Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011804

Physical Location & Seq

Genomic Coordinates Forward (+)

62138625 .. 62145629

Gene Structure 7005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG392800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3183 bp

ATGGCGGGAAATGACTGGGTGAACAGTTACTTAGAGGCCATTCTCGACGTCGGTCCCGGCCTCGACGACGCCAAATCGTCGTCGTCGCTGCTGCTCCGGGAACGAGGTCGTTTCAGTCCCACTCGTTACTTCGTCGAAGAGGTCATCACTCGCTACGATGAGACTGATCTCCACCGCTCCTGGGTTCGAGCCGCGGCGACGGCGAGGAGCGCCGAGGAGAGGAACACCAGGCTGGAGAACATGTGCTGGCGGATTTGGAATCTTGCTCGCAAAAAGAAGCAGCTTGAGGGAGAAGAAGCTCAACGAACAGCGAGGCGTCGGGATGAGCGTGAAAGGGGAAGGAGAGAGGCAACTGAGGACATGTCAGAAGACTTATCTGAAGGAGAGAGTAGAGACACAGTTGGTGATATTTCAGCTCATAATAGTGATAGCACTAGAGGAGGAAGAATGCGTAGAATCAATTCTATGGATGTGATGGAGAACTGGGCTGCTCATCAAAAGGAAAAGAAATTCTACATTGTGTTAATAAGCCTCCATGGCTTGATACGCGGTGAAAACATGGAGCTTGGTCGTGATTCTGATACAGGTGGCCAGGTCAAGTATGTTGTGGAACTTGCCAGGGCCTTGGGTTCAATGCCTGGAGTTTATCGCGTTGATTTACTAACAAGACAAGTTTCAGCTCCAGATGTGGATTGGAGTTATGGGGAACCAACTGAAATGTTGAATCCAGTAAACTCTGAGAATCCACAAGAGGAGCTTGGGGAGAGCACTGGGGCTTATATAGTGCGTATACCATTTGGCCCAAAAGATAAATACATTCCAAAAGAACTCCTTTGGCCACACATTCCTGAGTTTGTAGACGGAGCACTTAACCATATTATACAGTTGTCCAAAGCTCTTGGAGAGCAAATTGGAGGTGGGGAACCGGTGTGGCCAGTGGCAATTCATGGACACTATGCAGATGCAGGTGACTCTGCTGCTCTTCTGTCTGGAGCCTTGAATGTCCCAATGTTATTTACTGGTCACTCACTTGGACGAGATAAGCTTGAGCAACTTTTGAAACAAGGACGCCAATCAAGAGAAGAAATAAATACGACATACAAAATTATGAGAAGGATAGAAGCAGAGGAACTATCACTTGACGCCTCTGAGATTGTTATAACCAGCACTAGACAGGAAATAGACTCACAATGGCGCTTGTATGATGGCTTTGATCCAATACTAGAACGTAAACTGCGAGCAAGAATCAAAAGGGGCGTTAGCTGTCATGGCAGGTTTATGCCTCGCACGGTTGTAATACCTCCTGGAATGGAATTTCATCATATTATTCCACCTGCAGATGGTGATGCAGATGGGGAAGGGGAAAGAAATGATGATAGTACTGCTAATCCTGACCTGCCAATTTGGTCAGAGATTATGCGTTTCTTTACCAACCCGCGCAAGCCTATGATACTTGCTCTTGCCAGGGCAGATCCTAAGAAGAATATTACGACTTTAGTTAAAGCATTTGGAGAGTGTCGCCCTTTGAGGGATCTTTCTAACCTCACATTAATTATGGGAAACCGCGACGATATTGATGAAATGTCAAGCACAAATGCCTCCGTGCTTCTTTCTATTTTAAAGCTGATTGACAGATATGATCTGTATGGTCATGTGGCATATCCGAAACACCACAAGCAGTCTGATGTTCCTGACATCTATCGTCTAGCAGCAAAAACAAAGGGTGTTTTTATCAATCCAGCTTTCATTGAGCCATTTGGGCTTACTTTAATAGAGGCAGCAGCTCATGGCTTACCTATTGTTGCCACAAAAAATGGGGGTCCTGTTGATATACATCGGGCTCTTGATAATGGTCTGCTAGTTGACCCCCATGATCAGCAGTCAATTGCTGATGCCCTTCTGAACCTAGTTTCGGATAAGCATCTTTGGGCAAGATGCAGGCAGAATGGACTGAAAAACATTCACCTTTTCTCATGGCCAGAGCATTGTAAGACCTACTTATCTCGCATAACCAGTTGCAAACCAAGGCAGCCACAATGGCGAAGAACTGCCGCTGAAATTGATTCTTCAGGATCAGATTCACCTGATGATTCCTTAAGGGATATACAAGATATATCTTTGAACTTGAAGCTCTCTTTGGATGGTGAGAAAATTGAAGGGGCTGGATCTCTTGATAATGCTTTAGATAATGATGCCGCTGAAGGAAAAGTAAAAGAAGAGAATGCGGTTTTGACAATGTCAAAGGGTGTTCTAGAGGGCTGTCAAAAGGCTGGTGCCACAGAGAAAGAAGAGAACACTGGGGCTGGTAAATTTCCTGCACTGAGGAAAAGGAAGCATGTATTTGTAATTGCTGTGGATTGTGATACAACCTCAGAGTTCAGTGAAATTGTTGAAAAGGTTATTGAGACAGTATCAAAGGAAAAGGATGCAGGACCTATAGGATTCATACTGTCAACAGCCTATCCCATATCAGAGATACAGTCTCTTTTGGTCTCAGGGGGTTTGAGCCCATCACAGTTTGATGGTTTTATATGCAGCAGTGGTGGTGAGCTCTACTATCCATCTTCAAGCGCTGAGGATAGTCCTTCTGGGCTTCCCTTTGTGGTAGACTTGGATTATCGTTCACACACTGAATACCGTTGGGGTGGAGACGGTTTGAGAAAGACTTTGGTTCGTTGGGTCGCTTCTTTCAATGAGAAAAAAGGAGACGGACAAGTTGCAGCAGATGAATCAGGAACAACTAAGCATTGCTATGCGTTTAATGTGAAGGATCCAGCAGTGATTCCCCCTGTTAAGGAACTCCGGAAAATGATGAGAATTCAGGCTCTTCGATGCAATGTTGTATATTCTCAGAATGGTACGAGGCTGAAGGTCATCCCTGTGTTGGCTTCTAGATCACAAGCCCTCAGGTATCTGTATGTCCGATGGGGATTGAACTTGTCAAACATTGTTGCCTTTGTGGGAGAACTAGGTGACACAGATTACGAAGGCTTGCTTGGTGGTGTACACAAGACTGTTATATTGAAGGGAGTAGGTACCAGTGCTCGTAAGCTTCATGCTAACCGGAACTTTCCTTTGGAACATGTCCTTCCAGTCGACAATCCCAATGTTGTTCAAAGTGAAGGATGCTCTGATAAAGACATTCGAGCATCACTGGTGAAACTAAGGATTCTCAAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

1060

Amino Acids

117.96

Weight (kDa)

6.05

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	170 - 397	4.2e-10	Sucrose synthase first GT-B domain
Glycos_transf_1	PF00534	478 - 651	1.7e-23	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	482 - 639	4e-16	Glycosyl transferases group 1
S6PP	PF05116	803 - 993	2e-10	Sucrose-6F-phosphate phosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11110
fragaria_vesca	FvH4_2g28820 FvH4_2g28820
malus_domestica	MD08G1157000.v1.1 MD15G1127900.v1.1
prunus_persica	Prupe.1G483200_v2.0.a1 Prupe.1G483200_v2.0.a1
pyrus_communis	pycom08g12930 pycom15g11500
rosa_chinensis	RchiOBHm_Chr6g0297571
rosa_laevigata	RLG00000011582
rosa_roxburghii	Rroxscaffold_7G00170350
rosa_rugosa	Rorug06G0273700 Rorug06G0273800 Rorug06G0273800
rosa_samantha	Rh6BG392800 Rh6CG398600 Rh6DG385200
rosa_wichuraiana	Rw6G033510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1160
AarI	CACCTGC	2 cut(s)	956, 1342
