Rw1G037110

prolyl 4-hydroxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015281
Physical Location & Seq
Forward (+)
64841989 .. 64843832
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037110.1

Sequence Viewer

Length: 933 bp
ATGGCTTCTTCGCTTCTCTCAATCTTTCTTCTTTTGCCGATCTTCTCCATCTCCTCCTGCTCTGCCGAAACCAGGAAGGAGTTAAGGAGTAAGGAATTCAACCAGGAAGCATTGATACAGTTGGGTCACTCGGTTGATTACAACAGAATTGACCCGTCAAGGGTTGTTCAACTTTCTTGGCGACCAAGGGTGTTTCTGTACAAAGGATTCCTATCTGCTGAGGAGTGTGATCACCTTATTTCTTTGGCAAATGGTGGAGAAGAGAAGTCTTCAACAGAATATGATGAAGCTGGAAACAGCAACACAAATAGGATGCTTAAAAGTTTAGACCTTCCCTTGAGCACTGGGGATGGTATAGTTTCAAAGATTGAGGAAAAGATCTCGGCCTGGACTTTCCTTCCTAAAGAGAACAGCAGAGCTTTACAGGTTTTGCATTACGACCTTGAGGATGCAGAGAAGAATTACAATTATTTTGGCAACAAATCCACATTGGAACAAAGTGAGCCCTTGTTAGCAACAGTTATTCTTTATCTCTCAAACGTCACTCGTGGTGGTGAGATTCTATTCCCGGAGTCAGAGCTGAAGAGCAATGCTCAGTCTCGTTGTGGAAAGAGTAGCAGTATCTTGAAACCAACCAAAGGAAACGCAATTCTGTTTTTCAATCTCCATCTTAATGCATCTCCCGACAAGAGCAGTTCCCATGCCCGATGCCCCGTACTCGAAGGCGAAATGTGGTGCGCCACAAAGTTCCTTCATGTGAAAGCCATTCCTCAGGAAAATTCCTCCTCCAATTCTGATAGCAGTGATTGCACTGATGAAGACGATAGCTGTCCCAGGTGGGCAGACATTGGGGAGTGTCAAAGGAACCCTGTATTCATGATTGGCTCCGATGATTACTACGGTACATGCAGGAAGAGTTGTAATGCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 map00330 map01100
Pfam Domains
Protein Families
2OG-FeII_Oxy_3 ShK

Protein Analysis

310

Amino Acids

34.51

Weight (kDa)

