Rw3G016690
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
17857284 .. 17861351
4068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016690.1

Sequence Viewer

Length: 873 bp
ATGGAGGCAGTGGAGCTGAAGAAGGACATAGCCGAGTTCTACGACGAGTCGTCTGGGTTATGGGAGGACCTCTGGGGCGACCACATGCACCACGGCTTCTACGACCCCAAGGCCGCCGACGTCTCGGTGTCGGACCACCGGGCGGCCCAGACCCGGATGATCGACGAGGTGCTCCGGTTCGCGGGGATTTCTGACAAGTGTCCAATTGGGAATGTAGTGGATGTTGGGTGTGGGATTGGAGGGAGCTCCAGATATCTGGCTAGCAAATACGGGGCCAATTGCAAAGGGATTACTCTGAGTCCCGTACAGGCTCTGAGGGCCAATGCTCTTGCTGCTGCTCAAGGCATAGCCAATAAGGCATCCTTTCAAGTTGCTGATGCTCTAGCACAACCATTTCCTGATGGCCAATTTGATCTGGTTTGGTCCATGGAGAGTGGGGAACACATGCCTGATAAAGCAAAGTTTGTTGATGAGTTGGTTCGAGTTGCGGCACCAGGAGCAACGATAATACTAGTTACATGGTGCCACAGGGATCTTGGTGCGTCTGAACAATCATTGCAGCCAGATGAGAAAAAGCTCCTGGACAAGATATGCAATGCTTTCTATCTTCCTGCTTGGTGTTCTACTGCTGACTACCTCAAGCTACTCGAGTCTTACTCACTCGAGGATATCAAGGCTGAGGACTGGTCTCCGTATGTTGCCCCATTTTGGCCGGCAGTGATTCGCTCAGCATTGACATTTAAGGGTTTCTTTTCTCTGTTGCGCACAGGAATGAAAACAATAAGAGGAGCATTGGCAATGCCATTGATGATCCAAGGATTCAAGAAGGATCTAATTAAGTATTCCATTATTACATGCCGAAAACCTGAATAG

Protein Analysis

290

Amino Acids

31.99

Weight (kDa)