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	4 cut(s)	956, 1263, 1342, 1404
Acc65I	GGTACC	1 cut(s)	3035
AccB1I	GGYRCC	2 cut(s)	2273, 3035
AccBSI	CCGCTC	1 cut(s)	177
AccI	GTMKAC	4 cut(s)	790, 858, 2607, 3096
AccII	CGCG	5 cut(s)	194, 549, 651, 1438, 1566
AccIII	TCCGGA	1 cut(s)	2802
AclWI	GGATC	7 cut(s)	1208, 1466, 1539, 2080, 2173, 2765, 2778
AcoI	YGGCCR	4 cut(s)	589, 836, 932, 1976
AcsI	RAATTY	4 cut(s)	509, 1313, 2309, 2817
AcuI	CTGAAG	4 cut(s)	399, 2052, 2220, 2888
AcyI	GRCGYC	5 cut(s)	48, 69, 316, 1069, 1143
AfaI	GTAC	4 cut(s)	1381, 2860, 3006, 3037
AfeI	AGCGCT	1 cut(s)	2572
AfiI	CCNNNNNNNGG	7 cut(s)	181, 219, 1340, 1528, 1912, 2794, 2884
AflII	CTTAAG	1 cut(s)	2095
AflIII	ACRYGT	3 cut(s)	240, 360, 3082
AgeI	ACCGGT	1 cut(s)	925
AjnI	CCWGG	7 cut(s)	179, 227, 591, 617, 637, 1303, 1463
AjuI	GAANNNNNNNTTGG	6 cut(s)	2120, 2152, 2979, 3011, 3059, 3091
Alw21I	GWGCWC	4 cut(s)	770, 868, 2553, 3046
Alw26I	GTCTC	7 cut(s)	155, 387, 2399, 2487, 2497, 2643, 2700
AlwI	GGATC	7 cut(s)	1208, 1466, 1539, 2080, 2173, 2765, 2778
Aor13HI	TCCGGA	1 cut(s)	2802
Aor51HI	AGCGCT	1 cut(s)	2572
AoxI	GGCC	8 cut(s)	36, 58, 589, 621, 799, 836, 932, 1976
ApoI	RAATTY	4 cut(s)	509, 1313, 2309, 2817
AseI	ATTAAT	1 cut(s)	1550
AsiGI	ACCGGT	1 cut(s)	925
Asp700I	GAANNNNTTC	1 cut(s)	460
Asp718I	GGTACC	1 cut(s)	3035
AspLEI	GCGC	4 cut(s)	212, 1197, 1440, 2573
AspS9I	GGNCC	5 cut(s)	53, 621, 800, 1820, 2432
AsuC2I	CCSGG	2 cut(s)	57, 98
AvaII	GGWCC	3 cut(s)	53, 1820, 2432
AxyI	CCTNAGG	1 cut(s)	2906
BalI	TGGCCA	4 cut(s)	591, 838, 934, 1978
BamHI	GGATCC	1 cut(s)	2770
BanI	GGYRCC	2 cut(s)	2273, 3035
BanII	GRGCYC	3 cut(s)	1843, 2510, 2553
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	4 cut(s)	770, 868, 2553, 3046
BbvCI	CCTCAGC	1 cut(s)	2574
BccI	CCATC	9 cut(s)	469, 1199, 1334, 1346, 2135, 2516, 2518, 2569, 2919
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	7 cut(s)	181, 229, 593, 619, 639, 1305, 1465
BclI	TGATCA	1 cut(s)	1873
BcnI	CCSGG	2 cut(s)	57, 98
BcoDI	GTCTC	7 cut(s)	155, 387, 2399, 2487, 2497, 2643, 2700
BfaI	CTAG	9 cut(s)	435, 1170, 1223, 1706, 1859, 1907, 2252, 2892, 2969
BfmI	CTRYAG	2 cut(s)	1335, 2436
BfoI	RGCGCY	3 cut(s)	213, 1198, 2574
BfrI	CTTAAG	1 cut(s)	2095
BfuAI	ACCTGC	4 cut(s)	956, 1263, 1342, 1404
BglI	GCCNNNNNGGC	3 cut(s)	537, 1759, 2038
