Rorug01G0311300

MIZ/SP-RING zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000955
Physical Location & Seq
Reverse (-)
42843025 .. 42848106
5082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0311300.1

Sequence Viewer

Length: 3063 bp
ATGGAATCATCGCCGCCGCACGACCGCCGGTGCAAGCGCGTCGCCGGCACGAAGTCGCGGCCCGGCGAGCTCAAGAGCAACGGGGATAAGAAGATCAAGAGAGACAGTGAAGTGGTGGAGGAGGATCGCCGCTGCAATCGCCGCGCCGGAGCGTGGCGGTGCGGCGAGGCGGCGGCGGTTGGGAAGCCGATGTGCCGACATCACTTGGCGCAGAGCAAGAGTTACCAGGAGAGGAAGAAAAAGAGAGAGGGAAGCGGAGACAGTGATTCCGGCGAAGAAGACGGACGTGACCGGAAAATCAACGCCGGCGGATCGGAGAATAAGAAGAAGAAGAAGAGGAGGAGGACCGCGAGTGAGTCTGAGTCGGAGTCGGAGCACAGGTCGAGGAATCGGACTGTGAAAGCGAAGGTGAATGGTAAATCTGCAGATTCCGGTAGTGTTATGAAGAAGAGTAAACTAAAAGAGGAAAAGCCAAAGCCAATGGAAAAGGGTGAGTCTAACAAAATCAAGGGGAGCTTGATGTGTCACCAGTGTCAGCGGAACGATAAGAGTGGTGTTGTACACTGCTCTCTGTGTAAATCAAAGCGGTTTTGCTATGAGTGCATTGAAAGATGGTACCCTGGGAAATCAAGAGAGGAATTTTTGGATGCTTGCCCATTTTGCCGTGGCAACTGCAACTGCAAAGCGTGCCTGCGCGAGTTTTTGGTTAAACCTTGCCGAGAAGTTGAGCCCAGTGTTAAGTTACAGCGACTGCTTTACCTGTTATATAAGGCTTTGCCTGTGCTGAGGCATATATATAGTGAGCAGAGCTCTGAACTGGAGATAGAAGCCAAAATCAGAGGTGTACACTTAACTGAAATGGACATAAAGAGAACTAAAGTACACCAAAATGAGCGAATGTACTGTGACAATTGTTCTACATCTATTGTGGATTTCCACAGAAGCTGTCCAAACCCCAATTGTTCCTATGACCTGTGTCTTACTTGTTGCAAAGAGCTAAGGGACGGTCGGCAACCTGGAGGTAATGAAGGAGAAACATCTCACCAGCAAGCTCTAGAAAGAGCTCATAAAGAAGTGAAAGGACATTGCTGGGAGAGTAAAGTTGCCTCTACTTCTGATGATTCTAAAGTGGACCCATCCATTTCTTTTCCTAATTGGAGAGCTGATTCTGATGGCAGTATTCCATGCCCTCCAAAAGAACGTGGAGGTTGTGGCAATGCGAAGCTGGAATTGAGGCGTAAATTCAAAGCTAATTGGGTAATGAAGCTGCTAAAAAATGCAGAAGATGTTACTACTGACTTCAAGTGGCAAGAAGTTGATATTTCTCAAGGATGTTCCTGGTGCCAGCCAAATGATTCCGAGGAAACCAATGATAGGAAGCCTGAAAGGAGGCAAGCAGCTTTCAGGAAAAACAGTCATGATAACTTCTTATACTGTCCAGATGCTATTGACATTTCAGACGATGAGATCGAGCATTTTCAGAGGCACTGGATGAAAGGGGAACCGGTGATTGTCAGAAATGTTCTTGACAAGACATCTGGTCTTAGTTGGGAACCTATGGTTATGTGGAGGGCTTTCAGAGAAACGGGTGCTAATGTAAAGTTCAAAGAGGAGACTAAAAGTGTAAAAGCCATTGATTGCTTGGATTGGAATGAGGTTGAGATTAATATTCACCAATTTTTCACGGGCTACTTAGCGGGTCGCATGCATAAAGATAAGTGGCCAGAGATGTTAAAATTAAAGGATTGGCCATCATCAACTTTGTTTGAGGAACGCTTGCCAAGACACTGTGCGGAATTCATTGCAGCGCTCCCCTACAGTGACTATACTGATCCCAAAGATTCAAATGCTGGTATTCTCAATCTTGCTACAAGACTTCCTGAAGGGTCGCTGAAACCTGATATGGGACCAAAAACATACATTGCTTATGGATTCTCCGAAGAGCTTGGTAGAGGTGATTCAGTGACTAAGCTGCACTGCGATATGTCTGATGCGGTAAATGTTCTGACACACACAGCAACAGTGAAGATTGAACCGTGGCAGCACAATGCCATAAAGAATTTGAAGAGCAAACATGAAGCTGAAGACCTTTGTGAACTCTACAATGAAAAAAATCACAAGAAGGGCAGGGTTAGAGGAACATTGTTGAAGAAAACTCGCAACGTCCTGGTTAAGGGTGCTGATTCTTCTGAATATACTAAAAGTGGTAAAGTTGTGGAGAATGACCATCTAGTGTCAACTCTGCAGGATGGGAAGGGAAACAAACTGGACAGAGCACAGTCATGTAGAACTTCACTTTTGTCAGATTCTGTCGATCCAGGCATCCTTAGATCTGATGAAACAGAATATGTTCCGGAACCTCTTGCTACTACTGAACTAAATGAAGTAAAGGTTGCGAGTGTTGATCATCAGAGGGATGATGTGCTAAAATCCACCTCGCCTCGTGCAAATGGAGTTGAAAAAGAGCAAGAGCGTGTTCAATGTTCCAGTGACATGATCGGTGGAAGGCTTGAAGGGAAAGATGCTTCAAGGGATGCAAGTGTAAACACGCATGCAACAAAGGATTTCAAAGGTAGTGACAAGTTGGACATTGTCCGTGGTGGTGCTGTTTGGGACATCTTTCGTATCCAGGACACTCCCAAGTTAATAGAGTACCTGGAGAAACACAAAAAAAAATTTCGCCACCTTAATAATCATCCTGTAGATTCTGTTGTTCATCCTATTCATGATCAGACTCTGTACTTGAATGAGAGACATAAGAAACAACTAAAGGAGGAGTTCGATGTGGAGCCTTGGACATTTGAGCAACATCTTGGTGAGGCAGTTTTTATTCCAGCGGGATGTCCTCATCAAGTGCGAAATAGACAATCTTGTATAAAGGTAGCACTTGATTTTGTATCTCCTGAGAATCTTGAAGTATGTCTGCGATTAACTGAAGAGTTCCGTTTACTCCCAAAAACCCACAGAGCCAAGGAAGATAAATTGGAGGTGAAGAAGATGACACTCTATGCTGTAAGTTCAGCACTGCGAGAAGCCAAAAATTTGATGCTGGGGCTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04630 ko05160 map04120 map04630 map05160
Pfam Domains
Protein Families
SAP zf-MIZ

Protein Analysis

1020

Amino Acids

116.31

Weight (kDa)

8.71

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 869 - 965 5.1e-15 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000955)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g19970 FvH4_7g19970 FvH4_7g19970 FvH4_7g19970 FvH4_7g19970 FvH4_7g19970
malus_domestica MD01G1111200.v1.1 MD07G1177400.v1.1
prunus_persica Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1 Prupe.2G216700_v2.0.a1
pyrus_communis pycom01g13860 pycom07g17140
rosa_chinensis RchiOBHm_Chr1g0363931
rosa_laevigata RLG00000027534
rosa_multiflora Rmu_sc0001607.1_g000006
rosa_roxburghii Rroxscaffold_4G00292830
rosa_rugosa Rorug01G0311200 Rorug01G0311300
rosa_samantha Rh1AG319200 Rh1BG282200 Rh1CG298700 Rh1DG313600
rosa_wichuraiana Rw1G028290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 615
AccB1I GGYRCC 2 cut(s) 615, 1341
