Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011804

Physical Location & Seq

Genomic Coordinates Reverse (-)

10790207 .. 10796867

Gene Structure 6661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3219 bp

ATGGCGGGAAATGACTGGGTGAACAGTTACTTAGAGGCCATTCTCGACGTCGGTCCCGGCCTCGACGACGCCAAATCGTCGTCGTCGCTGCTGCTCCGGGAACGAGGTCGTTTCAGTCCCACTCGTTACTTCGTCGAAGAGGTCATCACTCGCTACGATGAGACTGATCTCCACCGCTCCTGGGTTCGAGCTGCGGCGACGGCGAGGAGCGCCGAGGAGAGGAACACCAGGCTGGAGAACATGTGCTGGCGGATTTGGAATCTTGCTCGCAAAAAGAAGCAGCTTGAGGGAGAAGAAGCTCAACGAACAGCGAGGCGTCGGGATGAGCGTGAAAGGGGAAGGAGAGAGGCAACTGAGGACATGTCAGAAGACTTATCTGAAGGAGAGAGTAGAGACACAGTTGGTGATATTTCAGCTCATAATAGTGATAGCACTAGAGGAGGAAGAATGCGTAGAATCAATTCTATGGATGTGATGGAGAACTGGGCTGCTCATCAAAAGGAAAAGAAATTCTACATTACGATGCATATGACATATCTTGCACTCTTGATACCTCTTGATGCTTTAGTTTCTAACAAACAGTCTTCATGCAGCCTCCATGGCTTGATACGCGGTGAAAACATGGAGCTTGGTCGTGATTCTGATACAGGTGGCCAGGTCAAGTATGTTGTGGAACTTGCCAGGGCCTTGGGTTCAATGCCTGGAGTTTATCGCGTTGATTTACTAACAAGACAAGTTTCAGCTCCAGATGTGGATTGGAGTTATGGGGAACCAACTGAAATGTTGAATCCAGTAAACTCTGAGAATCCACAAGAGGAGCTTGGGGAGAGCACTGGGGCTTATATAGTGCGTATACCATTTGGCCCAAAAGATAAATACATTCCAAAAGAACTCCTTTGGCCACACATTCCTGAGTTTGTAGACGGAGCACTTAACCATATTATACAGTTGTCCAAAGCTCTTGGAGAGCAAATTGGAGGTGGGGAACCGGTGTGGCCAGTGGCAATTCATGGACACTATGCAGATGCAGGTGACTCTGCTGCTCTTCTGTCTGGAGCCTTGAATGTCCCAATGTTATTTACTGGTCACTCACTTGGACGAGATAAGCTTGAGCAACTTTTGAAACAAGGACGCCAATCAAGAGAAGAAATAAATACGACATACAAAATTATGAGGAGGATAGAAGCAGAGGAACTATCACTTGACGCCTCTGAGATTGTTATAACCAGCACTAGACAGGAAATAGACTCACAATGGCGCTTGTATGATGGCTTTGATCCAATACTAGAACGTAAACTGCGAGCAAGAATCAAAAGGGGCGTTAGCTGTCATGGCAGGTTTATGCCTCGCACGGTTGTAATACCTCCTGGAATGGAATTTCATCATATTATTCCACCTGCAGATGGTGATGCAGATGGGGAAGGGGAAAGAAATGATGATAATACTGCTAATCCTGACCTGCCAATTTGGTCAGAGATTATGCGTTTCTTTACCAACCCGCGCAAGCCTATGATACTTGCTCTTGCCAGGGCAGATCCTAAGAAGAATATTACGACTTTAGTTAAAGCATTTGGAGAGTGTCGCCCTTTGAGGGATCTTTCTAACCTCCTGATTGACAGATATGATCTGTATGGTCATGTGGCATATCCGAAACACCACAAGCAGTCTGATGTTCCTGACATCTATCGTCTAGCAGCAAAAACAAAGGAGTGGTTGTGCAAGAGGAGAACTACAGAGCTAAAGCTCCTCGATGATGTGGGTGTTTTTATCAATCCAGCTTTCATTGAGCCATTTGGGCTTACTTTAATAGAGGCAGCAGCTCATGGCTTACCTATTGTTGCCACAAAAAATGGGGGTCCTGTTGATATACATCGGGCTCTTGATAATGGTCTGCTAGTTGACCCCCATGATCAGCAGTCAATTGCTGATGCCCTTCTGAACCTCGTTTCGGATAAGCATCTTTGGGCAAGATGCAGGCAGAATGGACTGAAAAACATTCACCTTTTCTCATGGCCAGAGCATTGTAAGACCTACTTATCTCGCATAACCAGTTGCAAACCAAGGCAGCCACAATGGCGAAGAACTGCCGCTGAAATTGATTCTTCAGGATCAGATTCACCTGGTGATTCCTTAAGGGATATACAAGATATATCTTTGAACTTGAAGCTCTCTTTGGATGGTGAGAAAATTGAAGGGGCTGGATCTCTTGATAATGCTTTAGATAATGATGCCGCTGAAGGAAAAGTAAAAGAAGAGAACGCGGTTTTGACAATGTCAAAGGGTGTTCTAGAGGGCTGTCAAAAGGCTGGTGCCACAGAGAAAGAAGAGAACACTGGGGCTGGTAAATTTCCTGCACTGAGGAAAAGGAAGCATGTATTTGTAATTGCTGTGGATTGTGATACAACCTCAGAGTTCAGTGAAATTGTTGAAAAGGTTATTGAGACAGTATCAAAGGAAAAGGACGCAGGACCTATAGGATTCATACTGTCAACAGCCTATCCCATATCAGAGATACAGTCTCTTTTGGTCTCAGGGGGTTTGAGCCCATCACAGTTTGATGGTTTTATCTGCAGCAGTGGTGGTGAGCTCTACTATCCATCGTCAAGCTCTGAGGATAGTCCTTCTGGGCTTCCCTTTGTGGTAGACTTGGATTATCGTTCACACACTGAATACCGTTGGGGTGGAGACGGTTTGAGAAAGACTTTGGTTCGTTGGGTCGCTTCTTTCAATGAGAAAAAAGGAGACGGACAAGTCGCAGCAGATGAATCAGGAACAACTAAGCATTGCTATGCGTTTAATGTGAAGGATCCAGCAGTGATTCCCCCTGTTAAGGAACTCCGGAAAATGATGAGAATTCAGGCTCTTCGATGCAATGTTGTATATTCTCAGAATGGTACGAGGCTGAAGGTCATCCCTGTGTTGGCTTCTAGATCACAAGCCCTCAGGTATCTGTATGTCCGTTGGGGATTGGACTTGTCAAACATTGTTGCCTTTATGGGAGAACTAGGTGACACAGATTACGAAGGCTTGCTTGGTGGTGTACACAAGACTGTTATATTGAAGGGAGTAGGTACCAATGCTCATAAGCTTCATGCTAACCGGAACTTTCCTTTGGAACATGTCCTTCCAGTCGACAATCCCAATGTTGTACAAAGTGAAGGATGCTCTGATAAAGACATTCGAGCATCACTGGTGAAACTAAGGATTCTCAAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

1072

Amino Acids

119.57

Weight (kDa)

6.13

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	198 - 418	1.8e-07	Sucrose synthase first GT-B domain
Glycos_transf_1	PF00534	499 - 663	1.2e-18	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	503 - 651	2.6e-14	Glycosyl transferases group 1
S6PP	PF05116	814 - 1005	2.6e-10	Sucrose-6F-phosphate phosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11110
fragaria_vesca	FvH4_2g28820 FvH4_2g28820
malus_domestica	MD08G1157000.v1.1 MD15G1127900.v1.1
prunus_persica	Prupe.1G483200_v2.0.a1 Prupe.1G483200_v2.0.a1
pyrus_communis	pycom08g12930 pycom15g11500
rosa_chinensis	RchiOBHm_Chr6g0297571
rosa_laevigata	RLG00000011582
rosa_roxburghii	Rroxscaffold_7G00170350
rosa_rugosa	Rorug06G0273700 Rorug06G0273800 Rorug06G0273800
rosa_samantha	Rh6BG392800 Rh6CG398600 Rh6DG385200
rosa_wichuraiana	Rw6G033510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1223
AarI	CACCTGC	2 cut(s)	1019, 1405
AasI	GACNNNNNNGTC	1 cut(s)	2750
