Rorug01G0404900

prolyl 4-hydroxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015281
Physical Location & Seq
Forward (+)
51173773 .. 51177690
3918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0404900.1

Sequence Viewer

Length: 1059 bp
ATGGGTGAGGGTGAAAGGTTTCAGCTTGGGACAGTGGGGGCGTTGACTCTCTCTGTGGTTTCTTCTGTCTCCATTGTCATTTGCAACAAGGCCCTCATTAGCTCTCTGGGTTTCACTTTTGCTACAACTTTGACAAGCTGGCATCTATTAGTCACGTTTTGTTCCCTTCATGTGGCTTTGAGGATGAGATTCTTTGAACACAAACCTCTGGATCAAAAGACTGTTACGGGGTTTGGTGTTCTGAATGGGATCTCCATAGGACTTTTAAACCTGAGCCTGGGGTTCAATTCTGTTGGCTTTTATCAGATGACTAAACTGGCAATCATCCCTTGTACTGTACTATTGGAGACCCTTTTTCTTGGGAAGAAATTCAGTAGGAGCATTCAGTTTGCCCTCCTTATCCTCCTTTTTGGTGTTGGGATTGCTACGGTTACTGACGTTCAACTCAATGCTCTAGGAAGTATCTTGTCTCTACTTGCAATTCTTACAACATGCGTTGCTCAAATTATGACCAATACCATCCAGAAGAAGTATAAGGTTTCTTCAACACAACTTCTATATCAATCATGTCCCTATCAGTCGGGGACATTATTGATATCTGGCCCATTTCTGGATTGGTTTTTGACTAATCAGAATGTATTTGCTTTCAAATACACAACTCAAGTACTGGTGTTCATTATTCTATCCTGCCTGATCTCCGTGTCTGTAAATTTTAGCACATTTCTTGTGATTGGAAAGACATCTCCCGTCACCTATCAAGTTCTTGGACATCTGAAGACATGTCTTGTGCTTGCGTTTGGTTATACTTTGCTTCATGATCCATTTGACTGGAAGAACATCCTAGGAATTTTGGTTGCAATTATGGGGATGGTTTTATATTCTTATTTTTGCACTCGGGAGGGTCAGAAAAAGGTCGCTGAAGAAGCAACACAGCAATCAAAGGCAGGGGAAGGTGAAACCGAACCTCTAGTGAGTGTGGAAAATGGAAGCGGATTAAAGCTCGCTGTTACTCAGATGTCCCCCCCTTCATGGAAGTCAAACAAAGATCTACACGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 map00330 map01100
Pfam Domains
Protein Families
2OG-FeII_Oxy_3 ShK

Protein Analysis

352

Amino Acids

38.45

Weight (kDa)

8.94

Isoelectric Point (pI)