BmcAI	AGTACT	1 cut(s)	1381
Bme1390I	CCNGG	9 cut(s)	57, 98, 181, 229, 593, 619, 639, 1305, 1465
Bme18I	GGWCC	3 cut(s)	53, 1820, 2432
BmgT120I	GGNCC	5 cut(s)	53, 621, 800, 1820, 2432
BmiI	GGNNCC	8 cut(s)	55, 708, 924, 994, 1821, 2275, 2772, 3037
BmrFI	CCNGG	9 cut(s)	57, 98, 181, 229, 593, 619, 639, 1305, 1465
BmrI	ACTGGG	4 cut(s)	25, 493, 780, 2307
BmuI	ACTGGG	4 cut(s)	25, 493, 780, 2307
BoxI	GACNNNNGTC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	4 cut(s)	254, 660, 666, 1011
Bpu10I	CCTNAGC	1 cut(s)	2574
BpuEI	CTTGAG	3 cut(s)	305, 1067, 3158
BpuMI	CCSGG	2 cut(s)	57, 98
BsaBI	GATNNNNATC	2 cut(s)	1833, 1920
BsaHI	GRCGYC	5 cut(s)	48, 69, 316, 1069, 1143
BsaI	GGTCTC	1 cut(s)	2497
BsaJI	CCNNGG	8 cut(s)	180, 192, 213, 535, 618, 624, 1464, 2024
BsaWI	WCCGGW	3 cut(s)	925, 2802, 3063
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	7 cut(s)	181, 219, 1340, 1528, 1912, 2794, 2884
Bse118I	RCCGGY	1 cut(s)	925
Bse21I	CCTNAGG	1 cut(s)	2906
Bse3DI	GCAATG	2 cut(s)	2746, 2842
Bse8I	GATNNNNATC	2 cut(s)	1833, 1920
BseAI	TCCGGA	1 cut(s)	2802
BseBI	CCWGG	7 cut(s)	181, 229, 593, 619, 639, 1305, 1465
BseDI	CCNNGG	8 cut(s)	180, 192, 213, 535, 618, 624, 1464, 2024
BseGI	GGATG	6 cut(s)	328, 475, 2146, 2431, 2874, 3131
BseJI	GATNNNNATC	2 cut(s)	1833, 1920
BseLI	CCNNNNNNNGG	7 cut(s)	181, 219, 1340, 1528, 1912, 2794, 2884
BseMI	GCAATG	2 cut(s)	2746, 2842
BseRI	GAGGAG	4 cut(s)	220, 230, 453, 767
BsgI	GTGCAG	1 cut(s)	2301
Bsh1236I	CGCG	5 cut(s)	194, 549, 651, 1438, 1566
BshFI	GGCC	8 cut(s)	38, 60, 591, 623, 801, 838, 934, 1978
BshNI	GGYRCC	2 cut(s)	2273, 3035
BshTI	ACCGGT	1 cut(s)	925
BsiHKAI	GWGCWC	4 cut(s)	770, 868, 2553, 3046
BsiSI	CCGG	5 cut(s)	57, 97, 926, 2803, 3064
BslFI	GGGAC	3 cut(s)	39, 102, 989
BslI	CCNNNNNNNGG	7 cut(s)	181, 219, 1340, 1528, 1912, 2794, 2884
BsmAI	GTCTC	7 cut(s)	155, 387, 2399, 2487, 2497, 2643, 2700
BsmBI	CGTCTC	2 cut(s)	2643, 2700
BsmFI	GGGAC	3 cut(s)	39, 102, 989
BsmI	GAATGC	2 cut(s)	453, 2227
BsnI	GGCC	8 cut(s)	38, 60, 591, 623, 801, 838, 934, 1978
Bso31I	GGTCTC	1 cut(s)	2497
Bsp1286I	GDGCHC	6 cut(s)	770, 868, 1843, 2510, 2553, 3046
Bsp13I	TCCGGA	1 cut(s)	2802
Bsp1407I	TGTACA	1 cut(s)	3004
Bsp19I	CCATGG	1 cut(s)	535
BspANI	GGCC	8 cut(s)	38, 60, 591, 623, 801, 838, 934, 1978
BspEI	TCCGGA	1 cut(s)	2802