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	4 cut(s)	1019, 1326, 1405, 1467
Acc65I	GGTACC	1 cut(s)	3071
AccB1I	GGYRCC	2 cut(s)	2309, 3071
AccBSI	CCGCTC	1 cut(s)	177
AccI	GTMKAC	4 cut(s)	853, 921, 2643, 3132
AccII	CGCG	4 cut(s)	612, 714, 1501, 2261
AccIII	TCCGGA	1 cut(s)	2838
AciI	CCGC	9 cut(s)	5, 175, 194, 250, 612, 1499, 2088, 2232, 2261
AclWI	GGATC	7 cut(s)	1271, 1529, 1602, 2116, 2209, 2801, 2814
AcoI	YGGCCR	4 cut(s)	652, 899, 995, 2012
AcsI	RAATTY	4 cut(s)	509, 1376, 2345, 2853
AcuI	CTGAAG	4 cut(s)	399, 2088, 2256, 2924
AcyI	GRCGYC	5 cut(s)	48, 69, 316, 1132, 1206
AdeI	CACNNNGTG	1 cut(s)	2123
AfaI	GTAC	4 cut(s)	2896, 3042, 3073, 3150
AfiI	CCNNNNNNNGG	7 cut(s)	181, 219, 1403, 1591, 1948, 2830, 2920
AflII	CTTAAG	1 cut(s)	2131
AflIII	ACRYGT	3 cut(s)	240, 360, 3118
AgeI	ACCGGT	1 cut(s)	988
AjnI	CCWGG	8 cut(s)	179, 227, 654, 680, 700, 1366, 1526, 2119
AjuI	GAANNNNNNNTTGG	6 cut(s)	2156, 2188, 3015, 3047, 3095, 3127
Alw21I	GWGCWC	3 cut(s)	833, 931, 2589
Alw26I	GTCTC	7 cut(s)	155, 387, 2435, 2523, 2533, 2679, 2736
AlwI	GGATC	7 cut(s)	1271, 1529, 1602, 2116, 2209, 2801, 2814
Aor13HI	TCCGGA	1 cut(s)	2838
AoxI	GGCC	8 cut(s)	36, 58, 652, 684, 862, 899, 995, 2012
ApoI	RAATTY	4 cut(s)	509, 1376, 2345, 2853
AsiGI	ACCGGT	1 cut(s)	988
Asp700I	GAANNNNTTC	1 cut(s)	460
Asp718I	GGTACC	1 cut(s)	3071
AspLEI	GCGC	3 cut(s)	212, 1260, 1503
AspS9I	GGNCC	5 cut(s)	53, 684, 863, 1856, 2468
AsuC2I	CCSGG	2 cut(s)	57, 98
AvaII	GGWCC	3 cut(s)	53, 1856, 2468
AxyI	CCTNAGG	1 cut(s)	2942
BalI	TGGCCA	4 cut(s)	654, 901, 997, 2014
BamHI	GGATCC	1 cut(s)	2806
BanI	GGYRCC	2 cut(s)	2309, 3071
BanII	GRGCYC	3 cut(s)	1879, 2546, 2589
BbsI	GAAGAC	2 cut(s)	375, 576
Bbv12I	GWGCWC	3 cut(s)	833, 931, 2589
BccI	CCATC	8 cut(s)	469, 1262, 1397, 1409, 2171, 2552, 2554, 2605
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	8 cut(s)	181, 229, 656, 682, 702, 1368, 1528, 2121
BclI	TGATCA	1 cut(s)	1909
BcnI	CCSGG	2 cut(s)	57, 98
BcoDI	GTCTC	7 cut(s)	155, 387, 2435, 2523, 2533, 2679, 2736
BfaI	CTAG	8 cut(s)	435, 1233, 1286, 1691, 1895, 2288, 2928, 3005
BfmI	CTRYAG	4 cut(s)	1398, 1731, 2472, 2569
BfoI	RGCGCY	2 cut(s)	213, 1261
BfrI	CTTAAG	1 cut(s)	2131
BfuAI	ACCTGC	4 cut(s)	1019, 1326, 1405, 1467
BglI	GCCNNNNNGGC	3 cut(s)	600, 1795, 2074