5.59

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 8 - 171 5.2e-11 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 48 - 187 7.1e-13 Methyltransferase domain
Methyltransf_31 PF13847 71 - 182 2e-12 Methyltransferase domain
Methyltransf_25 PF13649 72 - 166 1.7e-17 Methyltransferase domain
Methyltransf_11 PF08241 73 - 170 2.2e-19 Methyltransferase domain
Methyltransf_12 PF08242 73 - 168 2.3e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
Acc16I TGCGCA 1 cut(s) 764
AccB1I GGYRCC 2 cut(s) 490, 522
AccII CGCG 1 cut(s) 182
AciI CCGC 4 cut(s) 114, 143, 182, 488
AclWI GGATC 3 cut(s) 540, 805, 837
AcoI YGGCCR 2 cut(s) 403, 710
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 4 cut(s) 142, 153, 181, 708
AgsI TTSAA 2 cut(s) 368, 823
AhdI GACNNNNNGTC 1 cut(s) 49
AhlI ACTAGT 1 cut(s) 511
AjnI CCWGG 2 cut(s) 493, 579
AluBI AGCT 4 cut(s) 16, 246, 577, 643
AluI AGCT 4 cut(s) 16, 246, 577, 643
Alw21I GWGCWC 2 cut(s) 174, 248
Alw26I GTCTC 2 cut(s) 127, 693
AlwI GGATC 3 cut(s) 540, 805, 837
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 2 cut(s) 647, 662
AoxI GGCC 6 cut(s) 111, 144, 273, 318, 403, 710
ApeKI GCWGC 3 cut(s) 332, 335, 559
AspLEI GCGC 1 cut(s) 765
AspS9I GGNCC 6 cut(s) 67, 133, 145, 273, 318, 423
AsuC2I CCSGG 2 cut(s) 140, 154
AsuNHI GCTAGC 1 cut(s) 260
AvaI CYCGRG 2 cut(s) 647, 662
AvaII GGWCC 3 cut(s) 67, 133, 423
BalI TGGCCA 1 cut(s) 405
BanI GGYRCC 2 cut(s) 490, 522
BanII GRGCYC 1 cut(s) 248
Bbv12I GWGCWC 2 cut(s) 174, 248
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 3 cut(s) 319, 322, 571
BccI CCATC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 2 cut(s) 495, 581
BcnI CCSGG 2 cut(s) 140, 154
BcoDI GTCTC 2 cut(s) 127, 693
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 3 cut(s) 261, 383, 512
BglI GCCNNNNNGGC 1 cut(s) 356
BisI GCNGC 6 cut(s) 114, 144, 333, 336, 489, 560
BlpI GCTNAGC 1 cut(s) 727
BlsI GCNGC 6 cut(s) 115, 145, 334, 337, 490, 561
Bme1390I CCNGG 4 cut(s) 140, 154, 495, 581
Bme18I GGWCC 3 cut(s) 67, 133, 423
BmeRI GACNNNNNGTC 1 cut(s) 49
BmeT110I CYCGRG 2 cut(s) 647, 662
BmgT120I GGNCC 6 cut(s) 67, 133, 145, 273, 318, 423
BmiI GGNNCC 3 cut(s) 274, 492, 524
BmrFI CCNGG 4 cut(s) 140, 154, 495, 581
BmsI GCATC 2 cut(s) 367, 368
BmtI GCTAGC 1 cut(s) 264
BoxI GACNNNNGTC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpmI CTGGAG 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 678
Bpu1102I GCTNAGC 1 cut(s) 727
BpuEI CTTGAG 2 cut(s) 324, 623
BpuMI CCSGG 2 cut(s) 140, 154
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 4 cut(s) 91, 108, 426, 814
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 153, 181, 708
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 1 cut(s) 689
Bse3DI GCAATG 3 cut(s) 554, 601, 804
BseBI CCWGG 2 cut(s) 495, 581
BseDI CCNNGG 4 cut(s) 91, 108, 426, 814
BseGI GGATG 3 cut(s) 162, 226, 359
BseLI CCNNNNNNNGG 4 cut(s) 142, 153, 181, 708
BseMI GCAATG 3 cut(s) 554, 601, 804
BseMII CTCAG 4 cut(s) 287, 305, 669, 741
BseNI ACTGG 1 cut(s) 689
BseRI GAGGAG 1 cut(s) 801
BseXI GCAGC 3 cut(s) 319, 322, 571
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 6 cut(s) 113, 146, 275, 320, 405, 712
BshNI GGYRCC 2 cut(s) 490, 522
BsiHKAI GWGCWC 2 cut(s) 174, 248
BsiHKCI CYCGRG 2 cut(s) 647, 662
BsiSI CCGG 4 cut(s) 139, 154, 175, 713
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 4 cut(s) 142, 153, 181, 708
BsmAI GTCTC 2 cut(s) 127, 693
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 6 cut(s) 113, 146, 275, 320, 405, 712
Bso31I GGTCTC 1 cut(s) 693
BsoBI CYCGRG 2 cut(s) 647, 662
Bsp1286I GDGCHC 2 cut(s) 174, 248
Bsp143I GATC 5 cut(s) 159, 412, 532, 810, 829
Bsp1720I GCTNAGC 1 cut(s) 727
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 4 cut(s) 114, 143, 182, 488
BspANI GGCC 6 cut(s) 113, 146, 275, 320, 405, 712