AccII CGCG 5 cut(s) 39, 58, 144, 350, 696
AccIII TCCGGA 1 cut(s) 2353
AclWI GGATC 4 cut(s) 132, 319, 1826, 2309
AcoI YGGCCR 2 cut(s) 1721, 1748
AcsI RAATTY 6 cut(s) 638, 1241, 1796, 2059, 2675, 3040
AcuI CTGAAG 3 cut(s) 1902, 2103, 2955
AfaI GTAC 7 cut(s) 561, 617, 846, 882, 902, 2654, 2741
AfeI AGCGCT 1 cut(s) 1809
AfiI CCNNNNNNNGG 4 cut(s) 153, 1374, 1904, 2173
AgeI ACCGGT 1 cut(s) 1504
AhdI GACNNNNNGTC 1 cut(s) 1539
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 8 cut(s) 225, 619, 1015, 1337, 2166, 2317, 2628, 2655
Alw21I GWGCWC 5 cut(s) 72, 378, 812, 1066, 2278
Alw26I GTCTC 4 cut(s) 96, 252, 1607, 2746
AlwI GGATC 4 cut(s) 132, 319, 1826, 2309
AlwNI CAGNNNCTG 4 cut(s) 751, 945, 2309, 2737
Aor13HI TCCGGA 1 cut(s) 2353
Aor51HI AGCGCT 1 cut(s) 1809
AoxI GGCC 3 cut(s) 59, 1721, 1748
ApeKI GCWGC 6 cut(s) 132, 1267, 1397, 1805, 1972, 2041
ApoI RAATTY 6 cut(s) 638, 1241, 1796, 2059, 2675, 3040
AseI ATTAAT 1 cut(s) 1665
AsiGI ACCGGT 1 cut(s) 1504
Asp700I GAANNNNTTC 1 cut(s) 2349
Asp718I GGTACC 1 cut(s) 615
AspLEI GCGC 5 cut(s) 39, 146, 211, 696, 1810
AspS9I GGNCC 4 cut(s) 60, 345, 1132, 1907
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 9 cut(s) 421, 503, 518, 1034, 1519, 1664, 1967, 2828, 3001
AvaII GGWCC 3 cut(s) 345, 1132, 1907
BalI TGGCCA 2 cut(s) 1723, 1750
BanI GGYRCC 2 cut(s) 615, 1341
BanII GRGCYC 4 cut(s) 72, 732, 812, 1066
BauI CACGAG 1 cut(s) 2442
BbsI GAAGAC 2 cut(s) 285, 2091
Bbv12I GWGCWC 5 cut(s) 72, 378, 812, 1066, 2278
BbvCI CCTCAGC 1 cut(s) 785
BbvI GCAGC 6 cut(s) 119, 1254, 1409, 1817, 1959, 2053
BccI CCATC 6 cut(s) 606, 1144, 1166, 1759, 2235, 2243
BceAI ACGGC 1 cut(s) 648
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 8 cut(s) 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
BciVI GTATCC 1 cut(s) 2636
BclI TGATCA 2 cut(s) 2404, 2728
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 4 cut(s) 96, 252, 1607, 2746
BfaI CTAG 2 cut(s) 1055, 2231
BfmI CTRYAG 4 cut(s) 423, 1816, 2243, 2700
BfoI RGCGCY 1 cut(s) 1811
BfuI GTATCC 1 cut(s) 2636
BglII AGATCT 1 cut(s) 2330
Bme1390I CCNGG 9 cut(s) 63, 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
Bme18I GGWCC 3 cut(s) 345, 1132, 1907