Bme18I	GGWCC	3 cut(s)	53, 1856, 2468
BmgT120I	GGNCC	5 cut(s)	53, 684, 863, 1856, 2468
BmiI	GGNNCC	8 cut(s)	55, 771, 987, 1057, 1857, 2311, 2808, 3073
BmrI	ACTGGG	4 cut(s)	25, 493, 843, 2343
BmuI	ACTGGG	4 cut(s)	25, 493, 843, 2343
BoxI	GACNNNNGTC	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	375, 576
BpmI	CTGGAG	4 cut(s)	254, 723, 729, 1074
BpuEI	CTTGAG	3 cut(s)	305, 1130, 3194
BpuMI	CCSGG	2 cut(s)	57, 98
BsaBI	GATNNNNATC	2 cut(s)	1869, 1956
BsaHI	GRCGYC	5 cut(s)	48, 69, 316, 1132, 1206
BsaI	GGTCTC	1 cut(s)	2533
BsaJI	CCNNGG	7 cut(s)	180, 213, 598, 681, 687, 1527, 2060
BsaWI	WCCGGW	3 cut(s)	988, 2838, 3099
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 1700, 1730
Bsc4I	CCNNNNNNNGG	7 cut(s)	181, 219, 1403, 1591, 1948, 2830, 2920
Bse118I	RCCGGY	1 cut(s)	988
Bse21I	CCTNAGG	1 cut(s)	2942
Bse3DI	GCAATG	2 cut(s)	2782, 2878
Bse8I	GATNNNNATC	2 cut(s)	1869, 1956
BseAI	TCCGGA	1 cut(s)	2838
BseBI	CCWGG	8 cut(s)	181, 229, 656, 682, 702, 1368, 1528, 2121
BseDI	CCNNGG	7 cut(s)	180, 213, 598, 681, 687, 1527, 2060
BseGI	GGATG	5 cut(s)	328, 475, 2182, 2910, 3167
BseJI	GATNNNNATC	2 cut(s)	1869, 1956
BseLI	CCNNNNNNNGG	7 cut(s)	181, 219, 1403, 1591, 1948, 2830, 2920
BseMI	GCAATG	2 cut(s)	2782, 2878
BseRI	GAGGAG	7 cut(s)	220, 230, 453, 830, 1189, 1736, 1738
BsgI	GTGCAG	1 cut(s)	2337
Bsh1236I	CGCG	4 cut(s)	612, 714, 1501, 2261
BshFI	GGCC	8 cut(s)	38, 60, 654, 686, 864, 901, 997, 2014
BshNI	GGYRCC	2 cut(s)	2309, 3071
BshTI	ACCGGT	1 cut(s)	988
BsiHKAI	GWGCWC	3 cut(s)	833, 931, 2589
BsiSI	CCGG	5 cut(s)	57, 97, 989, 2839, 3100
BslFI	GGGAC	3 cut(s)	39, 102, 1052
BslI	CCNNNNNNNGG	7 cut(s)	181, 219, 1403, 1591, 1948, 2830, 2920
BsmAI	GTCTC	7 cut(s)	155, 387, 2435, 2523, 2533, 2679, 2736
BsmBI	CGTCTC	2 cut(s)	2679, 2736
BsmFI	GGGAC	3 cut(s)	39, 102, 1052
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	8 cut(s)	38, 60, 654, 686, 864, 901, 997, 2014
Bso31I	GGTCTC	1 cut(s)	2533
Bsp1286I	GDGCHC	5 cut(s)	833, 931, 1879, 2546, 2589
Bsp13I	TCCGGA	1 cut(s)	2838
Bsp1407I	TGTACA	2 cut(s)	3040, 3148
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	9 cut(s)	5, 175, 194, 250, 612, 1499, 2088, 2232, 2261
BspANI	GGCC	8 cut(s)	38, 60, 654, 686, 864, 901, 997, 2014
BspEI	TCCGGA	1 cut(s)	2838
BspFNI	CGCG	4 cut(s)	612, 714, 1501, 2261