28.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 21 - 294 1.2e-18 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25600 AT4G25600 AT4G25600 AT4G25600
fragaria_vesca FvH4_7g29771 FvH4_7g29771
malus_domestica MD07G1273300.v1.1
prunus_persica Prupe.2G297000_v2.0.a1
pyrus_communis pycom07g24990
rosa_chinensis RchiOBHm_Chr1g0377771
rosa_laevigata RLG00000026500
rosa_multiflora Rmu_sc0005758.1_g000003
rosa_roxburghii Rroxscaffold_4G00281070
rosa_rugosa Rorug01G0404900
rosa_samantha Rh1AG427400
rosa_wichuraiana Rw1G037110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1055
AciI CCGC 1 cut(s) 990
AclWI GGATC 3 cut(s) 219, 257, 812
AcsI RAATTY 3 cut(s) 368, 709, 846
AcuI CTGAAG 2 cut(s) 794, 939
AfaI GTAC 3 cut(s) 334, 339, 666
AfiI CCNNNNNNNGG 4 cut(s) 172, 277, 610, 1029
AflIII ACRYGT 2 cut(s) 779, 1053
AgsI TTSAA 5 cut(s) 197, 286, 443, 546, 649
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 4 cut(s) 25, 102, 138, 1000
AluI AGCT 4 cut(s) 25, 102, 138, 1000
Alw26I GTCTC 3 cut(s) 73, 341, 474
AlwI GGATC 3 cut(s) 219, 257, 812
Ama87I CYCGRG 1 cut(s) 894
AoxI GGCC 2 cut(s) 90, 601
ApoI RAATTY 3 cut(s) 368, 709, 846
Asp700I GAANNNNTTC 2 cut(s) 18, 368
AspA2I CCTAGG 1 cut(s) 841
AspS9I GGNCC 2 cut(s) 91, 602
AsuHPI GGTGA 4 cut(s) 17, 23, 742, 965
AvaI CYCGRG 1 cut(s) 894
AvrII CCTAGG 1 cut(s) 841
BbsI GAAGAC 1 cut(s) 782
BccI CCATC 2 cut(s) 527, 862
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 3 cut(s) 73, 341, 474
BfaI CTAG 3 cut(s) 455, 842, 968
BglII AGATCT 1 cut(s) 1045
BlnI CCTAGG 1 cut(s) 841
BmcAI AGTACT 1 cut(s) 666
Bme1390I CCNGG 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 894
BmgT120I GGNCC 2 cut(s) 91, 602
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 782
Bpu10I CCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 277, 841
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 277, 610, 1029
Bse1I ACTGG 3 cut(s) 321, 672, 833
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 277, 841
BseGI GGATG 5 cut(s) 189, 324, 519, 837, 873
BseLI CCNNNNNNNGG 4 cut(s) 172, 277, 610, 1029
BseMII CTCAG 2 cut(s) 263, 1025
BseNI ACTGG 3 cut(s) 321, 672, 833
Bsh1236I CGCG 1 cut(s) 1055
BshFI GGCC 2 cut(s) 92, 603
BsiHKCI CYCGRG 1 cut(s) 894
BslFI GGGAC 4 cut(s) 43, 555, 598, 1003
BslI CCNNNNNNNGG 4 cut(s) 172, 277, 610, 1029
BsmAI GTCTC 3 cut(s) 73, 341, 474
BsmFI GGGAC 4 cut(s) 43, 555, 598, 1003
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 2 cut(s) 92, 603
Bso31I GGTCTC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 894
Bsp143I GATC 5 cut(s) 211, 249, 693, 817, 1045
BspACI CCGC 1 cut(s) 990
BspANI GGCC 2 cut(s) 92, 603
BspCNI CTCAG 2 cut(s) 264, 1024
BspFNI CGCG 1 cut(s) 1055
BspHI TCATGA 1 cut(s) 814
BspPI GGATC 3 cut(s) 219, 257, 812
BspTNI GGTCTC 1 cut(s) 341
BsrI ACTGG 3 cut(s) 321, 672, 833
BssECI CCNNGG 2 cut(s) 277, 841
BssMI GATC 5 cut(s) 211, 249, 693, 817, 1045
BssT1I CCWWGG 1 cut(s) 841
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 4 cut(s) 34, 223, 337, 430
BstC8I GCNNGC 3 cut(s) 140, 792, 1002
BstDEI CTNAG 2 cut(s) 272, 1011
BstF5I GGATG 5 cut(s) 189, 324, 519, 837, 873
BstFNI CGCG 1 cut(s) 1055
BstKTI GATC 5 cut(s) 214, 252, 696, 820, 1048
BstMAI GTCTC 3 cut(s) 73, 341, 474
BstMBI GATC 5 cut(s) 211, 249, 693, 817, 1045
BstMWI GCNNNNNNNGC 1 cut(s) 923
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 2 cut(s) 495, 783
BstSCI CCNGG 1 cut(s) 276
BstUI CGCG 1 cut(s) 1055
BstV2I GAAGAC 1 cut(s) 782
BstX2I RGATCY 2 cut(s) 249, 1045
BstXI CCANNNNNNTGG 1 cut(s) 828
BstYI RGATCY 2 cut(s) 249, 1045
BsuRI GGCC 2 cut(s) 92, 603
BtsCI GGATG 5 cut(s) 189, 324, 519, 837, 873
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 140, 792, 1002
CciI TCATGA 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 91, 602
Csp6I GTAC 3 cut(s) 333, 338, 665
CviAII CATG 6 cut(s) 170, 492, 567, 780, 815, 1029
CviJI RGCY 9 cut(s) 25, 92, 102, 138, 176, 276, 297, 603, 1000