BmeRI GACNNNNNGTC 1 cut(s) 1539
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 60, 345, 1132, 1907
BmiI GGNNCC 8 cut(s) 617, 1134, 1343, 1503, 1554, 1908, 2358, 2790
BmrFI CCNGG 9 cut(s) 63, 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
BmrI ACTGGG 1 cut(s) 726
BmsI GCATC 7 cut(s) 637, 1432, 1981, 2331, 2512, 2524, 3036
BmuI ACTGGG 1 cut(s) 726
BoxI GACNNNNGTC 1 cut(s) 975
BpiI GAAGAC 2 cut(s) 285, 2091
BplI GAGNNNNNCTC 2 cut(s) 794, 826
BpmI CTGGAG 3 cut(s) 839, 1038, 2678
Bpu10I CCTNAGC 2 cut(s) 785, 998
BpuEI CTTGAG 2 cut(s) 56, 1311
BpuMI CCSGG 1 cut(s) 63
BsaJI CCNNGG 8 cut(s) 619, 620, 664, 1359, 2036, 2596, 2792, 2970
BsaWI WCCGGW 4 cut(s) 291, 431, 1504, 2353
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 1374, 1904, 2173
Bse118I RCCGGY 4 cut(s) 27, 44, 305, 1504
Bse1I ACTGG 6 cut(s) 529, 732, 822, 1493, 2271, 2487
Bse3DI GCAATG 4 cut(s) 1084, 1222, 1800, 1920
BseAI TCCGGA 1 cut(s) 2353
BseBI CCWGG 8 cut(s) 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
BseDI CCNNGG 8 cut(s) 619, 620, 664, 1359, 2036, 2596, 2792, 2970
BseLI CCNNNNNNNGG 4 cut(s) 153, 1374, 1904, 2173
BseMI GCAATG 4 cut(s) 1084, 1222, 1800, 1920
BseMII CTCAG 3 cut(s) 351, 776, 2895
BseNI ACTGG 6 cut(s) 529, 732, 822, 1493, 2271, 2487
BseRI GAGGAG 5 cut(s) 134, 352, 355, 1625, 2789
BseXI GCAGC 6 cut(s) 119, 1254, 1409, 1817, 1959, 2053
BseYI CCCAGC 2 cut(s) 1089, 3049
BsgI GTGCAG 1 cut(s) 1958
Bsh1236I CGCG 5 cut(s) 39, 58, 144, 350, 696
Bsh1285I CGRYCG 2 cut(s) 25, 1009
BshFI GGCC 3 cut(s) 61, 1723, 1750
BshNI GGYRCC 2 cut(s) 615, 1341
BshTI ACCGGT 1 cut(s) 1504
BsiEI CGRYCG 2 cut(s) 25, 1009
BsiHKAI GWGCWC 5 cut(s) 72, 378, 812, 1066, 2278
BslFI GGGAC 3 cut(s) 1016, 1920, 2627
BslI CCNNNNNNNGG 4 cut(s) 153, 1374, 1904, 2173
BsmAI GTCTC 4 cut(s) 96, 252, 1607, 2746
BsmFI GGGAC 3 cut(s) 1016, 1920, 2627
BsnI GGCC 3 cut(s) 61, 1723, 1750
Bsp1286I GDGCHC 6 cut(s) 72, 378, 732, 812, 1066, 2278
Bsp13I TCCGGA 1 cut(s) 2353
Bsp1407I TGTACA 2 cut(s) 559, 844
BspANI GGCC 3 cut(s) 61, 1723, 1750
BspCNI CTCAG 3 cut(s) 352, 777, 2896
BspEI TCCGGA 1 cut(s) 2353
BspFNI CGCG 5 cut(s) 39, 58, 144, 350, 696