BspLI	GGNNCC	8 cut(s)	55, 771, 987, 1057, 1857, 2311, 2808, 3073
BspMAI	CTGCAG	2 cut(s)	1402, 2573
BspMI	ACCTGC	4 cut(s)	1019, 1326, 1405, 1467
BspPI	GGATC	7 cut(s)	1271, 1529, 1602, 2116, 2209, 2801, 2814
BspQI	GCTCTTC	2 cut(s)	1050, 2868
BspT107I	GGYRCC	2 cut(s)	2309, 3071
BspTI	CTTAAG	1 cut(s)	2131
BspTNI	GGTCTC	1 cut(s)	2533
BsrBI	CCGCTC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	2782, 2878
BsrFI	RCCGGY	1 cut(s)	988
BsrGI	TGTACA	2 cut(s)	3040, 3148
BssAI	RCCGGY	1 cut(s)	988
BssECI	CCNNGG	7 cut(s)	180, 213, 598, 681, 687, 1527, 2060
BssNAI	GTATAC	1 cut(s)	854
BssNI	GRCGYC	5 cut(s)	48, 69, 316, 1132, 1206
BssT1I	CCWWGG	3 cut(s)	598, 687, 2060
Bst1107I	GTATAC	1 cut(s)	854
Bst2UI	CCWGG	8 cut(s)	181, 229, 656, 682, 702, 1368, 1528, 2121
Bst6I	CTCTTC	5 cut(s)	132, 1050, 2247, 2319, 2868
BstACI	GRCGYC	5 cut(s)	48, 69, 316, 1132, 1206
BstAFI	CTTAAG	1 cut(s)	2131
BstAUI	TGTACA	2 cut(s)	3040, 3148
BstC8I	GCNNGC	6 cut(s)	248, 268, 1302, 1505, 1976, 3029
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	5 cut(s)	328, 475, 2182, 2910, 3167
BstFNI	CGCG	4 cut(s)	612, 714, 1501, 2261
BstH2I	RGCGCY	2 cut(s)	213, 1261
BstHHI	GCGC	3 cut(s)	212, 1260, 1503
BstMAI	GTCTC	7 cut(s)	155, 387, 2435, 2523, 2533, 2679, 2736
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 209, 600, 609, 1332, 1795, 2074
BstNI	CCWGG	8 cut(s)	181, 229, 656, 682, 702, 1368, 1528, 2121
BstNSI	RCATGY	4 cut(s)	244, 364, 2375, 3122
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSFI	CTRYAG	4 cut(s)	1398, 1731, 2472, 2569
BstUI	CGCG	4 cut(s)	612, 714, 1501, 2261
BstV2I	GAAGAC	2 cut(s)	375, 576
BstX2I	RGATCY	4 cut(s)	1534, 1594, 2201, 2806
BstXI	CCANNNNNNTGG	1 cut(s)	688
BstYI	RGATCY	4 cut(s)	1534, 1594, 2201, 2806
BstZ17I	GTATAC	1 cut(s)	854
Bsu36I	CCTNAGG	1 cut(s)	2942
BsuRI	GGCC	8 cut(s)	38, 60, 654, 686, 864, 901, 997, 2014
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	5 cut(s)	328, 475, 2182, 2910, 3167
BtsI	GCAGTG	2 cut(s)	2581, 2820
BtsIMutI	CAGTG	9 cut(s)	831, 1005, 2331, 2354, 2422, 2581, 2664, 2820, 3188
BveI	ACCTGC	4 cut(s)	1019, 1326, 1405, 1467
Cac8I	GCNNGC	6 cut(s)	248, 268, 1302, 1505, 1976, 3029
CfoI	GCGC	3 cut(s)	212, 1260, 1503
Cfr10I	RCCGGY	1 cut(s)	988
Cfr13I	GGNCC	5 cut(s)	53, 684, 863, 1856, 2468
