Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011326

Physical Location & Seq

Genomic Coordinates Forward (+)

31818473 .. 31821218

Gene Structure 2746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAGGCAGTGGAGCTGAAGAAGGACATAGCCGAGTTCTACGACGAGTCGTCTGGGTTATGGGAGGATCTCTGGGGCGACCACATGCACCACGGCTTCTACGTCCCCAAGGCCGCCGGCGTTTCGGTGTCGGACCACCGGGCGGCCCAGACCCGGATGATCGACGAGGTGCTCCGGTTCGCTGGGATTTCTGAGATGTGTCCAATTGGGAAGGGGAAGAATGTAGTAGATGTTGGGTGTGGGATTGGAGGGAGCTCCCGATATCTGGCTAGCAAATACGGGGCCAATTGCAAAGGGATTACTCTGAGTCCCGTACAGGCTCAAAGGGCCAATGCTCTTGCTGCTGCTCAAGGCCTAGCCAATAAGGCATCCTTTCAAGTTGGTGATGCTCTAGCACAACCATTTCCTGATGGCCAATTTGATCTGGTTTGGTCCATGGAGAGTGGGGAACACATGCCTGATAAAGCAAAGTTTGTTGATGAGTTGGTTCGAGTTGCGGCACCAGGAGCAACGATAATACTAGTTACATGGTGCCACAGGGATCTTGGTGCTTCTGAACAATCATTGCAGCCAGATGAGAAAAAGCTCCTGGACAAGATATGCAATGCTTTCTATCTTCCAGCTTGGTGTTCTACTGCTGACTACCTCAAGCTACTCGAGTCCTACTCACTCGAGGATATCAAGGCTGAGGACTGGTCTCCGTATGTTGCCCCATTTTGGCCGGCAGTGATTCGCTCAGCATTGACATTTAAGGGTTTCTTTTCTCTGTTGCGCACAGGAACGAAAACAATAAGAGGAGCATTGGCAATGCCATTGATGATCCAAGGATTCAAGAAGGATCTAATTAAGTATTCCGTTATTACATGCCGAAAACCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0016740 GO:0016741 GO:0018130 GO:0032259 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050342 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

293

Amino Acids

32.21

Weight (kDa)

