Rorug06G0273700

Belongs to the glycosyltransferase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
42097402 .. 42097908
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0273700.1

Sequence Viewer

Length: 384 bp
ATGAAAACAGTTGCTATGGAGAAAGCAAAGGCATTGCTCATTGTCACACTACTCCTTATGACATTTCTGGTGGGTTCTGAAGCTGCAGGAAGGGAGTTGAAACCGAAAGAGGAGGTCTATACCCCTCAATGGTTCTGGGGATGGGGATTTCCTTGGTGGGGGCTCGGACATGGATTTGGGTGGGGATTTCATCCTTGGCTCGGTGGCTTAAACCATGGGCTTAAGGACGCTCCACATGGCTATGGTGGGAAAGGTGACATTCCTTATGATCATAACAAAGGCAATGGCAAAGGCGATGGCGATGGCAATGGCAATGGCGAGAAAGGTGACATTCCTGATCATGGAGGCGATGATCAAAACGGAGATGGTGGCAAGTATCCATAG

Protein Analysis

127

Amino Acids

13.69

Weight (kDa)

5.8

Isoelectric Point (pI)

5.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011804)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 99
AfiI CCNNNNNNNGG 4 cut(s) 129, 158, 200, 341
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 266, 338
BanII GRGCYC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 70
BccI CCATC 4 cut(s) 135, 290, 296, 359
BclI TGATCA 3 cut(s) 268, 337, 352
BfmI CTRYAG 1 cut(s) 84
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 152, 194, 214
Bsc4I CCNNNNNNNGG 4 cut(s) 129, 158, 200, 341
Bse3DI GCAATG 4 cut(s) 32, 289, 313, 319
BseDI CCNNGG 3 cut(s) 152, 194, 214
BseGI GGATG 2 cut(s) 146, 190
BseLI CCNNNNNNNGG 4 cut(s) 129, 158, 200, 341
BseMI GCAATG 4 cut(s) 32, 289, 313, 319
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 70
BslI CCNNNNNNNGG 4 cut(s) 129, 158, 200, 341
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 3 cut(s) 268, 337, 352
Bsp19I CCATGG 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 88
BspTI CTTAAG 1 cut(s) 221
BsrDI GCAATG 4 cut(s) 32, 289, 313, 319
BssECI CCNNGG 3 cut(s) 152, 194, 214
BssMI GATC 3 cut(s) 268, 337, 352
BssT1I CCWWGG 3 cut(s) 152, 194, 214
Bst4CI ACNGT 1 cut(s) 10
BstAFI CTTAAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 146, 190
BstKTI GATC 3 cut(s) 271, 340, 355
BstMBI GATC 3 cut(s) 268, 337, 352
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 214
BtgZI GCGATG 3 cut(s) 309, 315, 363
BtsCI GGATG 2 cut(s) 146, 190
CseI GACGC 1 cut(s) 236
CviAII CATG 4 cut(s) 170, 215, 236, 341
CviJI RGCY 6 cut(s) 83, 163, 199, 207, 220, 240
CviKI_1 RGCY 6 cut(s) 83, 163, 199, 207, 220, 240
DpnI GATC 3 cut(s) 270, 339, 354
DpnII GATC 3 cut(s) 268, 337, 352
Eco130I CCWWGG 3 cut(s) 152, 194, 214
Eco24I GRGCYC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 99
EcoT14I CCWWGG 3 cut(s) 152, 194, 214
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 3 cut(s) 152, 194, 214
FaeI CATG 4 cut(s) 173, 218, 239, 344
FatI CATG 4 cut(s) 169, 214, 235, 340
FbaI TGATCA 3 cut(s) 268, 337, 352
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 153, 177
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
HgaI GACGC 1 cut(s) 236
Hin1II CATG 4 cut(s) 173, 218, 239, 344
HphI GGTGA 2 cut(s) 266, 338
Hpy188I TCNGA 2 cut(s) 79, 167
Hpy188III TCNNGA 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 86
Hsp92II CATG 4 cut(s) 173, 218, 239, 344
Ksp22I TGATCA 3 cut(s) 268, 337, 352
Kzo9I GATC 3 cut(s) 268, 337, 352
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 4 cut(s) 53, 72, 121, 348
Lsp1109I GCAGC 1 cut(s) 70
MaeIII GTNAC 3 cut(s) 43, 254, 326
MalI GATC 3 cut(s) 270, 339, 354
MboI GATC 3 cut(s) 268, 337, 352
MhlI GDGCHC 1 cut(s) 165
MnlI CCTC 4 cut(s) 103, 106, 135, 338
MseI TTAA 2 cut(s) 209, 222
MslI CAYNNNNRTG 1 cut(s) 240
MspCI CTTAAG 1 cut(s) 221
NcoI CCATGG 1 cut(s) 214
NdeII GATC 3 cut(s) 268, 337, 352
NlaIII CATG 4 cut(s) 173, 218, 239, 344
NmuCI GTSAC 3 cut(s) 43, 254, 326
PkrI GCNGC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 2 cut(s) 209, 222
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 268, 337, 352
SduI GDGCHC 1 cut(s) 165
SetI ASST 4 cut(s) 85, 117, 256, 328
SfcI CTRYAG 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
StyI CCWWGG 3 cut(s) 152, 194, 214
TaaI ACNGT 1 cut(s) 10
Tru1I TTAA 2 cut(s) 209, 222
Tru9I TTAA 2 cut(s) 209, 222
TseFI GTSAC 3 cut(s) 43, 254, 326
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 3 cut(s) 43, 254, 326
TspDTI ATGAA 2 cut(s) 17, 179
TspGWI ACGGA 1 cut(s) 375
Vha464I CTTAAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.