BspHI TCATGA 2 cut(s) 1417, 2725
BspLI GGNNCC 8 cut(s) 617, 1134, 1343, 1503, 1554, 1908, 2358, 2790
BspMAI CTGCAG 2 cut(s) 427, 2247
BspPI GGATC 4 cut(s) 132, 319, 1826, 2309
BspQI GCTCTTC 2 cut(s) 1935, 2060
BspT107I GGYRCC 2 cut(s) 615, 1341
BsrDI GCAATG 4 cut(s) 1084, 1222, 1800, 1920
BsrFI RCCGGY 4 cut(s) 27, 44, 305, 1504
BsrGI TGTACA 2 cut(s) 559, 844
BsrI ACTGG 6 cut(s) 529, 732, 822, 1493, 2271, 2487
BssAI RCCGGY 4 cut(s) 27, 44, 305, 1504
BssECI CCNNGG 8 cut(s) 619, 620, 664, 1359, 2036, 2596, 2792, 2970
BssSI CACGAG 1 cut(s) 2442
BssT1I CCWWGG 2 cut(s) 2792, 2970
Bst2BI CACGAG 1 cut(s) 2442
Bst2UI CCWGG 8 cut(s) 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
Bst6I CTCTTC 5 cut(s) 329, 443, 1935, 2060, 2931
BstAPI GCANNNNNTGC 1 cut(s) 687
BstAUI TGTACA 2 cut(s) 559, 844
BstDEI CTNAG 8 cut(s) 360, 785, 998, 1544, 1693, 1968, 2327, 2904
BstDSI CCRYGG 3 cut(s) 664, 2036, 2596
BstENI CCTNNNNNAGG 1 cut(s) 2171
BstFNI CGCG 5 cut(s) 39, 58, 144, 350, 696
BstH2I RGCGCY 1 cut(s) 1811
BstHHI GCGC 5 cut(s) 39, 146, 211, 696, 1810
BstMAI GTCTC 4 cut(s) 96, 252, 1607, 2746
BstMCI CGRYCG 2 cut(s) 25, 1009
BstMWI GCNNNNNNNGC 7 cut(s) 45, 67, 138, 141, 600, 660, 687
BstNI CCWGG 8 cut(s) 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
BstNSI RCATGY 2 cut(s) 1708, 2555
BstPAI GACNNNNGTC 1 cut(s) 975
BstSCI CCNGG 9 cut(s) 61, 225, 619, 1015, 1337, 2166, 2317, 2628, 2655
BstSFI CTRYAG 4 cut(s) 423, 1816, 2243, 2700
BstUI CGCG 5 cut(s) 39, 58, 144, 350, 696
BstV1I GCAGC 6 cut(s) 119, 1254, 1409, 1817, 1959, 2053
BstV2I GAAGAC 2 cut(s) 285, 2091
BstX2I RGATCY 1 cut(s) 2330
BstYI RGATCY 1 cut(s) 2330
BsuI GTATCC 1 cut(s) 2636
BsuRI GGCC 3 cut(s) 61, 1723, 1750
BtgI CCRYGG 3 cut(s) 664, 2036, 2596
BtrI CACGTC 1 cut(s) 287
BtsI GCAGTG 3 cut(s) 562, 1975, 3023
CaiI CAGNNNCTG 4 cut(s) 751, 945, 2309, 2737
CciI TCATGA 2 cut(s) 1417, 2725
CfoI GCGC 5 cut(s) 39, 146, 211, 696, 1810
Cfr10I RCCGGY 4 cut(s) 27, 44, 305, 1504
Cfr13I GGNCC 4 cut(s) 60, 345, 1132, 1907
CseI GACGC 1 cut(s) 28
Csp6I GTAC 7 cut(s) 560, 616, 845, 881, 901, 2653, 2740
CspAI ACCGGT 1 cut(s) 1504
CviAII CATG 8 cut(s) 1185, 1418, 1705, 2075, 2283, 2494, 2552, 2726
