCTAGTCAAGCCATTAATGTTATTGGGCTTAAACAGTTTTCCCTTGAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

316

Amino Acids

34.79

Weight (kDa)

6.65

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g14150
rosa_chinensis	RchiOBHm_Chr3g0492421
rosa_multiflora	Rmu_sc0002094.1_g000015 Rmu_sc0034092.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368510 Rroxscaffold_6G00399240
rosa_rugosa	Rorug03G0196400 Rorug04G0206100
rosa_samantha	Rh3CG280300 Rh3DG276400 Rh4AG262900 Rh4BG269000 Rh4CG281100 Rh4CG281200 Rh4CG288700 Rh4DG265300
rosa_wichuraiana	Rw3G022380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	664
AccB1I	GGYRCC	1 cut(s)	664
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	3 cut(s)	65, 642, 720
AcoI	YGGCCR	2 cut(s)	214, 730
AcsI	RAATTY	2 cut(s)	339, 671
AdeI	CACNNNGTG	1 cut(s)	748
AfaI	GTAC	2 cut(s)	589, 666
AfiI	CCNNNNNNNGG	2 cut(s)	507, 674
AflII	CTTAAG	1 cut(s)	824
AgsI	TTSAA	4 cut(s)	166, 259, 268, 538
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	7 cut(s)	85, 255, 400, 475, 580, 838, 868
AluI	AGCT	7 cut(s)	85, 255, 400, 475, 580, 838, 868
Alw21I	GWGCWC	2 cut(s)	753, 870
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	3 cut(s)	65, 642, 720
AoxI	GGCC	3 cut(s)	118, 214, 730
ApoI	RAATTY	2 cut(s)	339, 671
AseI	ATTAAT	2 cut(s)	204, 911
Asp718I	GGTACC	1 cut(s)	664
AspS9I	GGNCC	2 cut(s)	119, 302
AsuHPI	GGTGA	3 cut(s)	52, 734, 860
AvaII	GGWCC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	753, 870
BccI	CCATC	2 cut(s)	179, 695
BciT130I	CCWGG	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	347, 882, 899
BfmI	CTRYAG	1 cut(s)	154
BfrI	CTTAAG	1 cut(s)	824
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	119, 302
BmiI	GGNNCC	2 cut(s)	304, 666
BmrFI	CCNGG	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	620
Bsa29I	ATCGAT	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	115, 446, 545
BsaWI	WCCGGW	1 cut(s)	845
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 674
Bse1I	ACTGG	4 cut(s)	279, 463, 535, 733
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	710
BseCI	ATCGAT	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	115, 446, 545
BseGI	GGATG	3 cut(s)	24, 190, 283
BseLI	CCNNNNNNNGG	2 cut(s)	507, 674
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	424, 644
BseNI	ACTGG	4 cut(s)	279, 463, 535, 733
BseYI	CCCAGC	2 cut(s)	310, 396
BshFI	GGCC	3 cut(s)	120, 216, 732
BshNI	GGYRCC	1 cut(s)	664
BshVI	ATCGAT	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	753, 870
BsiSI	CCGG	1 cut(s)	846
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	2 cut(s)	507, 674
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	737
BsnI	GGCC	3 cut(s)	120, 216, 732
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	753, 870
Bsp143I	GATC	6 cut(s)	42, 57, 76, 634, 712, 795
Bsp19I	CCATGG	1 cut(s)	446
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	3 cut(s)	120, 216, 732
BspCNI	CTCAG	2 cut(s)	423, 645
BspDI	ATCGAT	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	304, 666
BspMAI	CTGCAG	1 cut(s)	158
BspPI	GGATC	3 cut(s)	65, 642, 720
BspT107I	GGYRCC	1 cut(s)	664
BspTI	CTTAAG	1 cut(s)	824
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	4 cut(s)	279, 463, 535, 733
BssECI	CCNNGG	3 cut(s)	115, 446, 545
BssMI	GATC	6 cut(s)	42, 57, 76, 634, 712, 795
BssT1I	CCWWGG	3 cut(s)	115, 446, 545
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	467, 932
Bst6I	CTCTTC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	824
BstC8I	GCNNGC	2 cut(s)	240, 887
BstDEI	CTNAG	2 cut(s)	410, 653
BstDSI	CCRYGG	1 cut(s)	446
BstF5I	GGATG	3 cut(s)	24, 190, 283
BstKTI	GATC	6 cut(s)	45, 60, 79, 637, 715, 798
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	6 cut(s)	42, 57, 76, 634, 712, 795
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 891
BstNI	CCWGG	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	3 cut(s)	57, 634, 712
BstXI	CCANNNNNNTGG	3 cut(s)	116, 299, 584
BstYI	RGATCY	3 cut(s)	57, 634, 712
Bsu15I	ATCGAT	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	120, 216, 732
BsuTUI	ATCGAT	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	446
BtsCI	GGATG	3 cut(s)	24, 190, 283
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	7 cut(s)	96, 233, 272, 418, 463, 528, 726
Cac8I	GCNNGC	2 cut(s)	240, 887
Cfr13I	GGNCC	2 cut(s)	119, 302
ClaI	ATCGAT	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	588, 665
CspCI	CAANNNNNGTGG	2 cut(s)	637, 672
CviAII	CATG	3 cut(s)	447, 488, 746
CviQI	GTAC	2 cut(s)	588, 665
DdeI	CTNAG	2 cut(s)	410, 653