CseI	GACGC	5 cut(s)	77, 305, 1140, 1214, 2471
CsiI	ACCWGGT	1 cut(s)	2119
Csp6I	GTAC	4 cut(s)	2895, 3041, 3072, 3149
CspAI	ACCGGT	1 cut(s)	988
CviQI	GTAC	4 cut(s)	2895, 3041, 3072, 3149
DraIII	CACNNNGTG	1 cut(s)	2123
DrdI	GACNNNNNNGTC	1 cut(s)	2750
DseDI	GACNNNNNNGTC	1 cut(s)	2750
EaeI	YGGCCR	4 cut(s)	652, 899, 995, 2012
Eam1104I	CTCTTC	5 cut(s)	132, 1050, 2247, 2319, 2868
EarI	CTCTTC	5 cut(s)	132, 1050, 2247, 2319, 2868
EciI	GGCGGA	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	2587
Eco130I	CCWWGG	3 cut(s)	598, 687, 2060
Eco24I	GRGCYC	3 cut(s)	1879, 2546, 2589
Eco31I	GGTCTC	1 cut(s)	2533
Eco47I	GGWCC	3 cut(s)	53, 1856, 2468
Eco53kI	GAGCTC	1 cut(s)	2587
Eco57I	CTGAAG	4 cut(s)	399, 2088, 2256, 2924
Eco81I	CCTNAGG	1 cut(s)	2942
EcoICRI	GAGCTC	1 cut(s)	2587
EcoO109I	RGGNCCY	3 cut(s)	684, 1856, 2468
EcoRI	GAATTC	1 cut(s)	2853
EcoRII	CCWGG	8 cut(s)	179, 227, 654, 680, 700, 1366, 1526, 2119
EcoT14I	CCWWGG	3 cut(s)	598, 687, 2060
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	3 cut(s)	1879, 2546, 2589
ErhI	CCWWGG	3 cut(s)	598, 687, 2060
Esp3I	CGTCTC	2 cut(s)	2679, 2736
FalI	AAGNNNNNCTT	8 cut(s)	804, 836, 879, 911, 2018, 2050, 3015, 3047
FaqI	GGGAC	3 cut(s)	39, 102, 1052
FauI	CCCGC	1 cut(s)	1506
FauNDI	CATATG	1 cut(s)	528
FbaI	TGATCA	1 cut(s)	1909
FblI	GTMKAC	4 cut(s)	853, 921, 2643, 3132
FokI	GGATG	5 cut(s)	335, 482, 2189, 2897, 3174
FriOI	GRGCYC	3 cut(s)	1879, 2546, 2589
FspBI	CTAG	8 cut(s)	435, 1233, 1286, 1691, 1895, 2288, 2928, 3005
GlaI	GCGC	3 cut(s)	211, 1259, 1502
GsuI	CTGGAG	4 cut(s)	254, 723, 729, 1074
HaeII	RGCGCY	2 cut(s)	213, 1261
HaeIII	GGCC	8 cut(s)	38, 60, 654, 686, 864, 901, 997, 2014
HapII	CCGG	5 cut(s)	57, 97, 989, 2839, 3100
HgaI	GACGC	5 cut(s)	77, 305, 1140, 1214, 2471
HhaI	GCGC	3 cut(s)	212, 1260, 1503
Hin1I	GRCGYC	5 cut(s)	48, 69, 316, 1132, 1206
Hin6I	GCGC	3 cut(s)	210, 1258, 1501
HinP1I	GCGC	3 cut(s)	210, 1258, 1501
HincII	GTYRAC	3 cut(s)	1900, 2490, 3133
HindII	GTYRAC	3 cut(s)	1900, 2490, 3133
HindIII	AAGCTT	2 cut(s)	1106, 3086
HpaII	CCGG	5 cut(s)	57, 97, 989, 2839, 3100
HpyCH4IV	ACGT	2 cut(s)	48, 1291
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 209, 600, 609, 1332, 1795, 2074
HpySE526I	ACGT	2 cut(s)	48, 1291
Hsp92I	GRCGYC	5 cut(s)	48, 69, 316, 1132, 1206