CviQI GTAC 7 cut(s) 560, 616, 845, 881, 901, 2653, 2740
DdeI CTNAG 8 cut(s) 360, 785, 998, 1544, 1693, 1968, 2327, 2904
DriI GACNNNNNGTC 1 cut(s) 1539
EaeI YGGCCR 2 cut(s) 1721, 1748
Eam1104I CTCTTC 5 cut(s) 329, 443, 1935, 2060, 2931
Eam1105I GACNNNNNGTC 1 cut(s) 1539
EarI CTCTTC 5 cut(s) 329, 443, 1935, 2060, 2931
EciI GGCGGA 1 cut(s) 324
Ecl136II GAGCTC 3 cut(s) 70, 810, 1064
Eco130I CCWWGG 2 cut(s) 2792, 2970
Eco24I GRGCYC 4 cut(s) 72, 732, 812, 1066
Eco47I GGWCC 3 cut(s) 345, 1132, 1907
Eco47III AGCGCT 1 cut(s) 1809
Eco53kI GAGCTC 3 cut(s) 70, 810, 1064
Eco57I CTGAAG 3 cut(s) 1902, 2103, 2955
EcoICRI GAGCTC 3 cut(s) 70, 810, 1064
EcoNI CCTNNNNNAGG 1 cut(s) 2171
EcoRI GAATTC 1 cut(s) 1796
EcoRII CCWGG 8 cut(s) 225, 619, 1015, 1337, 2166, 2317, 2628, 2655
EcoT14I CCWWGG 2 cut(s) 2792, 2970
EcoT22I ATGCAT 1 cut(s) 1710
EcoT38I GRGCYC 4 cut(s) 72, 732, 812, 1066
ErhI CCWWGG 2 cut(s) 2792, 2970
FaeI CATG 8 cut(s) 1188, 1421, 1708, 2078, 2286, 2497, 2555, 2729
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 3 cut(s) 1016, 1920, 2627
FatI CATG 8 cut(s) 1184, 1417, 1704, 2074, 2282, 2493, 2551, 2725
FauI CCCGC 2 cut(s) 1690, 2830
FbaI TGATCA 2 cut(s) 2404, 2728
FriOI GRGCYC 4 cut(s) 72, 732, 812, 1066
FspBI CTAG 2 cut(s) 1055, 2231
GlaI GCGC 5 cut(s) 38, 145, 210, 695, 1809
GsaI CCCAGC 2 cut(s) 1093, 3053
GsuI CTGGAG 3 cut(s) 839, 1038, 2678
HaeII RGCGCY 1 cut(s) 1811
HaeIII GGCC 3 cut(s) 61, 1723, 1750
HgaI GACGC 1 cut(s) 28
HhaI GCGC 5 cut(s) 39, 146, 211, 696, 1810
Hin1II CATG 8 cut(s) 1188, 1421, 1708, 2078, 2286, 2497, 2555, 2729
Hin6I GCGC 5 cut(s) 37, 144, 209, 694, 1808
HinP1I GCGC 5 cut(s) 37, 144, 209, 694, 1808
HincII GTYRAC 1 cut(s) 2238
HindII GTYRAC 1 cut(s) 2238
HphI GGTGA 9 cut(s) 421, 503, 518, 1034, 1519, 1664, 1967, 2828, 3001
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 7 cut(s) 400, 1022, 1877, 2116, 2248, 2499, 2507
HpyCH4IV ACGT 3 cut(s) 286, 1201, 2163
HpyF10VI GCNNNNNNNGC 7 cut(s) 45, 67, 138, 141, 600, 660, 687
HpyF3I CTNAG 8 cut(s) 360, 785, 998, 1544, 1693, 1968, 2327, 2904
HpySE526I ACGT 3 cut(s) 286, 1201, 2163
Hsp92II CATG 8 cut(s) 1188, 1421, 1708, 2078, 2286, 2497, 2555, 2729