BspCNI CTCAG 4 cut(s) 288, 306, 670, 740
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 3 cut(s) 274, 492, 524
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 3 cut(s) 540, 805, 837
BspT107I GGYRCC 2 cut(s) 490, 522
BspTNI GGTCTC 1 cut(s) 693
BsrDI GCAATG 3 cut(s) 554, 601, 804
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 1 cut(s) 689
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 4 cut(s) 91, 108, 426, 814
BssMI GATC 5 cut(s) 159, 412, 532, 810, 829
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 3 cut(s) 108, 426, 814
Bst2UI CCWGG 2 cut(s) 495, 581
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 262, 714
BstDEI CTNAG 4 cut(s) 296, 314, 678, 727
BstDSI CCRYGG 2 cut(s) 91, 426
BstF5I GGATG 3 cut(s) 162, 226, 359
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 765
BstKTI GATC 5 cut(s) 162, 415, 535, 813, 832
BstMAI GTCTC 2 cut(s) 127, 693
BstMBI GATC 5 cut(s) 159, 412, 532, 810, 829
BstMWI GCNNNNNNNGC 4 cut(s) 317, 332, 356, 497
BstNI CCWGG 2 cut(s) 495, 581
BstNSI RCATGY 3 cut(s) 88, 448, 858
BstPAI GACNNNNGTC 1 cut(s) 198
BstSCI CCNGG 4 cut(s) 138, 152, 493, 579
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 319, 322, 571
BstX2I RGATCY 2 cut(s) 532, 829
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 2 cut(s) 532, 829
BsuRI GGCC 6 cut(s) 113, 146, 275, 320, 405, 712
BtgI CCRYGG 2 cut(s) 91, 426
BtsCI GGATG 3 cut(s) 162, 226, 359
BtsI GCAGTG 2 cut(s) 15, 723
BtsIMutI CAGTG 2 cut(s) 15, 723
Cac8I GCNNGC 2 cut(s) 262, 714
CaiI CAGNNNCTG 1 cut(s) 313
CfoI GCGC 1 cut(s) 765
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 6 cut(s) 67, 133, 145, 273, 318, 423
CseI GACGC 1 cut(s) 531
Csp6I GTAC 1 cut(s) 305
CviAII CATG 5 cut(s) 85, 427, 445, 519, 855
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 4 cut(s) 296, 314, 678, 727
DpnI GATC 5 cut(s) 161, 414, 534, 812, 831
DpnII GATC 5 cut(s) 159, 412, 532, 810, 829
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 2 cut(s) 403, 710
Eam1105I GACNNNNNGTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 246
Eco130I CCWWGG 3 cut(s) 108, 426, 814
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 693
Eco32I GATATC 2 cut(s) 254, 670
Eco47I GGWCC 3 cut(s) 67, 133, 423
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 2 cut(s) 647, 662
EcoICRI GAGCTC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 493, 579
EcoRV GATATC 2 cut(s) 254, 670
EcoT14I CCWWGG 3 cut(s) 108, 426, 814
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 3 cut(s) 108, 426, 814
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 5 cut(s) 88, 430, 448, 522, 858
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 734, 766
FaqI GGGAC 1 cut(s) 285
FatI CATG 5 cut(s) 84, 426, 444, 518, 854
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 6 cut(s) 114, 144, 333, 336, 489, 560
FokI GGATG 3 cut(s) 169, 233, 346
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 6 cut(s) 114, 144, 333, 336, 489, 560
FspBI CTAG 3 cut(s) 261, 383, 512
FspI TGCGCA 1 cut(s) 764
GlaI GCGC 1 cut(s) 764
GluI GCNGC 6 cut(s) 114, 144, 333, 336, 489, 560
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 6 cut(s) 113, 146, 275, 320, 405, 712
HapII CCGG 4 cut(s) 139, 154, 175, 713
HgaI GACGC 1 cut(s) 531
HhaI GCGC 1 cut(s) 765
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 5 cut(s) 88, 430, 448, 522, 858
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HinfI GANTC 5 cut(s) 47, 298, 650, 721, 819
HpaII CCGG 4 cut(s) 139, 154, 175, 713
Hpy188I TCNGA 5 cut(s) 133, 193, 297, 315, 547
Hpy188III TCNNGA 3 cut(s) 249, 398, 823
Hpy99I CGWCG 3 cut(s) 47, 122, 167
HpyAV CCTTC 2 cut(s) 16, 820
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 4 cut(s) 88, 282, 559, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 332, 356, 497