5.2

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25600 AT4G25600 AT4G25600 AT4G25600
fragaria_vesca FvH4_7g29771 FvH4_7g29771
malus_domestica MD07G1273300.v1.1
prunus_persica Prupe.2G297000_v2.0.a1
pyrus_communis pycom07g24990
rosa_chinensis RchiOBHm_Chr1g0377771
rosa_laevigata RLG00000026500
rosa_multiflora Rmu_sc0005758.1_g000003
rosa_roxburghii Rroxscaffold_4G00281070
rosa_rugosa Rorug01G0404900
rosa_samantha Rh1AG427400
rosa_wichuraiana Rw1G037110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 95, 778
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 3 cut(s) 200, 717, 904
AfiI CCNNNNNNNGG 3 cut(s) 72, 160, 638
AgsI TTSAA 6 cut(s) 100, 170, 273, 363, 628, 661
AjnI CCWGG 4 cut(s) 71, 102, 386, 833
AluBI AGCT 4 cut(s) 290, 419, 580, 828
AluI AGCT 4 cut(s) 290, 419, 580, 828
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 603
AoxI GGCC 1 cut(s) 384
ApoI RAATTY 2 cut(s) 95, 778
AspLEI GCGC 1 cut(s) 740
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 224, 566
AxyI CCTNAGG 1 cut(s) 771
BanII GRGCYC 1 cut(s) 507
BarI GAAGNNNNNNTAC 2 cut(s) 99, 131
BauI CACGAG 1 cut(s) 546
BbsI GAAGAC 2 cut(s) 261, 825
Bbv12I GWGCWC 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 219
BccI CCATC 3 cut(s) 56, 344, 675
BciT130I CCWGG 4 cut(s) 73, 104, 388, 835
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 1 cut(s) 603
BglII AGATCT 1 cut(s) 378
Bme1390I CCNGG 5 cut(s) 73, 104, 388, 569, 835
BmiI GGNNCC 2 cut(s) 866, 886
BmrFI CCNGG 5 cut(s) 73, 104, 388, 569, 835
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 4 cut(s) 303, 439, 686, 698
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 2 cut(s) 261, 825
BplI GAGNNNNNCTC 2 cut(s) 577, 609
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 358, 464
BpuMI CCSGG 1 cut(s) 569
BsaBI GATNNNNATC 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 185, 833
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 160, 638
Bse1I ACTGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 771
Bse3DI GCAATG 1 cut(s) 595
Bse8I GATNNNNATC 1 cut(s) 211
BseBI CCWGG 4 cut(s) 73, 104, 388, 835
BseDI CCNNGG 2 cut(s) 185, 833
BseGI GGATG 3 cut(s) 318, 355, 454
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 72, 160, 638
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 3 cut(s) 210, 608, 785
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 3 cut(s) 43, 236, 775
BshFI GGCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 3 cut(s) 72, 160, 638
BsmAI GTCTC 1 cut(s) 603
BsmFI GGGAC 1 cut(s) 816
BsnI GGCC 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 344, 507
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 39, 229, 378
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 3 cut(s) 211, 607, 784
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 2 cut(s) 866, 886
BspQI GCTCTTC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 595
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 185, 833
BssMI GATC 3 cut(s) 39, 229, 378
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 4 cut(s) 73, 104, 388, 835
Bst4CI ACNGT 3 cut(s) 120, 520, 902
Bst6I CTCTTC 3 cut(s) 255, 578, 908
BstAPI GCANNNNNTGC 1 cut(s) 807
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 928
BstDEI CTNAG 3 cut(s) 219, 594, 771
BstF5I GGATG 3 cut(s) 318, 355, 454
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 3 cut(s) 42, 232, 381
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 3 cut(s) 39, 229, 378
BstMWI GCNNNNNNNGC 1 cut(s) 807
BstNI CCWGG 4 cut(s) 73, 104, 388, 835
BstNSI RCATGY 2 cut(s) 909, 930
BstSCI CCNGG 5 cut(s) 71, 102, 386, 567, 833
BstV2I GAAGAC 2 cut(s) 261, 825
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
Bsu36I CCTNAGG 1 cut(s) 771
BsuRI GGCC 1 cut(s) 386
BtsCI GGATG 3 cut(s) 318, 355, 454
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 3 cut(s) 342, 808, 810
Cac8I GCNNGC 1 cut(s) 928