HspAI GCGC 5 cut(s) 37, 144, 209, 694, 1808
Kpn2I TCCGGA 1 cut(s) 2353
KpnI GGTACC 1 cut(s) 619
KroI GCCGGC 2 cut(s) 44, 305
KroNI GCCGGC 2 cut(s) 46, 307
Ksp22I TGATCA 2 cut(s) 2404, 2728
LguI GCTCTTC 2 cut(s) 1935, 2060
LmnI GCTCC 5 cut(s) 149, 373, 513, 1815, 2788
Lsp1109I GCAGC 6 cut(s) 119, 1254, 1409, 1817, 1959, 2053
LweI GCATC 7 cut(s) 637, 1432, 1981, 2331, 2512, 2524, 3036
MaeI CTAG 2 cut(s) 1055, 2231
MaeII ACGT 3 cut(s) 286, 1201, 2163
MfeI CAATTG 2 cut(s) 910, 958
MflI RGATCY 1 cut(s) 2330
MhlI GDGCHC 6 cut(s) 72, 378, 732, 812, 1066, 2278
MlsI TGGCCA 2 cut(s) 1723, 1750
MluNI TGGCCA 2 cut(s) 1723, 1750
MlyI GAGTC 5 cut(s) 365, 371, 377, 503, 2728
MmeI TCCRAC 3 cut(s) 345, 351, 2565
Mox20I TGGCCA 2 cut(s) 1723, 1750
Mph1103I ATGCAT 1 cut(s) 1710
MreI CGCCGGCG 1 cut(s) 305
MroI TCCGGA 1 cut(s) 2353
MroNI GCCGGC 2 cut(s) 44, 305
MroXI GAANNNNTTC 1 cut(s) 2349
MscI TGGCCA 2 cut(s) 1723, 1750
MslI CAYNNNNRTG 3 cut(s) 888, 2281, 2814
Msp20I TGGCCA 2 cut(s) 1723, 1750
MspA1I CMGCKG 3 cut(s) 132, 538, 2837
MspR9I CCNGG 9 cut(s) 63, 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
MunI CAATTG 2 cut(s) 910, 958
MvaI CCWGG 8 cut(s) 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
MvnI CGCG 5 cut(s) 39, 58, 144, 350, 696
MwoI GCNNNNNNNGC 7 cut(s) 45, 67, 138, 141, 600, 660, 687
NaeI GCCGGC 2 cut(s) 46, 307
NciI CCSGG 1 cut(s) 63
NgoMIV GCCGGC 2 cut(s) 44, 305
NlaIII CATG 8 cut(s) 1188, 1421, 1708, 2078, 2286, 2497, 2555, 2729
NlaIV GGNNCC 8 cut(s) 617, 1134, 1343, 1503, 1554, 1908, 2358, 2790
NmeAIII GCCGAG 1 cut(s) 743
NmuCI GTSAC 7 cut(s) 287, 524, 905, 1820, 1963, 2489, 2576
NsiI ATGCAT 1 cut(s) 1710
NspI RCATGY 2 cut(s) 1708, 2555
PaeI GCATGC 2 cut(s) 1708, 2555
PagI TCATGA 2 cut(s) 1417, 2725
PasI CCCWGGG 1 cut(s) 620
PciSI GCTCTTC 2 cut(s) 1935, 2060
PcsI WCGNNNNNNNCGW 1 cut(s) 1467
PdiI GCCGGC 2 cut(s) 46, 307
PdmI GAANNNNTTC 1 cut(s) 2349
PflFI GACNNNGTC 1 cut(s) 2591
PfoI TCCNGGA 1 cut(s) 2628
PinAI ACCGGT 1 cut(s) 1504
PleI GAGTC 5 cut(s) 364, 370, 376, 502, 2728
PpsI GAGTC 5 cut(s) 364, 370, 376, 502, 2728
PshAI GACNNNNGTC 1 cut(s) 975
PshBI ATTAAT 1 cut(s) 1665
Psp124BI GAGCTC 3 cut(s) 72, 812, 1066
