Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014715

Physical Location & Seq

Genomic Coordinates Forward (+)

28183237 .. 28202023

Gene Structure 18787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAACTCACTGCGCTGTCAGGAAATTCAAATTTGAAATCTAAGTTGAGCAGCAGATCGACTGAGAAGAAGCGTGGAGATCGAGAGTCCCTGTTTTGGAGTAGCAGCAAATGGGATTCTTCTGCTAAAGTTGACACAGCTCAGAGCTCTCTTGATACTTTACTTCAGTTCGAACTACTTGAGCTGGTGTTGTTATTCTTTCCTTTGGTTCTGCTTAGAACTTGGGATCTGTTTCTGGAGGTGGTCAGGAATTTGGAGCGTTACACGCCCTGTTTATTACTGGATCTTTCCCATAACCATTTGAGTGGTCGATTACCAAAGTTTGAGCCGAAAGTTGTTGTGAGGGTATATGGAAACCAGGACTTAGATACAGATAGTGCCCCTTCCCCTACCCAAACCCAAACCCAAACCCATTCTCATGTCCCTGTGATCCTCATAGTAAGTGGGTGTGTTGGCGGGCTTCTGTTGGTGTTAGCAACTGTTACTGGGCTTTATGCTTACCTGCACGTAAACAAAGAGGAGGACCCTGAAGAGAGTTTTGGTGACAGTCTTGAGAAGTTTTCTGTTGACACTTTGAGTAGGGCAACTGGTGGATTTAGTGCATCAAATTTATTGGGAGAGGGGGGCTTTTCAAAGGTGTACAAGGGTGTGTTGGAGAACGGCACTGAGATAGCTGTGAAGAGGATAGAAAGGCTTAATGTCAAGGACGAAAATGGTAAAATCATTCAGCTGGTTGACGTTTCTAGGCTTAGCGCCATTGTCGATCCTCCCATACTTTCAGATGGCACTTTGTCAACCATTGCTGTTGTGACTGAGCTTGCACTGCACTGTGTTCACCCTAATCACCACAGAAGGCCCACCATGGCATATGTGTTTGGTGAACTCACGCGGCTGGTTGAGGGCTGGGAACCTCCAGAGCCTGAAGTATCACCTTTTGATAGGGTGGAAGGAGAAGCACCGACACTATCACAGATATTCAGGGAGATCGATGAAACTGATTTGGATGCATCTTCTAGTAGCGGTTTGGTGACAGGAAGGTCTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

349

Amino Acids

38.52

Weight (kDa)