6.11

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMAS	PF02353	9 - 174	3e-12	Mycolic acid cyclopropane synthetase
Methyltransf_23	PF13489	48 - 190	4e-14	Methyltransferase domain
Methyltransf_31	PF13847	70 - 185	2.3e-15	Methyltransferase domain
Methyltransf_25	PF13649	75 - 169	1.5e-18	Methyltransferase domain
Methyltransf_11	PF08241	76 - 173	1.7e-20	Methyltransferase domain
Methyltransf_12	PF08242	76 - 171	8.6e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64970
fragaria_vesca	FvH4_6g17810
malus_domestica	MD12G1017400.v1.1 MD14G1015100.v1.1
prunus_persica	Prupe.7G118300_v2.0.a1 Prupe.7G118300_v2.0.a1 Prupe.7G118300_v2.0.a1 Prupe.7G118300_v2.0.a1
pyrus_communis	pycom12g01400 pycom14g01260
rosa_chinensis	RchiOBHm_Chr3g0472061
rosa_laevigata	RLG00000024108
rosa_multiflora	Rmu_sc0002532.1_g000012
rosa_roxburghii	Rroxscaffold_6G00409280
rosa_samantha	Rh3AG173700 Rh3BG199100 Rh3CG190200 Rh3CG197600 Rh3DG175400
rosa_wichuraiana	Rw3G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	773
AccB1I	GGYRCC	2 cut(s)	499, 531
AciI	CCGC	3 cut(s)	114, 143, 497
AclWI	GGATC	4 cut(s)	75, 549, 814, 846
AcoI	YGGCCR	2 cut(s)	412, 719
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	4 cut(s)	142, 153, 265, 717
AgsI	TTSAA	2 cut(s)	377, 832
AhdI	GACNNNNNGTC	1 cut(s)	49
AhlI	ACTAGT	1 cut(s)	520
AjnI	CCWGG	2 cut(s)	502, 588
AluBI	AGCT	5 cut(s)	16, 255, 586, 623, 652
AluI	AGCT	5 cut(s)	16, 255, 586, 623, 652
Alw21I	GWGCWC	2 cut(s)	174, 257
Alw26I	GTCTC	1 cut(s)	702
AlwI	GGATC	4 cut(s)	75, 549, 814, 846
Ama87I	CYCGRG	2 cut(s)	656, 671
AoxI	GGCC	7 cut(s)	111, 144, 282, 327, 352, 412, 719
ApeKI	GCWGC	3 cut(s)	341, 344, 568
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	5 cut(s)	133, 145, 282, 327, 432
AsuC2I	CCSGG	2 cut(s)	140, 154
AsuHPI	GGTGA	1 cut(s)	395
AsuNHI	GCTAGC	1 cut(s)	269
AvaI	CYCGRG	2 cut(s)	656, 671
AvaII	GGWCC	2 cut(s)	133, 432
BalI	TGGCCA	1 cut(s)	414
BanI	GGYRCC	2 cut(s)	499, 531
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	174, 257
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	328, 331, 580
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	504, 590
BcnI	CCSGG	2 cut(s)	140, 154
BcoDI	GTCTC	1 cut(s)	702
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	4 cut(s)	270, 356, 392, 521
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	6 cut(s)	114, 144, 342, 345, 498, 569
BlpI	GCTNAGC	1 cut(s)	736
BlsI	GCNGC	6 cut(s)	115, 145, 343, 346, 499, 570
Bme1390I	CCNGG	4 cut(s)	140, 154, 504, 590
Bme18I	GGWCC	2 cut(s)	133, 432
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmeT110I	CYCGRG	2 cut(s)	656, 671
BmgT120I	GGNCC	5 cut(s)	133, 145, 282, 327, 432
BmiI	GGNNCC	3 cut(s)	283, 501, 533
BmrFI	CCNGG	4 cut(s)	140, 154, 504, 590
BmsI	GCATC	2 cut(s)	376, 377
BmtI	GCTAGC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	736
BpuEI	CTTGAG	2 cut(s)	333, 632
BpuMI	CCSGG	2 cut(s)	140, 154
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	4 cut(s)	91, 108, 435, 823
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 153, 265, 717
Bse118I	RCCGGY	2 cut(s)	116, 721
Bse1I	ACTGG	1 cut(s)	698
Bse3DI	GCAATG	3 cut(s)	563, 610, 813
BseBI	CCWGG	2 cut(s)	504, 590
BseDI	CCNNGG	4 cut(s)	91, 108, 435, 823
BseGI	GGATG	2 cut(s)	162, 368
BseLI	CCNNNNNNNGG	4 cut(s)	142, 153, 265, 717
BseMI	GCAATG	3 cut(s)	563, 610, 813
BseMII	CTCAG	4 cut(s)	183, 296, 678, 750
BseNI	ACTGG	1 cut(s)	698
BseRI	GAGGAG	1 cut(s)	810
BseXI	GCAGC	3 cut(s)	328, 331, 580
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	7 cut(s)	113, 146, 284, 329, 354, 414, 721
BshNI	GGYRCC	2 cut(s)	499, 531
BsiHKAI	GWGCWC	2 cut(s)	174, 257
BsiHKCI	CYCGRG	2 cut(s)	656, 671
BsiSI	CCGG	5 cut(s)	117, 139, 154, 175, 722
BslFI	GGGAC	2 cut(s)	89, 294
BslI	CCNNNNNNNGG	4 cut(s)	142, 153, 265, 717
BsmAI	GTCTC	1 cut(s)	702
BsmFI	GGGAC	2 cut(s)	89, 294
BsnI	GGCC	7 cut(s)	113, 146, 284, 329, 354, 414, 721
