Rorug06G0273800

Belongs to the glycosyltransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011804
Physical Location & Seq
Reverse (-)
42098805 .. 42102599
3795 bp
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UTR
Exon/CDS
Intron
Rorug06G0273800.1

Sequence Viewer

Length: 621 bp
ATGAGCACTCGGGTGGCAAGGGGGCCTTCTGCAAGAACTGGTCTCAGGCGAAGGAAGAATGAATTAGATCTCAATAGTGCACCACCTGGTGAGAATCGGAATCAAGAGGGAACTTCAGCTCAGGTGTTACCTCAGGTTGAGAGACCTAGCCAGCCCCCATTGGTGATTGATCTTGAGGCTATTGATGATGATGTTGTCATATCTTCCCCCAGGGCTATTGCTGAAGCTGAAAACAACTCCAGAAGGAACCGAAGGAGGCCTGTGGTTGATTTGGAATCAGAACTGCCTAGGGCCACTCGTCAAAAGCGCAGAAGAGTTGAGCCAAATCAAACAATCATTAATTGCGAACTTTACATAAACTTGGATGGCAATAGCAACTCCAATTCAAAGAATGAGCGGGCTATGCAGCCACCACTGCCGCCACCACCGCCAAAGGAGCCCACCTTTACCTGTCCCATTTGCATGGCTCCGTTGGTTGAGGAGATGTCAACAAAATGTGGTCACATTTTCTGTAAGAAGTGCATTAAGGCTGCGATAACTGCACAGGGAAAATGCCCTACCTGTAGGAGAAAAGTAACTGCGAAAGAGCTCATTAGGGTATTCCTTCCTACTTCCTCCTGA

Protein Analysis

206

Amino Acids

22.96

Weight (kDa)

9.61

Isoelectric Point (pI)