5.27

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g14150
rosa_chinensis	RchiOBHm_Chr3g0492421
rosa_multiflora	Rmu_sc0002094.1_g000015 Rmu_sc0034092.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368510 Rroxscaffold_6G00399240
rosa_rugosa	Rorug03G0196400 Rorug04G0206100
rosa_samantha	Rh3CG280300 Rh3DG276400 Rh4AG262900 Rh4BG269000 Rh4CG281100 Rh4CG281200 Rh4CG288700 Rh4DG265300
rosa_wichuraiana	Rw3G022380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1036
Acc36I	ACCTGC	1 cut(s)	510
AccII	CGCG	1 cut(s)	889
AciI	CCGC	3 cut(s)	456, 889, 1020
AclWI	GGATC	4 cut(s)	234, 291, 424, 758
AcsI	RAATTY	4 cut(s)	25, 31, 250, 607
AcuI	CTGAAG	3 cut(s)	149, 549, 942
AfaI	GTAC	1 cut(s)	641
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	30, 37, 633
AjnI	CCWGG	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	6 cut(s)	140, 147, 184, 674, 730, 817
AluI	AGCT	6 cut(s)	140, 147, 184, 674, 730, 817
Alw21I	GWGCWC	1 cut(s)	149
AlwI	GGATC	4 cut(s)	234, 291, 424, 758
AlwNI	CAGNNNCTG	1 cut(s)	920
AoxI	GGCC	1 cut(s)	854
ApeKI	GCWGC	2 cut(s)	51, 105
ApoI	RAATTY	4 cut(s)	25, 31, 250, 607
AspLEI	GCGC	2 cut(s)	16, 755
AspS9I	GGNCC	2 cut(s)	523, 855
AsuHPI	GGTGA	6 cut(s)	554, 827, 836, 890, 921, 1039
AsuII	TTCGAA	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	63, 117
BccI	CCATC	1 cut(s)	776
BceAI	ACGGC	1 cut(s)	676
BciT130I	CCWGG	1 cut(s)	359
BfaI	CTAG	2 cut(s)	744, 1014
BfoI	RGCGCY	1 cut(s)	756
BfuAI	ACCTGC	1 cut(s)	510
BisI	GCNGC	3 cut(s)	52, 106, 890
BlpI	GCTNAGC	1 cut(s)	749
BlsI	GCNGC	3 cut(s)	53, 107, 891
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	523, 855
BmiI	GGNNCC	2 cut(s)	525, 909
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	3 cut(s)	611, 994, 1016
BmuI	ACTGGG	1 cut(s)	495
BpmI	CTGGAG	2 cut(s)	257, 897
Bpu1102I	GCTNAGC	1 cut(s)	749
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	200, 572
Bsa29I	ATCGAT	1 cut(s)	987
BsaAI	YACGTR	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	861
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	3 cut(s)	285, 490, 592
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	359
BseCI	ATCGAT	1 cut(s)	987
BseDI	CCNNGG	1 cut(s)	861
BseGI	GGATG	1 cut(s)	1009
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	4 cut(s)	54, 155, 657, 804
BseNI	ACTGG	3 cut(s)	285, 490, 592
BseRI	GAGGAG	1 cut(s)	533
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	63, 117
BseYI	CCCAGC	1 cut(s)	903
BsgI	GTGCAG	2 cut(s)	488, 809
Bsh1236I	CGCG	1 cut(s)	889
BshFI	GGCC	1 cut(s)	856
BshVI	ATCGAT	1 cut(s)	987
BsiHKAI	GWGCWC	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	73, 407
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	73, 407
BsnI	GGCC	1 cut(s)	856
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	149, 382
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	7 cut(s)	56, 79, 226, 283, 429, 763, 984
Bsp1720I	GCTNAGC	1 cut(s)	749
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	3 cut(s)	456, 889, 1020
BspANI	GGCC	1 cut(s)	856
BspCNI	CTCAG	4 cut(s)	55, 154, 658, 805
BspDI	ATCGAT	1 cut(s)	987
BspFNI	CGCG	1 cut(s)	889
BspLI	GGNNCC	2 cut(s)	525, 909
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	4 cut(s)	234, 291, 424, 758
BspT104I	TTCGAA	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	798
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	3 cut(s)	285, 490, 592
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	7 cut(s)	56, 79, 226, 283, 429, 763, 984
BssT1I	CCWWGG	1 cut(s)	861
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	481, 548, 830
Bst6I	CTCTTC	2 cut(s)	525, 674
BstAUI	TGTACA	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	508
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	458, 819
BstDEI	CTNAG	8 cut(s)	42, 63, 141, 215, 364, 666, 749, 813
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	1 cut(s)	1009
BstFNI	CGCG	1 cut(s)	889
BstH2I	RGCGCY	1 cut(s)	756
BstHHI	GCGC	2 cut(s)	16, 755
BstKTI	GATC	7 cut(s)	59, 82, 229, 286, 432, 766, 987
BstMBI	GATC	7 cut(s)	56, 79, 226, 283, 429, 763, 984
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 823
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	889
BstV1I	GCAGC	2 cut(s)	63, 117
BstX2I	RGATCY	2 cut(s)	226, 283
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	2 cut(s)	226, 283
Bsu15I	ATCGAT	1 cut(s)	987
BsuRI	GGCC	1 cut(s)	856
BsuTUI	ATCGAT	1 cut(s)	987
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	1 cut(s)	1009
BtsI	GCAGTG	2 cut(s)	9, 821
BtsIMutI	CAGTG	4 cut(s)	9, 663, 821, 826
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	458, 819
CaiI	CAGNNNCTG	1 cut(s)	920