Bso31I	GGTCTC	1 cut(s)	702
BsoBI	CYCGRG	2 cut(s)	656, 671
Bsp1286I	GDGCHC	2 cut(s)	174, 257
Bsp143I	GATC	6 cut(s)	67, 159, 421, 541, 819, 838
Bsp1720I	GCTNAGC	1 cut(s)	736
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	3 cut(s)	114, 143, 497
BspANI	GGCC	7 cut(s)	113, 146, 284, 329, 354, 414, 721
BspCNI	CTCAG	4 cut(s)	184, 297, 679, 749
BspLI	GGNNCC	3 cut(s)	283, 501, 533
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	4 cut(s)	75, 549, 814, 846
BspT107I	GGYRCC	2 cut(s)	499, 531
BspTNI	GGTCTC	1 cut(s)	702
BsrDI	GCAATG	3 cut(s)	563, 610, 813
BsrFI	RCCGGY	2 cut(s)	116, 721
BsrI	ACTGG	1 cut(s)	698
BssAI	RCCGGY	2 cut(s)	116, 721
BssECI	CCNNGG	4 cut(s)	91, 108, 435, 823
BssMI	GATC	6 cut(s)	67, 159, 421, 541, 819, 838
BssT1I	CCWWGG	3 cut(s)	108, 435, 823
Bst2UI	CCWGG	2 cut(s)	504, 590
BstC8I	GCNNGC	3 cut(s)	118, 271, 723
BstDEI	CTNAG	4 cut(s)	192, 305, 687, 736
BstDSI	CCRYGG	2 cut(s)	91, 435
BstF5I	GGATG	2 cut(s)	162, 368
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	6 cut(s)	70, 162, 424, 544, 822, 841
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	6 cut(s)	67, 159, 421, 541, 819, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 341, 365, 506
BstNI	CCWGG	2 cut(s)	504, 590
BstNSI	RCATGY	3 cut(s)	88, 457, 867
BstSCI	CCNGG	4 cut(s)	138, 152, 502, 588
BstV1I	GCAGC	3 cut(s)	328, 331, 580
BstX2I	RGATCY	3 cut(s)	67, 541, 838
BstYI	RGATCY	3 cut(s)	67, 541, 838
BsuRI	GGCC	7 cut(s)	113, 146, 284, 329, 354, 414, 721
BtgI	CCRYGG	2 cut(s)	91, 435
BtsCI	GGATG	2 cut(s)	162, 368
BtsI	GCAGTG	2 cut(s)	15, 732
BtsIMutI	CAGTG	2 cut(s)	15, 732
Cac8I	GCNNGC	3 cut(s)	118, 271, 723
CfoI	GCGC	1 cut(s)	774
Cfr10I	RCCGGY	2 cut(s)	116, 721
Cfr13I	GGNCC	5 cut(s)	133, 145, 282, 327, 432
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	5 cut(s)	85, 436, 454, 528, 864
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	4 cut(s)	192, 305, 687, 736
DpnI	GATC	6 cut(s)	69, 161, 423, 543, 821, 840
DpnII	GATC	6 cut(s)	67, 159, 421, 541, 819, 838
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	2 cut(s)	412, 719
Eam1105I	GACNNNNNGTC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	3 cut(s)	108, 435, 823
Eco147I	AGGCCT	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	702
Eco32I	GATATC	2 cut(s)	263, 679
Eco47I	GGWCC	2 cut(s)	133, 432
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	2 cut(s)	656, 671
EcoICRI	GAGCTC	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	502, 588
EcoRV	GATATC	2 cut(s)	263, 679
EcoT14I	CCWWGG	3 cut(s)	108, 435, 823
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	3 cut(s)	108, 435, 823
FaeI	CATG	5 cut(s)	88, 439, 457, 531, 867
FaiI	YATR	9 cut(s)	29, 61, 86, 437, 455, 529, 601, 705, 865
FalI	AAGNNNNNCTT	4 cut(s)	356, 388, 743, 775
FaqI	GGGAC	2 cut(s)	89, 294
FatI	CATG	5 cut(s)	84, 435, 453, 527, 863
Fnu4HI	GCNGC	6 cut(s)	114, 144, 342, 345, 498, 569
FokI	GGATG	2 cut(s)	169, 355
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	6 cut(s)	114, 144, 342, 345, 498, 569
FspBI	CTAG	4 cut(s)	270, 356, 392, 521
FspI	TGCGCA	1 cut(s)	773
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	6 cut(s)	114, 144, 342, 345, 498, 569
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	7 cut(s)	113, 146, 284, 329, 354, 414, 721
HapII	CCGG	5 cut(s)	117, 139, 154, 175, 722
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	5 cut(s)	88, 439, 457, 531, 867
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	5 cut(s)	47, 307, 659, 730, 828
HpaII	CCGG	5 cut(s)	117, 139, 154, 175, 722
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	4 cut(s)	133, 193, 306, 556
Hpy188III	TCNNGA	3 cut(s)	258, 407, 832
Hpy99I	CGWCG	2 cut(s)	47, 167
HpyAV	CCTTC	3 cut(s)	16, 205, 829
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	88, 291, 568, 603
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 341, 365, 506