CviKI_1 RGCY 9 cut(s) 25, 92, 102, 138, 176, 276, 297, 603, 1000
CviQI GTAC 3 cut(s) 333, 338, 665
DdeI CTNAG 2 cut(s) 272, 1011
DpnI GATC 5 cut(s) 213, 251, 695, 819, 1047
DpnII GATC 5 cut(s) 211, 249, 693, 817, 1045
DraI TTTAAA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 841
Eco31I GGTCTC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 597
Eco57I CTGAAG 2 cut(s) 794, 939
Eco88I CYCGRG 1 cut(s) 894
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 276
EcoRV GATATC 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 841
ErhI CCWWGG 1 cut(s) 841
FaeI CATG 6 cut(s) 173, 495, 570, 783, 818, 1032
FaqI GGGAC 4 cut(s) 43, 555, 598, 1003
FatI CATG 6 cut(s) 169, 491, 566, 779, 814, 1028
FokI GGATG 5 cut(s) 196, 311, 506, 824, 880
FspBI CTAG 3 cut(s) 455, 842, 968
HaeIII GGCC 2 cut(s) 92, 603
Hin1II CATG 6 cut(s) 173, 495, 570, 783, 818, 1032
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 2 cut(s) 46, 189
HphI GGTGA 4 cut(s) 17, 23, 742, 965
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 6 cut(s) 243, 306, 633, 774, 906, 1014
Hpy188III TCNNGA 5 cut(s) 209, 523, 611, 815, 896
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 3 cut(s) 176, 944, 1035
HpyCH4III ACNGT 4 cut(s) 34, 223, 337, 430
HpyCH4IV ACGT 2 cut(s) 155, 438
HpyCH4V TGCA 4 cut(s) 84, 479, 857, 891
HpyF10VI GCNNNNNNNGC 1 cut(s) 923
HpyF3I CTNAG 2 cut(s) 272, 1011
HpySE526I ACGT 2 cut(s) 155, 438
Hsp92II CATG 6 cut(s) 173, 495, 570, 783, 818, 1032
Kzo9I GATC 5 cut(s) 211, 249, 693, 817, 1045
LmnI GCTCC 1 cut(s) 378
LweI GCATC 1 cut(s) 151
MaeI CTAG 3 cut(s) 455, 842, 968
MaeII ACGT 2 cut(s) 155, 438
MaeIII GTNAC 5 cut(s) 151, 223, 430, 748, 1006
MalI GATC 5 cut(s) 213, 251, 695, 819, 1047
MboI GATC 5 cut(s) 211, 249, 693, 817, 1045
MboII GAAGA 7 cut(s) 54, 376, 534, 538, 787, 844, 932
MflI RGATCY 2 cut(s) 249, 1045
MluCI AATT 7 cut(s) 286, 368, 480, 504, 709, 846, 858
MluI ACGCGT 1 cut(s) 1053
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 7 cut(s) 104, 174, 216, 404, 413, 892, 975
MroXI GAANNNNTTC 2 cut(s) 18, 368
MseI TTAA 2 cut(s) 266, 995
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 1055
MwoI GCNNNNNNNGC 1 cut(s) 923
NdeII GATC 5 cut(s) 211, 249, 693, 817, 1045
NlaIII CATG 6 cut(s) 173, 495, 570, 783, 818, 1032
NmuCI GTSAC 2 cut(s) 151, 748
NspI RCATGY 2 cut(s) 495, 783
PagI TCATGA 1 cut(s) 814
PciI ACATGT 1 cut(s) 779
PctI GAATGC 1 cut(s) 381
PdmI GAANNNNTTC 2 cut(s) 18, 368
PfeI GAWTC 1 cut(s) 189
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PscI ACATGT 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspPI GGNCC 2 cut(s) 91, 602
PsuI RGATCY 2 cut(s) 249, 1045
RsaI GTAC 3 cut(s) 334, 339, 666
RsaNI GTAC 3 cut(s) 333, 338, 665
SaqAI TTAA 2 cut(s) 266, 995
Sau3AI GATC 5 cut(s) 211, 249, 693, 817, 1045
Sau96I GGNCC 2 cut(s) 91, 602
ScaI AGTACT 1 cut(s) 666
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 278
SfaNI GCATC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
Sse9I AATT 7 cut(s) 286, 368, 480, 504, 709, 846, 858
SsiI CCGC 1 cut(s) 990
SspMI CTAG 3 cut(s) 455, 842, 968
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 841
TaaI ACNGT 4 cut(s) 34, 223, 337, 430
TaiI ACGT 2 cut(s) 158, 441
TasI AATT 7 cut(s) 286, 368, 480, 504, 709, 846, 858
TatI WGTACW 3 cut(s) 332, 337, 664
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 2 cut(s) 266, 995
Tru9I TTAA 2 cut(s) 266, 995
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 2 cut(s) 151, 748
Tsp45I GTSAC 2 cut(s) 151, 748
TspDTI ATGAA 4 cut(s) 158, 664, 803, 1017
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 1 cut(s) 39
XapI RAATTY 3 cut(s) 368, 709, 846
XceI RCATGY 2 cut(s) 495, 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 612
XmaJI CCTAGG 1 cut(s) 841
XmnI GAANNNNTTC 2 cut(s) 18, 368
XspI CTAG 3 cut(s) 455, 842, 968
ZrmI AGTACT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.