BspFNI	CGCG	5 cut(s)	194, 549, 651, 1438, 1566
BspLI	GGNNCC	8 cut(s)	55, 708, 924, 994, 1821, 2275, 2772, 3037
BspMAI	CTGCAG	1 cut(s)	1339
BspMI	ACCTGC	4 cut(s)	956, 1263, 1342, 1404
BspPI	GGATC	7 cut(s)	1208, 1466, 1539, 2080, 2173, 2765, 2778
BspQI	GCTCTTC	2 cut(s)	987, 2832
BspT107I	GGYRCC	2 cut(s)	2273, 3035
BspTI	CTTAAG	1 cut(s)	2095
BspTNI	GGTCTC	1 cut(s)	2497
BsrBI	CCGCTC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	2746, 2842
BsrFI	RCCGGY	1 cut(s)	925
BsrGI	TGTACA	1 cut(s)	3004
BssAI	RCCGGY	1 cut(s)	925
BssECI	CCNNGG	8 cut(s)	180, 192, 213, 535, 618, 624, 1464, 2024
BssNAI	GTATAC	1 cut(s)	791
BssNI	GRCGYC	5 cut(s)	48, 69, 316, 1069, 1143
BssT1I	CCWWGG	3 cut(s)	535, 624, 2024
Bst1107I	GTATAC	1 cut(s)	791
Bst2UI	CCWGG	7 cut(s)	181, 229, 593, 619, 639, 1305, 1465
Bst6I	CTCTTC	5 cut(s)	132, 987, 2211, 2283, 2832
BstACI	GRCGYC	5 cut(s)	48, 69, 316, 1069, 1143
BstAFI	CTTAAG	1 cut(s)	2095
BstAUI	TGTACA	1 cut(s)	3004
BstC8I	GCNNGC	6 cut(s)	248, 268, 1239, 1442, 1940, 2993
BstDSI	CCRYGG	2 cut(s)	192, 535
BstF5I	GGATG	6 cut(s)	328, 475, 2146, 2431, 2874, 3131
BstFNI	CGCG	5 cut(s)	194, 549, 651, 1438, 1566
BstH2I	RGCGCY	3 cut(s)	213, 1198, 2574
BstHHI	GCGC	4 cut(s)	212, 1197, 1440, 2573
BstMAI	GTCTC	7 cut(s)	155, 387, 2399, 2487, 2497, 2643, 2700
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 209, 537, 546, 1269, 1759, 2038
BstNI	CCWGG	7 cut(s)	181, 229, 593, 619, 639, 1305, 1465
BstNSI	RCATGY	4 cut(s)	244, 364, 2339, 3086
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	9 cut(s)	55, 96, 179, 227, 591, 617, 637, 1303, 1463
BstSFI	CTRYAG	2 cut(s)	1335, 2436
BstUI	CGCG	5 cut(s)	194, 549, 651, 1438, 1566
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	4 cut(s)	1471, 1531, 2165, 2770
BstXI	CCANNNNNNTGG	1 cut(s)	625
BstYI	RGATCY	4 cut(s)	1471, 1531, 2165, 2770
BstZ17I	GTATAC	1 cut(s)	791
Bsu36I	CCTNAGG	1 cut(s)	2906
BsuRI	GGCC	8 cut(s)	38, 60, 591, 623, 801, 838, 934, 1978
BtgI	CCRYGG	2 cut(s)	192, 535
BtsCI	GGATG	6 cut(s)	328, 475, 2146, 2431, 2874, 3131
BtsI	GCAGTG	2 cut(s)	2545, 2784
BveI	ACCTGC	4 cut(s)	956, 1263, 1342, 1404
Cac8I	GCNNGC	6 cut(s)	248, 268, 1239, 1442, 1940, 2993
CfoI	GCGC	4 cut(s)	212, 1197, 1440, 2573
Cfr10I	RCCGGY	1 cut(s)	925
Cfr13I	GGNCC	5 cut(s)	53, 621, 800, 1820, 2432