CfoI	GCGC	2 cut(s)	16, 755
Cfr13I	GGNCC	2 cut(s)	523, 855
ClaI	ATCGAT	1 cut(s)	987
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	2 cut(s)	419, 862
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	8 cut(s)	42, 63, 141, 215, 364, 666, 749, 813
DpnI	GATC	7 cut(s)	58, 81, 228, 285, 431, 765, 986
DpnII	GATC	7 cut(s)	56, 79, 226, 283, 429, 763, 984
DrdI	GACNNNNNNGTC	1 cut(s)	1036
DseDI	GACNNNNNNGTC	1 cut(s)	1036
Eam1104I	CTCTTC	2 cut(s)	525, 674
EarI	CTCTTC	2 cut(s)	525, 674
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	147
Eco57I	CTGAAG	3 cut(s)	149, 549, 942
EcoICRI	GAGCTC	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	861
EcoT22I	ATGCAT	1 cut(s)	1009
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	2 cut(s)	422, 865
FaqI	GGGAC	2 cut(s)	73, 407
FatI	CATG	2 cut(s)	418, 861
FauI	CCCGC	1 cut(s)	449
FauNDI	CATATG	1 cut(s)	868
Fnu4HI	GCNGC	3 cut(s)	52, 106, 890
FokI	GGATG	1 cut(s)	1016
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	52, 106, 890
FspBI	CTAG	2 cut(s)	744, 1014
GlaI	GCGC	2 cut(s)	15, 754
GluI	GCNGC	3 cut(s)	52, 106, 890
GsaI	CCCAGC	1 cut(s)	907
GsuI	CTGGAG	2 cut(s)	257, 897
HaeII	RGCGCY	1 cut(s)	756
HaeIII	GGCC	1 cut(s)	856
HhaI	GCGC	2 cut(s)	16, 755
Hin1II	CATG	2 cut(s)	422, 865
Hin6I	GCGC	2 cut(s)	14, 753
HinP1I	GCGC	2 cut(s)	14, 753
HincII	GTYRAC	4 cut(s)	133, 568, 736, 795
HindII	GTYRAC	4 cut(s)	133, 568, 736, 795
HinfI	GANTC	2 cut(s)	86, 116
HphI	GGTGA	6 cut(s)	554, 827, 836, 890, 921, 1039
Hpy166II	GTNNAC	8 cut(s)	133, 511, 568, 640, 736, 795, 835, 881
Hpy188I	TCNGA	2 cut(s)	144, 781
Hpy188III	TCNNGA	7 cut(s)	21, 83, 152, 236, 247, 551, 914
Hpy8I	GTNNAC	8 cut(s)	133, 511, 568, 640, 736, 795, 835, 881
HpyAV	CCTTC	4 cut(s)	393, 846, 941, 1029
HpyCH4III	ACNGT	3 cut(s)	481, 548, 830
HpyCH4IV	ACGT	2 cut(s)	507, 738
HpyCH4V	TGCA	5 cut(s)	505, 602, 821, 826, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 823
HpyF3I	CTNAG	8 cut(s)	42, 63, 141, 215, 364, 666, 749, 813
HpySE526I	ACGT	2 cut(s)	507, 738
Hsp92II	CATG	2 cut(s)	422, 865
HspAI	GCGC	2 cut(s)	14, 753
Kzo9I	GATC	7 cut(s)	56, 79, 226, 283, 429, 763, 984
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	63, 117
LweI	GCATC	3 cut(s)	611, 994, 1016
MaeI	CTAG	2 cut(s)	744, 1014
MaeII	ACGT	2 cut(s)	507, 738
MaeIII	GTNAC	5 cut(s)	260, 481, 542, 808, 1027
MalI	GATC	7 cut(s)	58, 81, 228, 285, 431, 765, 986
MboI	GATC	7 cut(s)	56, 79, 226, 283, 429, 763, 984
MboII	GAAGA	5 cut(s)	79, 111, 542, 691, 1002
MflI	RGATCY	2 cut(s)	226, 283
MhlI	GDGCHC	2 cut(s)	149, 382
MluCI	AATT	4 cut(s)	25, 31, 250, 607
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	633
Mph1103I	ATGCAT	1 cut(s)	1009
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	303, 417
MspA1I	CMGCKG	1 cut(s)	730
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	889
MwoI	GCNNNNNNNGC	2 cut(s)	265, 823
NcoI	CCATGG	1 cut(s)	861
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	7 cut(s)	56, 79, 226, 283, 429, 763, 984
NlaIII	CATG	2 cut(s)	422, 865
NlaIV	GGNNCC	2 cut(s)	525, 909
NmuCI	GTSAC	3 cut(s)	542, 808, 1027
NsiI	ATGCAT	1 cut(s)	1009
NspV	TTCGAA	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	53, 107, 891
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	903
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	525, 909
PspPI	GGNCC	2 cut(s)	523, 855
PspPPI	RGGWCCY	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	920
PsuI	RGATCY	2 cut(s)	226, 283
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	2 cut(s)	303, 417
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	3 cut(s)	52, 106, 890
Sau3AI	GATC	7 cut(s)	56, 79, 226, 283, 429, 763, 984
Sau96I	GGNCC	2 cut(s)	523, 855
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	2 cut(s)	149, 382
SfaNI	GCATC	3 cut(s)	611, 994, 1016
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	303, 417
SmlI	CTYRAG	2 cut(s)	179, 551
SmoI	CTYRAG	2 cut(s)	179, 551
Sse9I	AATT	4 cut(s)	25, 31, 250, 607
SsiI	CCGC	3 cut(s)	456, 889, 1020
SspMI	CTAG	2 cut(s)	744, 1014
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	3 cut(s)	481, 548, 830
TaiI	ACGT	2 cut(s)	510, 741
TaqI	TCGA	6 cut(s)	59, 82, 171, 310, 762, 987
TasI	AATT	4 cut(s)	25, 31, 250, 607
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	4 cut(s)	16, 670, 828, 833
TseFI	GTSAC	3 cut(s)	542, 808, 1027
TseI	GCWGC	2 cut(s)	51, 105
Tsp45I	GTSAC	3 cut(s)	542, 808, 1027
TspDTI	ATGAA	2 cut(s)	17, 1005
TspRI	CASTG	4 cut(s)	16, 670, 828, 833
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	4 cut(s)	25, 31, 250, 607
XspI	CTAG	2 cut(s)	744, 1014
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.