72.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 150 - 189 1.1e-09 Ring finger domain
zf-C3HC4_3 PF13920 150 - 193 1.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 151 - 188 3.6e-10 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 151 - 188 3.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 151 - 186 5e-07 RING-type zinc-finger
zf-RING_5 PF14634 151 - 190 3.2e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011804)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11110
fragaria_vesca FvH4_2g28820 FvH4_2g28820
malus_domestica MD08G1157000.v1.1 MD15G1127900.v1.1
prunus_persica Prupe.1G483200_v2.0.a1 Prupe.1G483200_v2.0.a1
pyrus_communis pycom08g12930 pycom15g11500
rosa_chinensis RchiOBHm_Chr6g0297571
rosa_laevigata RLG00000011582
rosa_roxburghii Rroxscaffold_7G00170350
rosa_rugosa Rorug06G0273700 Rorug06G0273800 Rorug06G0273800
rosa_samantha Rh6BG392800 Rh6CG398600 Rh6DG385200
rosa_wichuraiana Rw6G033510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 397
AciI CCGC 3 cut(s) 397, 419, 428
AcuI CTGAAG 2 cut(s) 99, 243
AdeI CACNNNGTG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 387
AjnI CCWGG 2 cut(s) 85, 209
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 3 cut(s) 119, 227, 589
AluI AGCT 3 cut(s) 119, 227, 589
Alw21I GWGCWC 3 cut(s) 8, 82, 591
Alw26I GTCTC 2 cut(s) 47, 136
Alw44I GTGCAC 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 3 cut(s) 23, 257, 291
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 406, 530
AseI ATTAAT 1 cut(s) 339
AspA2I CCTAGG 1 cut(s) 287
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 23, 291
AsuHPI GGTGA 2 cut(s) 101, 175
AvaI CYCGRG 1 cut(s) 9
AvrII CCTAGG 1 cut(s) 287
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 82
BanII GRGCYC 2 cut(s) 441, 591
Bbv12I GWGCWC 3 cut(s) 8, 82, 591
BbvI GCAGC 2 cut(s) 418, 517
BccI CCATC 1 cut(s) 359
BciT130I CCWGG 2 cut(s) 87, 211
BcoDI GTCTC 2 cut(s) 47, 136
BfaI CTAG 2 cut(s) 147, 288
BfmI CTRYAG 1 cut(s) 562
BglII AGATCT 1 cut(s) 67
BisI GCNGC 3 cut(s) 407, 419, 531
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 3 cut(s) 408, 420, 532
Bme1390I CCNGG 2 cut(s) 87, 211
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 23, 291
BmiI GGNNCC 4 cut(s) 24, 248, 438, 468
BmrFI CCNGG 2 cut(s) 87, 211
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 194
BsaI GGTCTC 2 cut(s) 47, 136
BsaJI CCNNGG 3 cut(s) 209, 210, 287
Bse1I ACTGG 1 cut(s) 43
Bse21I CCTNAGG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 87, 211
BseDI CCNNGG 3 cut(s) 209, 210, 287
BseGI GGATG 1 cut(s) 370
BseMII CTCAG 3 cut(s) 58, 134, 146
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 494
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 2 cut(s) 418, 517
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 3 cut(s) 25, 259, 293
BsiHKAI GWGCWC 3 cut(s) 8, 82, 591
BsiHKCI CYCGRG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 438
BsmAI GTCTC 2 cut(s) 47, 136
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 3 cut(s) 25, 259, 293
Bso31I GGTCTC 2 cut(s) 47, 136
BsoBI CYCGRG 1 cut(s) 9
Bsp1286I GDGCHC 4 cut(s) 8, 82, 441, 591
Bsp143I GATC 2 cut(s) 67, 169
BspACI CCGC 3 cut(s) 397, 419, 428
BspANI GGCC 3 cut(s) 25, 259, 293
BspCNI CTCAG 3 cut(s) 57, 133, 145
BspLI GGNNCC 4 cut(s) 24, 248, 438, 468
BspTNI GGTCTC 2 cut(s) 47, 136
BsrBI CCGCTC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 3 cut(s) 209, 210, 287
BssMI GATC 2 cut(s) 67, 169
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 87, 211
Bst6I CTCTTC 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 152, 399
BstDEI CTNAG 3 cut(s) 44, 120, 132
BstF5I GGATG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 2 cut(s) 70, 172
BstMAI GTCTC 2 cut(s) 47, 136
BstMBI GATC 2 cut(s) 67, 169
BstMWI GCNNNNNNNGC 5 cut(s) 403, 415, 427, 436, 539
BstNI CCWGG 2 cut(s) 87, 211
BstSCI CCNGG 2 cut(s) 85, 209
BstSFI CTRYAG 1 cut(s) 562
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 418, 517