Cfr42I	CCGCGG	1 cut(s)	195
CseI	GACGC	4 cut(s)	77, 305, 1077, 1151
Csp6I	GTAC	4 cut(s)	1380, 2859, 3005, 3036
CspAI	ACCGGT	1 cut(s)	925
CviQI	GTAC	4 cut(s)	1380, 2859, 3005, 3036
DraI	TTTAAA	1 cut(s)	1620
EaeI	YGGCCR	4 cut(s)	589, 836, 932, 1976
Eam1104I	CTCTTC	5 cut(s)	132, 987, 2211, 2283, 2832
EarI	CTCTTC	5 cut(s)	132, 987, 2211, 2283, 2832
EciI	GGCGGA	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	2551
Eco130I	CCWWGG	3 cut(s)	535, 624, 2024
Eco24I	GRGCYC	3 cut(s)	1843, 2510, 2553
Eco31I	GGTCTC	1 cut(s)	2497
Eco47I	GGWCC	3 cut(s)	53, 1820, 2432
Eco47III	AGCGCT	1 cut(s)	2572
Eco53kI	GAGCTC	1 cut(s)	2551
Eco57I	CTGAAG	4 cut(s)	399, 2052, 2220, 2888
Eco81I	CCTNAGG	1 cut(s)	2906
EcoICRI	GAGCTC	1 cut(s)	2551
EcoO109I	RGGNCCY	3 cut(s)	621, 1820, 2432
EcoRI	GAATTC	1 cut(s)	2817
EcoRII	CCWGG	7 cut(s)	179, 227, 591, 617, 637, 1303, 1463
EcoT14I	CCWWGG	3 cut(s)	535, 624, 2024
EcoT38I	GRGCYC	3 cut(s)	1843, 2510, 2553
ErhI	CCWWGG	3 cut(s)	535, 624, 2024
Esp3I	CGTCTC	2 cut(s)	2643, 2700
FalI	AAGNNNNNCTT	8 cut(s)	741, 773, 816, 848, 1982, 2014, 2979, 3011
FaqI	GGGAC	3 cut(s)	39, 102, 989
FauI	CCCGC	1 cut(s)	1443
FbaI	TGATCA	1 cut(s)	1873
FblI	GTMKAC	4 cut(s)	790, 858, 2607, 3096
FokI	GGATG	6 cut(s)	335, 482, 2153, 2438, 2861, 3138
FriOI	GRGCYC	3 cut(s)	1843, 2510, 2553
FspBI	CTAG	9 cut(s)	435, 1170, 1223, 1706, 1859, 1907, 2252, 2892, 2969
GlaI	GCGC	4 cut(s)	211, 1196, 1439, 2572
GsuI	CTGGAG	4 cut(s)	254, 660, 666, 1011
HaeII	RGCGCY	3 cut(s)	213, 1198, 2574
HaeIII	GGCC	8 cut(s)	38, 60, 591, 623, 801, 838, 934, 1978
HapII	CCGG	5 cut(s)	57, 97, 926, 2803, 3064
HgaI	GACGC	4 cut(s)	77, 305, 1077, 1151
HhaI	GCGC	4 cut(s)	212, 1197, 1440, 2573
Hin1I	GRCGYC	5 cut(s)	48, 69, 316, 1069, 1143
Hin6I	GCGC	4 cut(s)	210, 1195, 1438, 2571
HinP1I	GCGC	4 cut(s)	210, 1195, 1438, 2571
HincII	GTYRAC	3 cut(s)	1864, 2454, 3097
HindII	GTYRAC	3 cut(s)	1864, 2454, 3097
HindIII	AAGCTT	2 cut(s)	1043, 3050
HpaII	CCGG	5 cut(s)	57, 97, 926, 2803, 3064
HpyCH4IV	ACGT	2 cut(s)	48, 1228
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 209, 537, 546, 1269, 1759, 2038
HpySE526I	ACGT	2 cut(s)	48, 1228
Hsp92I	GRCGYC	5 cut(s)	48, 69, 316, 1069, 1143
HspAI	GCGC	4 cut(s)	210, 1195, 1438, 2571
Kpn2I	TCCGGA	1 cut(s)	2802