HspAI	GCGC	3 cut(s)	210, 1258, 1501
Kpn2I	TCCGGA	1 cut(s)	2838
KpnI	GGTACC	1 cut(s)	3075
Ksp22I	TGATCA	1 cut(s)	1909
LguI	GCTCTTC	2 cut(s)	1050, 2868
LmnI	GCTCC	9 cut(s)	99, 182, 207, 625, 748, 817, 926, 1055, 1749
MabI	ACCWGGT	1 cut(s)	2119
MaeI	CTAG	8 cut(s)	435, 1233, 1286, 1691, 1895, 2288, 2928, 3005
MaeII	ACGT	2 cut(s)	48, 1291
MaeIII	GTNAC	5 cut(s)	26, 125, 1031, 1085, 3008
MbiI	CCGCTC	1 cut(s)	177
MfeI	CAATTG	1 cut(s)	1920
MflI	RGATCY	4 cut(s)	1534, 1594, 2201, 2806
MhlI	GDGCHC	5 cut(s)	833, 931, 1879, 2546, 2589
MlsI	TGGCCA	4 cut(s)	654, 901, 997, 2014
MluNI	TGGCCA	4 cut(s)	654, 901, 997, 2014
MlyI	GAGTC	2 cut(s)	1028, 1241
Mox20I	TGGCCA	4 cut(s)	654, 901, 997, 2014
Mph1103I	ATGCAT	1 cut(s)	528
MroI	TCCGGA	1 cut(s)	2838
MroXI	GAANNNNTTC	1 cut(s)	460
MscI	TGGCCA	4 cut(s)	654, 901, 997, 2014
MseI	TTAA	6 cut(s)	933, 1563, 1805, 2132, 2796, 2829
MslI	CAYNNNNRTG	4 cut(s)	423, 521, 2787, 2915
Msp20I	TGGCCA	4 cut(s)	654, 901, 997, 2014
MspA1I	CMGCKG	2 cut(s)	2090, 2234
MspCI	CTTAAG	1 cut(s)	2131
MspI	CCGG	5 cut(s)	57, 97, 989, 2839, 3100
MunI	CAATTG	1 cut(s)	1920
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	8 cut(s)	181, 229, 656, 682, 702, 1368, 1528, 2121
MvnI	CGCG	4 cut(s)	612, 714, 1501, 2261
MwoI	GCNNNNNNNGC	7 cut(s)	200, 209, 600, 609, 1332, 1795, 2074
NciI	CCSGG	2 cut(s)	57, 98
NcoI	CCATGG	1 cut(s)	598
NdeI	CATATG	1 cut(s)	528
NlaIV	GGNNCC	8 cut(s)	55, 771, 987, 1057, 1857, 2311, 2808, 3073
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	3 cut(s)	1031, 1085, 3008
NsiI	ATGCAT	1 cut(s)	528
NspI	RCATGY	4 cut(s)	244, 364, 2375, 3122
PaqCI	CACCTGC	2 cut(s)	1019, 1405
PciI	ACATGT	3 cut(s)	240, 360, 3118
PciSI	GCTCTTC	2 cut(s)	1050, 2868
PcsI	WCGNNNNNNNCGW	2 cut(s)	325, 1297
PctI	GAATGC	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	460
PflFI	GACNNNGTC	1 cut(s)	2272
PfoI	TCCNGGA	2 cut(s)	96, 1366
PinAI	ACCGGT	1 cut(s)	988
PleI	GAGTC	2 cut(s)	1028, 1241
PpsI	GAGTC	2 cut(s)	1028, 1241
PpuMI	RGGWCCY	2 cut(s)	1856, 2468
PscI	ACATGT	3 cut(s)	240, 360, 3118
PshAI	GACNNNNGTC	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	1223
Psp124BI	GAGCTC	1 cut(s)	2589
Psp5II	RGGWCCY	2 cut(s)	1856, 2468
Psp6I	CCWGG	8 cut(s)	179, 227, 654, 680, 700, 1366, 1526, 2119