DpnI	GATC	6 cut(s)	44, 59, 78, 636, 714, 797
DpnII	GATC	6 cut(s)	42, 57, 76, 634, 712, 795
DraIII	CACNNNGTG	1 cut(s)	748
EaeI	YGGCCR	2 cut(s)	214, 730
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	868
Eco130I	CCWWGG	3 cut(s)	115, 446, 545
Eco24I	GRGCYC	1 cut(s)	870
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	868
EcoICRI	GAGCTC	1 cut(s)	868
EcoRII	CCWGG	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	3 cut(s)	115, 446, 545
EcoT38I	GRGCYC	1 cut(s)	870
ErhI	CCWWGG	3 cut(s)	115, 446, 545
FaeI	CATG	3 cut(s)	450, 491, 749
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	3 cut(s)	446, 487, 745
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	3 cut(s)	11, 197, 290
FriOI	GRGCYC	1 cut(s)	870
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	3 cut(s)	347, 882, 899
GluI	GCNGC	1 cut(s)	214
GsaI	CCCAGC	2 cut(s)	314, 400
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	3 cut(s)	120, 216, 732
HapII	CCGG	1 cut(s)	846
Hin1II	CATG	3 cut(s)	450, 491, 749
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	3 cut(s)	143, 197, 451
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	3 cut(s)	52, 734, 860
Hpy166II	GTNNAC	2 cut(s)	52, 302
Hpy188I	TCNGA	2 cut(s)	142, 148
Hpy188III	TCNNGA	3 cut(s)	80, 377, 599
Hpy8I	GTNNAC	2 cut(s)	52, 302
HpyAV	CCTTC	2 cut(s)	4, 316
HpyCH4III	ACNGT	2 cut(s)	467, 932
HpyCH4V	TGCA	5 cut(s)	97, 156, 328, 443, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 891
HpyF3I	CTNAG	2 cut(s)	410, 653
Hsp92II	CATG	3 cut(s)	450, 491, 749
KpnI	GGTACC	1 cut(s)	668
Kzo9I	GATC	6 cut(s)	42, 57, 76, 634, 712, 795
LmnI	GCTCC	5 cut(s)	82, 472, 512, 756, 843
MaeI	CTAG	3 cut(s)	347, 882, 899
MaeIII	GTNAC	4 cut(s)	18, 176, 413, 461
MalI	GATC	6 cut(s)	44, 59, 78, 636, 714, 797
MboI	GATC	6 cut(s)	42, 57, 76, 634, 712, 795
MboII	GAAGA	5 cut(s)	16, 19, 280, 335, 392
MflI	RGATCY	3 cut(s)	57, 634, 712
MhlI	GDGCHC	2 cut(s)	753, 870
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	7 cut(s)	133, 205, 322, 339, 433, 538, 671
MluNI	TGGCCA	1 cut(s)	732
MmeI	TCCRAC	3 cut(s)	120, 535, 612
MnlI	CCTC	6 cut(s)	38, 175, 253, 419, 682, 853
Mox20I	TGGCCA	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	7 cut(s)	131, 204, 209, 336, 825, 911, 926
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	580
MspCI	CTTAAG	1 cut(s)	824
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	2 cut(s)	497, 891
NcoI	CCATGG	1 cut(s)	446
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	6 cut(s)	42, 57, 76, 634, 712, 795
NlaIII	CATG	3 cut(s)	450, 491, 749
NlaIV	GGNNCC	2 cut(s)	304, 666
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	3 cut(s)	18, 413, 461
PfeI	GAWTC	3 cut(s)	143, 197, 451
PkrI	GCNGC	1 cut(s)	215
PshBI	ATTAAT	2 cut(s)	204, 911
Psp124BI	GAGCTC	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	2 cut(s)	310, 396
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	304, 666
PspPI	GGNCC	2 cut(s)	119, 302
PstI	CTGCAG	1 cut(s)	158
PsuI	RGATCY	3 cut(s)	57, 634, 712
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	2 cut(s)	589, 666
RsaNI	GTAC	2 cut(s)	588, 665
RseI	CAYNNNNRTG	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	870
SaqAI	TTAA	7 cut(s)	131, 204, 209, 336, 825, 911, 926
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	6 cut(s)	42, 57, 76, 634, 712, 795
Sau96I	GGNCC	2 cut(s)	119, 302
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	2 cut(s)	753, 870
SfcI	CTRYAG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	2 cut(s)	824, 940
SmoI	CTYRAG	2 cut(s)	824, 940
Sse9I	AATT	7 cut(s)	133, 205, 322, 339, 433, 538, 671
SsiI	CCGC	1 cut(s)	213
SspI	AATATT	3 cut(s)	263, 505, 816
SspMI	CTAG	3 cut(s)	347, 882, 899
SstI	GAGCTC	1 cut(s)	870
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	3 cut(s)	115, 446, 545
TaaI	ACNGT	2 cut(s)	467, 932
TaqI	TCGA	1 cut(s)	200
TasI	AATT	7 cut(s)	133, 205, 322, 339, 433, 538, 671
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	143, 197, 451
Tru1I	TTAA	7 cut(s)	131, 204, 209, 336, 825, 911, 926
Tru9I	TTAA	7 cut(s)	131, 204, 209, 336, 825, 911, 926
TscAI	CASTG	7 cut(s)	96, 240, 279, 418, 470, 535, 733
TseFI	GTSAC	3 cut(s)	18, 413, 461
Tsp45I	GTSAC	3 cut(s)	18, 413, 461
TspDTI	ATGAA	4 cut(s)	17, 360, 426, 476
TspRI	CASTG	7 cut(s)	96, 240, 279, 418, 470, 535, 733
Vha464I	CTTAAG	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	302
VspI	ATTAAT	2 cut(s)	204, 911
XapI	RAATTY	2 cut(s)	339, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	3 cut(s)	347, 882, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.