KpnI	GGTACC	1 cut(s)	3039
Ksp22I	TGATCA	1 cut(s)	1873
KspI	CCGCGG	1 cut(s)	195
LguI	GCTCTTC	2 cut(s)	987, 2832
LmnI	GCTCC	8 cut(s)	99, 182, 207, 562, 685, 754, 863, 992
MaeI	CTAG	9 cut(s)	435, 1170, 1223, 1706, 1859, 1907, 2252, 2892, 2969
MaeII	ACGT	2 cut(s)	48, 1228
MaeIII	GTNAC	5 cut(s)	26, 125, 968, 1022, 2972
MbiI	CCGCTC	1 cut(s)	177
MfeI	CAATTG	1 cut(s)	1884
MflI	RGATCY	4 cut(s)	1471, 1531, 2165, 2770
MhlI	GDGCHC	6 cut(s)	770, 868, 1843, 2510, 2553, 3046
MlsI	TGGCCA	4 cut(s)	591, 838, 934, 1978
MluNI	TGGCCA	4 cut(s)	591, 838, 934, 1978
MlyI	GAGTC	2 cut(s)	965, 1178
Mox20I	TGGCCA	4 cut(s)	591, 838, 934, 1978
MroI	TCCGGA	1 cut(s)	2802
MroXI	GAANNNNTTC	1 cut(s)	460
MscI	TGGCCA	4 cut(s)	591, 838, 934, 1978
MseI	TTAA	9 cut(s)	524, 870, 1500, 1550, 1619, 1769, 2096, 2760, 2793
MslI	CAYNNNNRTG	3 cut(s)	423, 2751, 2879
Msp20I	TGGCCA	4 cut(s)	591, 838, 934, 1978
MspA1I	CMGCKG	3 cut(s)	194, 2054, 2198
MspCI	CTTAAG	1 cut(s)	2095
MspI	CCGG	5 cut(s)	57, 97, 926, 2803, 3064
MspR9I	CCNGG	9 cut(s)	57, 98, 181, 229, 593, 619, 639, 1305, 1465
MunI	CAATTG	1 cut(s)	1884
Mva1269I	GAATGC	2 cut(s)	453, 2227
MvaI	CCWGG	7 cut(s)	181, 229, 593, 619, 639, 1305, 1465
MvnI	CGCG	5 cut(s)	194, 549, 651, 1438, 1566
MwoI	GCNNNNNNNGC	7 cut(s)	200, 209, 537, 546, 1269, 1759, 2038
NciI	CCSGG	2 cut(s)	57, 98
NcoI	CCATGG	1 cut(s)	535
NlaIV	GGNNCC	8 cut(s)	55, 708, 924, 994, 1821, 2275, 2772, 3037
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	3 cut(s)	968, 1022, 2972
NspI	RCATGY	4 cut(s)	244, 364, 2339, 3086
PaqCI	CACCTGC	2 cut(s)	956, 1342
PciI	ACATGT	3 cut(s)	240, 360, 3082
PciSI	GCTCTTC	2 cut(s)	987, 2832
PcsI	WCGNNNNNNNCGW	2 cut(s)	325, 1234
PctI	GAATGC	2 cut(s)	453, 2227
PdmI	GAANNNNTTC	1 cut(s)	460
PflFI	GACNNNGTC	1 cut(s)	2236
PfoI	TCCNGGA	2 cut(s)	96, 1303
PinAI	ACCGGT	1 cut(s)	925
PleI	GAGTC	2 cut(s)	965, 1178
PpsI	GAGTC	2 cut(s)	965, 1178
PpuMI	RGGWCCY	2 cut(s)	1820, 2432
PscI	ACATGT	3 cut(s)	240, 360, 3082
PshAI	GACNNNNGTC	1 cut(s)	51
PshBI	ATTAAT	1 cut(s)	1550
PsiI	TTATAA	1 cut(s)	1160
Psp124BI	GAGCTC	1 cut(s)	2553
Psp5II	RGGWCCY	2 cut(s)	1820, 2432
Psp6I	CCWGG	7 cut(s)	179, 227, 591, 617, 637, 1303, 1463
PspGI	CCWGG	7 cut(s)	179, 227, 591, 617, 637, 1303, 1463
PspN4I	GGNNCC	8 cut(s)	55, 708, 924, 994, 1821, 2275, 2772, 3037