Psp6I CCWGG 8 cut(s) 225, 619, 1015, 1337, 2166, 2317, 2628, 2655
PspFI CCCAGC 2 cut(s) 1089, 3049
PspGI CCWGG 8 cut(s) 225, 619, 1015, 1337, 2166, 2317, 2628, 2655
PspN4I GGNNCC 8 cut(s) 617, 1134, 1343, 1503, 1554, 1908, 2358, 2790
PspPI GGNCC 4 cut(s) 60, 345, 1132, 1907
PstI CTGCAG 2 cut(s) 427, 2247
PstNI CAGNNNCTG 4 cut(s) 751, 945, 2309, 2737
PsuI RGATCY 1 cut(s) 2330
PsyI GACNNNGTC 1 cut(s) 2591
RsaI GTAC 7 cut(s) 561, 617, 846, 882, 902, 2654, 2741
RsaNI GTAC 7 cut(s) 560, 616, 845, 881, 901, 2653, 2740
RseI CAYNNNNRTG 3 cut(s) 888, 2281, 2814
SacI GAGCTC 3 cut(s) 72, 812, 1066
SapI GCTCTTC 2 cut(s) 1935, 2060
Sau96I GGNCC 4 cut(s) 60, 345, 1132, 1907
SchI GAGTC 5 cut(s) 365, 371, 377, 503, 2728
ScrFI CCNGG 9 cut(s) 63, 227, 621, 1017, 1339, 2168, 2319, 2630, 2657
SduI GDGCHC 6 cut(s) 72, 378, 732, 812, 1066, 2278
SfaNI GCATC 7 cut(s) 637, 1432, 1981, 2331, 2512, 2524, 3036
SfcI CTRYAG 4 cut(s) 423, 1816, 2243, 2700
SgrAI CRCCGGYG 2 cut(s) 27, 305
SinI GGWCC 3 cut(s) 345, 1132, 1907
SmiMI CAYNNNNRTG 3 cut(s) 888, 2281, 2814
SmlI CTYRAG 2 cut(s) 71, 1326
SmoI CTYRAG 2 cut(s) 71, 1326
SphI GCATGC 2 cut(s) 1708, 2555
SspI AATATT 1 cut(s) 1669
SspMI CTAG 2 cut(s) 1055, 2231
SstI GAGCTC 3 cut(s) 72, 812, 1066
StyD4I CCNGG 9 cut(s) 61, 225, 619, 1015, 1337, 2166, 2317, 2628, 2655
StyI CCWWGG 2 cut(s) 2792, 2970
TaiI ACGT 3 cut(s) 289, 1204, 2166
TaqI TCGA 4 cut(s) 383, 1470, 2313, 2781
TatI WGTACW 5 cut(s) 559, 844, 880, 900, 2739
TauI GCSGC 8 cut(s) 16, 19, 61, 132, 144, 165, 173, 176
TseFI GTSAC 7 cut(s) 287, 524, 905, 1820, 1963, 2489, 2576
TseI GCWGC 6 cut(s) 132, 1267, 1397, 1805, 1972, 2041
Tsp45I GTSAC 7 cut(s) 287, 524, 905, 1820, 1963, 2489, 2576
TspGWI ACGGA 3 cut(s) 297, 2585, 2933
Tth111I GACNNNGTC 1 cut(s) 2591
VpaK11BI GGWCC 3 cut(s) 345, 1132, 1907
VspI ATTAAT 1 cut(s) 1665
XagI CCTNNNNNAGG 1 cut(s) 2171
XapI RAATTY 6 cut(s) 638, 1241, 1796, 2059, 2675, 3040
XbaI TCTAGA 1 cut(s) 1054
XceI RCATGY 2 cut(s) 1708, 2555
XcmI CCANNNNNNNNNTGG 1 cut(s) 1639
XmnI GAANNNNTTC 1 cut(s) 2349
XspI CTAG 2 cut(s) 1055, 2231
Zsp2I ATGCAT 1 cut(s) 1710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.