HpyF3I	CTNAG	4 cut(s)	192, 305, 687, 736
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	88, 439, 457, 531, 867
HspAI	GCGC	1 cut(s)	772
KroI	GCCGGC	2 cut(s)	116, 721
KroNI	GCCGGC	2 cut(s)	118, 723
Kzo9I	GATC	6 cut(s)	67, 159, 421, 541, 819, 838
LmnI	GCTCC	7 cut(s)	13, 177, 252, 260, 506, 591, 797
Lsp1109I	GCAGC	3 cut(s)	328, 331, 580
LweI	GCATC	2 cut(s)	376, 377
MaeI	CTAG	4 cut(s)	270, 356, 392, 521
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	6 cut(s)	69, 161, 423, 543, 821, 840
MboI	GATC	6 cut(s)	67, 159, 421, 541, 819, 838
MboII	GAAGA	3 cut(s)	31, 229, 608
MfeI	CAATTG	2 cut(s)	204, 286
MflI	RGATCY	3 cut(s)	67, 541, 838
MhlI	GDGCHC	2 cut(s)	174, 257
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	4 cut(s)	204, 286, 416, 843
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	3 cut(s)	56, 316, 668
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	7 cut(s)	58, 160, 242, 656, 667, 682, 788
Mox20I	TGGCCA	1 cut(s)	414
MreI	CGCCGGCG	1 cut(s)	116
MroNI	GCCGGC	2 cut(s)	116, 721
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	2 cut(s)	750, 846
Msp20I	TGGCCA	1 cut(s)	414
MspI	CCGG	5 cut(s)	117, 139, 154, 175, 722
MspR9I	CCNGG	4 cut(s)	140, 154, 504, 590
MunI	CAATTG	2 cut(s)	204, 286
MvaI	CCWGG	2 cut(s)	504, 590
MwoI	GCNNNNNNNGC	4 cut(s)	326, 341, 365, 506
NaeI	GCCGGC	2 cut(s)	118, 723
NciI	CCSGG	2 cut(s)	140, 154
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	6 cut(s)	67, 159, 421, 541, 819, 838
NgoMIV	GCCGGC	2 cut(s)	116, 721
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	5 cut(s)	88, 439, 457, 531, 867
NlaIV	GGNNCC	3 cut(s)	283, 501, 533
NmeAIII	GCCGAG	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	773
NspI	RCATGY	3 cut(s)	88, 457, 867
PaeR7I	CTCGAG	2 cut(s)	656, 671
PceI	AGGCCT	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	2 cut(s)	118, 723
PfeI	GAWTC	2 cut(s)	730, 828
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	6 cut(s)	115, 145, 343, 346, 499, 570
PleI	GAGTC	3 cut(s)	55, 315, 667
PpsI	GAGTC	3 cut(s)	55, 315, 667
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	502, 588
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	502, 588
PspN4I	GGNNCC	3 cut(s)	283, 501, 533
PspPI	GGNCC	5 cut(s)	133, 145, 282, 327, 432
PspXI	VCTCGAGB	2 cut(s)	656, 671
PsuI	RGATCY	3 cut(s)	67, 541, 838
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	750, 846
SatI	GCNGC	6 cut(s)	114, 144, 342, 345, 498, 569
Sau3AI	GATC	6 cut(s)	67, 159, 421, 541, 819, 838
Sau96I	GGNCC	5 cut(s)	133, 145, 282, 327, 432
SchI	GAGTC	3 cut(s)	56, 316, 668
ScrFI	CCNGG	4 cut(s)	140, 154, 504, 590
SduI	GDGCHC	2 cut(s)	174, 257
SetI	ASST	9 cut(s)	18, 105, 171, 257, 588, 625, 648, 654, 877
SfaNI	GCATC	2 cut(s)	376, 377
Sfr274I	CTCGAG	2 cut(s)	656, 671
SgrAI	CRCCGGYG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	133, 432
SlaI	CTCGAG	2 cut(s)	656, 671
SmlI	CTYRAG	4 cut(s)	348, 647, 656, 671
SmoI	CTYRAG	4 cut(s)	348, 647, 656, 671
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	4 cut(s)	204, 286, 416, 843
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	3 cut(s)	114, 143, 497
SspMI	CTAG	4 cut(s)	270, 356, 392, 521
SstI	GAGCTC	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	4 cut(s)	138, 152, 502, 588
StyI	CCWWGG	3 cut(s)	108, 435, 823
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	162, 490, 657, 672
TasI	AATT	4 cut(s)	204, 286, 416, 843
TauI	GCSGC	3 cut(s)	116, 146, 500
TfiI	GAWTC	2 cut(s)	730, 828
Tru1I	TTAA	2 cut(s)	750, 846
Tru9I	TTAA	2 cut(s)	750, 846
TscAI	CASTG	2 cut(s)	15, 732
TseI	GCWGC	3 cut(s)	341, 344, 568
TspGWI	ACGGA	2 cut(s)	690, 844
TspRI	CASTG	2 cut(s)	15, 732
VpaK11BI	GGWCC	2 cut(s)	133, 432
XceI	RCATGY	3 cut(s)	88, 457, 867
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XhoI	CTCGAG	2 cut(s)	656, 671
XspI	CTAG	4 cut(s)	270, 356, 392, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.