PspPI	GGNCC	5 cut(s)	53, 621, 800, 1820, 2432
PspPPI	RGGWCCY	2 cut(s)	1820, 2432
PstI	CTGCAG	1 cut(s)	1339
PsuI	RGATCY	4 cut(s)	1471, 1531, 2165, 2770
PsyI	GACNNNGTC	1 cut(s)	2236
RsaI	GTAC	4 cut(s)	1381, 2860, 3006, 3037
RsaNI	GTAC	4 cut(s)	1380, 2859, 3005, 3036
RseI	CAYNNNNRTG	3 cut(s)	423, 2751, 2879
SacI	GAGCTC	1 cut(s)	2553
SacII	CCGCGG	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	3095
SapI	GCTCTTC	2 cut(s)	987, 2832
SaqAI	TTAA	9 cut(s)	524, 870, 1500, 1550, 1619, 1769, 2096, 2760, 2793
Sau96I	GGNCC	5 cut(s)	53, 621, 800, 1820, 2432
ScaI	AGTACT	1 cut(s)	1381
SchI	GAGTC	2 cut(s)	965, 1178
ScrFI	CCNGG	9 cut(s)	57, 98, 181, 229, 593, 619, 639, 1305, 1465
SduI	GDGCHC	6 cut(s)	770, 868, 1843, 2510, 2553, 3046
SfcI	CTRYAG	2 cut(s)	1335, 2436
Sfr303I	CCGCGG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	195
SinI	GGWCC	3 cut(s)	53, 1820, 2432
SmiMI	CAYNNNNRTG	3 cut(s)	423, 2751, 2879
SmlI	CTYRAG	4 cut(s)	284, 1046, 2095, 3173
SmoI	CTYRAG	4 cut(s)	284, 1046, 2095, 3173
SspI	AATATT	1 cut(s)	1486
SspMI	CTAG	9 cut(s)	435, 1170, 1223, 1706, 1859, 1907, 2252, 2892, 2969
SstI	GAGCTC	1 cut(s)	2553
StyD4I	CCNGG	9 cut(s)	55, 96, 179, 227, 591, 617, 637, 1303, 1463
StyI	CCWWGG	3 cut(s)	535, 624, 2024
TaiI	ACGT	2 cut(s)	51, 1231
TaqI	TCGA	7 cut(s)	45, 63, 135, 187, 2830, 3096, 3145
TaqII	GACCGA	1 cut(s)	41
TatI	WGTACW	2 cut(s)	1379, 3004
TauI	GCSGC	4 cut(s)	194, 197, 2054, 2198
Tru1I	TTAA	9 cut(s)	524, 870, 1500, 1550, 1619, 1769, 2096, 2760, 2793
Tru9I	TTAA	9 cut(s)	524, 870, 1500, 1550, 1619, 1769, 2096, 2760, 2793
TseFI	GTSAC	3 cut(s)	968, 1022, 2972
Tsp45I	GTSAC	3 cut(s)	968, 1022, 2972
TspDTI	ATGAA	7 cut(s)	935, 1307, 1593, 1735, 2434, 2742, 3044
TspGWI	ACGGA	3 cut(s)	876, 1591, 2724
Tth111I	GACNNNGTC	1 cut(s)	2236
Vha464I	CTTAAG	1 cut(s)	2095
VpaK11BI	GGWCC	3 cut(s)	53, 1820, 2432
VspI	ATTAAT	1 cut(s)	1550
XapI	RAATTY	4 cut(s)	509, 1313, 2309, 2817
XbaI	TCTAGA	2 cut(s)	2251, 2891
XceI	RCATGY	4 cut(s)	244, 364, 2339, 3086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	690
XmiI	GTMKAC	4 cut(s)	790, 858, 2607, 3096
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	9 cut(s)	435, 1170, 1223, 1706, 1859, 1907, 2252, 2892, 2969
ZraI	GACGTC	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.