PspGI	CCWGG	8 cut(s)	179, 227, 654, 680, 700, 1366, 1526, 2119
PspN4I	GGNNCC	8 cut(s)	55, 771, 987, 1057, 1857, 2311, 2808, 3073
PspPI	GGNCC	5 cut(s)	53, 684, 863, 1856, 2468
PspPPI	RGGWCCY	2 cut(s)	1856, 2468
PstI	CTGCAG	2 cut(s)	1402, 2573
PsuI	RGATCY	4 cut(s)	1534, 1594, 2201, 2806
PsyI	GACNNNGTC	1 cut(s)	2272
RsaI	GTAC	4 cut(s)	2896, 3042, 3073, 3150
RsaNI	GTAC	4 cut(s)	2895, 3041, 3072, 3149
RseI	CAYNNNNRTG	4 cut(s)	423, 521, 2787, 2915
SacI	GAGCTC	1 cut(s)	2589
SalI	GTCGAC	1 cut(s)	3131
SapI	GCTCTTC	2 cut(s)	1050, 2868
SaqAI	TTAA	6 cut(s)	933, 1563, 1805, 2132, 2796, 2829
Sau96I	GGNCC	5 cut(s)	53, 684, 863, 1856, 2468
SchI	GAGTC	2 cut(s)	1028, 1241
SduI	GDGCHC	5 cut(s)	833, 931, 1879, 2546, 2589
SexAI	ACCWGGT	1 cut(s)	2119
SfcI	CTRYAG	4 cut(s)	1398, 1731, 2472, 2569
SinI	GGWCC	3 cut(s)	53, 1856, 2468
SmiMI	CAYNNNNRTG	4 cut(s)	423, 521, 2787, 2915
SmlI	CTYRAG	4 cut(s)	284, 1109, 2131, 3209
SmoI	CTYRAG	4 cut(s)	284, 1109, 2131, 3209
SsiI	CCGC	9 cut(s)	5, 175, 194, 250, 612, 1499, 2088, 2232, 2261
SspI	AATATT	1 cut(s)	1549
SspMI	CTAG	8 cut(s)	435, 1233, 1286, 1691, 1895, 2288, 2928, 3005
SstI	GAGCTC	1 cut(s)	2589
StyI	CCWWGG	3 cut(s)	598, 687, 2060
TaiI	ACGT	2 cut(s)	51, 1294
TaqI	TCGA	8 cut(s)	45, 63, 135, 187, 1749, 2866, 3132, 3181
TaqII	GACCGA	1 cut(s)	41
TatI	WGTACW	2 cut(s)	3040, 3148
TauI	GCSGC	3 cut(s)	197, 2090, 2234
Tru1I	TTAA	6 cut(s)	933, 1563, 1805, 2132, 2796, 2829
Tru9I	TTAA	6 cut(s)	933, 1563, 1805, 2132, 2796, 2829
TscAI	CASTG	9 cut(s)	838, 1005, 2338, 2361, 2422, 2581, 2671, 2820, 3195
TseFI	GTSAC	3 cut(s)	1031, 1085, 3008
Tsp45I	GTSAC	3 cut(s)	1031, 1085, 3008
TspDTI	ATGAA	7 cut(s)	576, 998, 1370, 1771, 2470, 2778, 3080
TspGWI	ACGGA	3 cut(s)	939, 2760, 2948
TspRI	CASTG	9 cut(s)	838, 1005, 2338, 2361, 2422, 2581, 2671, 2820, 3195
Tth111I	GACNNNGTC	1 cut(s)	2272
Vha464I	CTTAAG	1 cut(s)	2131
VpaK11BI	GGWCC	3 cut(s)	53, 1856, 2468
XapI	RAATTY	4 cut(s)	509, 1376, 2345, 2853
XbaI	TCTAGA	2 cut(s)	2287, 2927
XceI	RCATGY	4 cut(s)	244, 364, 2375, 3122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmiI	GTMKAC	4 cut(s)	853, 921, 2643, 3132
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	8 cut(s)	435, 1233, 1286, 1691, 1895, 2288, 2928, 3005
ZraI	GACGTC	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.