BstX2I RGATCY 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 1 cut(s) 67
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 3 cut(s) 25, 259, 293
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 152, 399
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 23, 291
CsiI ACCWGGT 1 cut(s) 85
CviAII CATG 1 cut(s) 463
DdeI CTNAG 3 cut(s) 44, 120, 132
DpnI GATC 2 cut(s) 69, 171
DpnII GATC 2 cut(s) 67, 169
DraIII CACNNNGTG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 2 cut(s) 441, 591
Eco31I GGTCTC 2 cut(s) 47, 136
Eco53kI GAGCTC 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 99, 243
Eco81I CCTNAGG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 85, 209
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 2 cut(s) 441, 591
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 1 cut(s) 466
FaiI YATR 4 cut(s) 200, 356, 404, 464
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 1 cut(s) 438
FatI CATG 1 cut(s) 462
FauI CCCGC 1 cut(s) 390
Fnu4HI GCNGC 3 cut(s) 407, 419, 531
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 2 cut(s) 441, 591
Fsp4HI GCNGC 3 cut(s) 407, 419, 531
FspBI CTAG 2 cut(s) 147, 288
GlaI GCGC 1 cut(s) 308
GluI GCNGC 3 cut(s) 407, 419, 531
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 3 cut(s) 25, 259, 293
HhaI GCGC 1 cut(s) 309
Hin1II CATG 1 cut(s) 466
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 3 cut(s) 94, 100, 275
HphI GGTGA 2 cut(s) 101, 175
Hpy166II GTNNAC 2 cut(s) 80, 489
Hpy188I TCNGA 2 cut(s) 99, 280
Hpy188III TCNNGA 4 cut(s) 104, 173, 240, 618
Hpy8I GTNNAC 2 cut(s) 80, 489
HpyAV CCTTC 5 cut(s) 36, 45, 237, 246, 614
HpyCH4V TGCA 6 cut(s) 32, 80, 406, 462, 522, 542
HpyF10VI GCNNNNNNNGC 5 cut(s) 403, 415, 427, 436, 539
HpyF3I CTNAG 3 cut(s) 44, 120, 132
Hsp92II CATG 1 cut(s) 466
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 67, 169
LmnI GCTCC 2 cut(s) 436, 472
Lsp1109I GCAGC 2 cut(s) 418, 517
MabI ACCWGGT 1 cut(s) 85
MaeI CTAG 2 cut(s) 147, 288
MaeIII GTNAC 3 cut(s) 126, 500, 574
MalI GATC 2 cut(s) 69, 171
MbiI CCGCTC 1 cut(s) 397
MboI GATC 2 cut(s) 67, 169
MboII GAAGA 3 cut(s) 67, 195, 324
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 4 cut(s) 8, 82, 441, 591
MluCI AATT 3 cut(s) 62, 340, 382
MnlI CCTC 5 cut(s) 100, 141, 169, 249, 472
MseI TTAA 2 cut(s) 339, 525
MslI CAYNNNNRTG 2 cut(s) 11, 461
MspR9I CCNGG 2 cut(s) 87, 211
MvaI CCWGG 2 cut(s) 87, 211
MwoI GCNNNNNNNGC 5 cut(s) 403, 415, 427, 436, 539
NdeII GATC 2 cut(s) 67, 169
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 4 cut(s) 24, 248, 438, 468
NmuCI GTSAC 1 cut(s) 500
OliI CACNNNNGTG 1 cut(s) 11
PasI CCCWGGG 1 cut(s) 210
PceI AGGCCT 1 cut(s) 259
PfeI GAWTC 3 cut(s) 94, 100, 275
PkrI GCNGC 3 cut(s) 408, 420, 532
PshBI ATTAAT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 85, 209
PspGI CCWGG 2 cut(s) 85, 209
PspN4I GGNNCC 4 cut(s) 24, 248, 438, 468
PspPI GGNCC 2 cut(s) 23, 291
PsuI RGATCY 1 cut(s) 67
RseI CAYNNNNRTG 2 cut(s) 11, 461
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 2 cut(s) 339, 525
SatI GCNGC 3 cut(s) 407, 419, 531
Sau3AI GATC 2 cut(s) 67, 169
Sau96I GGNCC 2 cut(s) 23, 291
ScrFI CCNGG 2 cut(s) 87, 211
SduI GDGCHC 4 cut(s) 8, 82, 441, 591
SexAI ACCWGGT 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 562
SmiMI CAYNNNNRTG 2 cut(s) 11, 461
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 3 cut(s) 62, 340, 382
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 3 cut(s) 397, 419, 428
SspMI CTAG 2 cut(s) 147, 288
SstI GAGCTC 1 cut(s) 591
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 85, 209
StyI CCWWGG 1 cut(s) 287
TasI AATT 3 cut(s) 62, 340, 382
TauI GCSGC 1 cut(s) 421
TfiI GAWTC 3 cut(s) 94, 100, 275
Tru1I TTAA 2 cut(s) 339, 525
Tru9I TTAA 2 cut(s) 339, 525
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 2 cut(s) 406, 530
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 420
VneI GTGCAC 1 cut(s) 78
VspI ATTAAT 1 cut(s) 339
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 2 cut(s) 147, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.