HpyF3I CTNAG 4 cut(s) 296, 314, 678, 727
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 5 cut(s) 88, 430, 448, 522, 858
HspAI GCGC 1 cut(s) 763
KroI GCCGGC 1 cut(s) 712
KroNI GCCGGC 1 cut(s) 714
Kzo9I GATC 5 cut(s) 159, 412, 532, 810, 829
LmnI GCTCC 7 cut(s) 13, 177, 243, 251, 497, 582, 788
Lsp1109I GCAGC 3 cut(s) 319, 322, 571
LweI GCATC 2 cut(s) 367, 368
MaeI CTAG 3 cut(s) 261, 383, 512
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 514
MalI GATC 5 cut(s) 161, 414, 534, 812, 831
MboI GATC 5 cut(s) 159, 412, 532, 810, 829
MboII GAAGA 2 cut(s) 31, 599
MfeI CAATTG 2 cut(s) 204, 277
MflI RGATCY 2 cut(s) 532, 829
MhlI GDGCHC 2 cut(s) 174, 248
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 4 cut(s) 204, 277, 407, 834
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 3 cut(s) 56, 307, 659
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 58, 80, 160, 233, 309, 647, 658, 673, 779
Mox20I TGGCCA 1 cut(s) 405
MroNI GCCGGC 1 cut(s) 712
MscI TGGCCA 1 cut(s) 405
MseI TTAA 2 cut(s) 741, 837
MslI CAYNNNNRTG 1 cut(s) 770
Msp20I TGGCCA 1 cut(s) 405
MspI CCGG 4 cut(s) 139, 154, 175, 713
MspR9I CCNGG 4 cut(s) 140, 154, 495, 581
MunI CAATTG 2 cut(s) 204, 277
MvaI CCWGG 2 cut(s) 495, 581
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 4 cut(s) 317, 332, 356, 497
NaeI GCCGGC 1 cut(s) 714
NciI CCSGG 2 cut(s) 140, 154
NcoI CCATGG 1 cut(s) 426
NdeII GATC 5 cut(s) 159, 412, 532, 810, 829
NgoMIV GCCGGC 1 cut(s) 712
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 5 cut(s) 88, 430, 448, 522, 858
NlaIV GGNNCC 3 cut(s) 274, 492, 524
NmeAIII GCCGAG 1 cut(s) 58
NsbI TGCGCA 1 cut(s) 764
NspI RCATGY 3 cut(s) 88, 448, 858
PaeR7I CTCGAG 2 cut(s) 647, 662
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 714
PfeI GAWTC 2 cut(s) 721, 819
PfoI TCCNGGA 1 cut(s) 579
PkrI GCNGC 6 cut(s) 115, 145, 334, 337, 490, 561
PleI GAGTC 3 cut(s) 55, 306, 658
PpsI GAGTC 3 cut(s) 55, 306, 658
PpuMI RGGWCCY 1 cut(s) 67
PshAI GACNNNNGTC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 493, 579
PspGI CCWGG 2 cut(s) 493, 579
PspN4I GGNNCC 3 cut(s) 274, 492, 524
PspPI GGNCC 6 cut(s) 67, 133, 145, 273, 318, 423
PspPPI RGGWCCY 1 cut(s) 67
PspXI VCTCGAGB 2 cut(s) 647, 662
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 2 cut(s) 532, 829
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 770
SacI GAGCTC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 741, 837
SatI GCNGC 6 cut(s) 114, 144, 333, 336, 489, 560
Sau3AI GATC 5 cut(s) 159, 412, 532, 810, 829
Sau96I GGNCC 6 cut(s) 67, 133, 145, 273, 318, 423
SchI GAGTC 3 cut(s) 56, 307, 659
ScrFI CCNGG 4 cut(s) 140, 154, 495, 581
SduI GDGCHC 2 cut(s) 174, 248
SetI ASST 9 cut(s) 18, 72, 123, 171, 248, 579, 639, 645, 868
SfaNI GCATC 2 cut(s) 367, 368
Sfr274I CTCGAG 2 cut(s) 647, 662
SinI GGWCC 3 cut(s) 67, 133, 423
SlaI CTCGAG 2 cut(s) 647, 662
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 4 cut(s) 339, 638, 647, 662
SmoI CTYRAG 4 cut(s) 339, 638, 647, 662
SpeI ACTAGT 1 cut(s) 511
Sse9I AATT 4 cut(s) 204, 277, 407, 834
SsiI CCGC 4 cut(s) 114, 143, 182, 488
SspMI CTAG 3 cut(s) 261, 383, 512
SstI GAGCTC 1 cut(s) 248
StyD4I CCNGG 4 cut(s) 138, 152, 493, 579
StyI CCWWGG 3 cut(s) 108, 426, 814
TaiI ACGT 1 cut(s) 123
TaqI TCGA 4 cut(s) 162, 481, 648, 663
TasI AATT 4 cut(s) 204, 277, 407, 834
TauI GCSGC 3 cut(s) 116, 146, 491
TfiI GAWTC 2 cut(s) 721, 819
Tru1I TTAA 2 cut(s) 741, 837
Tru9I TTAA 2 cut(s) 741, 837
TscAI CASTG 2 cut(s) 15, 723
TseI GCWGC 3 cut(s) 332, 335, 559
TspDTI ATGAA 1 cut(s) 788
TspGWI ACGGA 1 cut(s) 681
TspRI CASTG 2 cut(s) 15, 723
VpaK11BI GGWCC 3 cut(s) 67, 133, 423
XceI RCATGY 3 cut(s) 88, 448, 858
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XhoI CTCGAG 2 cut(s) 647, 662
XspI CTAG 3 cut(s) 261, 383, 512
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.