CciI TCATGA 1 cut(s) 876
CfoI GCGC 1 cut(s) 740
Csp6I GTAC 3 cut(s) 199, 716, 903
CviAII CATG 5 cut(s) 701, 755, 877, 906, 927
CviJI RGCY 9 cut(s) 5, 290, 386, 419, 505, 580, 764, 828, 885
CviKI_1 RGCY 9 cut(s) 5, 290, 386, 419, 505, 580, 764, 828, 885
CviQI GTAC 3 cut(s) 199, 716, 903
DdeI CTNAG 3 cut(s) 219, 594, 771
DpnI GATC 3 cut(s) 41, 231, 380
DpnII GATC 3 cut(s) 39, 229, 378
Eam1104I CTCTTC 3 cut(s) 255, 578, 908
EarI CTCTTC 3 cut(s) 255, 578, 908
Eco130I CCWWGG 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 602
Eco81I CCTNAGG 1 cut(s) 771
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 4 cut(s) 71, 102, 386, 833
EcoT14I CCWWGG 1 cut(s) 185
EcoT22I ATGCAT 2 cut(s) 679, 928
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 5 cut(s) 704, 758, 880, 909, 930
FaiI YATR 7 cut(s) 282, 356, 702, 756, 878, 907, 928
FaqI GGGAC 1 cut(s) 816
FatI CATG 5 cut(s) 700, 754, 876, 905, 926
FbaI TGATCA 1 cut(s) 229
FokI GGATG 3 cut(s) 325, 362, 461
FriOI GRGCYC 1 cut(s) 507
GlaI GCGC 1 cut(s) 739
HaeIII GGCC 1 cut(s) 386
HapII CCGG 1 cut(s) 569
HhaI GCGC 1 cut(s) 740
Hin1II CATG 5 cut(s) 704, 758, 880, 909, 930
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HinfI GANTC 3 cut(s) 207, 559, 572
HpaII CCGG 1 cut(s) 569
HphI GGTGA 2 cut(s) 224, 566
Hpy188I TCNGA 3 cut(s) 577, 796, 889
Hpy188III TCNNGA 4 cut(s) 625, 683, 773, 877
HpyAV CCTTC 5 cut(s) 70, 341, 407, 716, 761
HpyCH4III ACNGT 3 cut(s) 120, 520, 902
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 6 cut(s) 433, 452, 677, 810, 909, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 807
HpyF3I CTNAG 3 cut(s) 219, 594, 771
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 5 cut(s) 704, 758, 880, 909, 930
HspAI GCGC 1 cut(s) 738
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 39, 229, 378
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 1 cut(s) 890
LweI GCATC 4 cut(s) 303, 439, 686, 698
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 125, 541
MalI GATC 3 cut(s) 41, 231, 380
MboI GATC 3 cut(s) 39, 229, 378
MboII GAAGA 8 cut(s) 20, 34, 261, 272, 469, 595, 830, 925
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 2 cut(s) 344, 507
MluCI AATT 7 cut(s) 95, 147, 460, 466, 648, 778, 790
MlyI GAGTC 1 cut(s) 581
MnlI CCTC 7 cut(s) 64, 214, 364, 439, 780, 793, 796
Mph1103I ATGCAT 2 cut(s) 679, 928
MseI TTAA 3 cut(s) 83, 318, 672
MslI CAYNNNNRTG 1 cut(s) 672
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 5 cut(s) 73, 104, 388, 569, 835
MvaI CCWGG 4 cut(s) 73, 104, 388, 835
MwoI GCNNNNNNNGC 1 cut(s) 807
NciI CCSGG 1 cut(s) 569
NdeII GATC 3 cut(s) 39, 229, 378
NlaIII CATG 5 cut(s) 704, 758, 880, 909, 930
NlaIV GGNNCC 2 cut(s) 866, 886
NmeAIII GCCGAG 1 cut(s) 362
NmuCI GTSAC 2 cut(s) 125, 541
NsiI ATGCAT 2 cut(s) 679, 928
NspI RCATGY 2 cut(s) 909, 930
PaeI GCATGC 1 cut(s) 930
PagI TCATGA 1 cut(s) 876
PciSI GCTCTTC 1 cut(s) 578
PfeI GAWTC 2 cut(s) 207, 559
PfoI TCCNGGA 1 cut(s) 567
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
Psp6I CCWGG 4 cut(s) 71, 102, 386, 833
PspGI CCWGG 4 cut(s) 71, 102, 386, 833
PspN4I GGNNCC 2 cut(s) 866, 886
PsuI RGATCY 1 cut(s) 378
RsaI GTAC 3 cut(s) 200, 717, 904
RsaNI GTAC 3 cut(s) 199, 716, 903
RseI CAYNNNNRTG 1 cut(s) 672
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 3 cut(s) 83, 318, 672
Sau3AI GATC 3 cut(s) 39, 229, 378
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 5 cut(s) 73, 104, 388, 569, 835
SduI GDGCHC 2 cut(s) 344, 507
SfaNI GCATC 4 cut(s) 303, 439, 686, 698
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 2 cut(s) 337, 443
SmoI CTYRAG 2 cut(s) 337, 443
SphI GCATGC 1 cut(s) 930
Sse9I AATT 7 cut(s) 95, 147, 460, 466, 648, 778, 790
StyD4I CCNGG 5 cut(s) 71, 102, 386, 567, 833
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 3 cut(s) 120, 520, 902
TaiI ACGT 1 cut(s) 543
TaqI TCGA 1 cut(s) 720
TasI AATT 7 cut(s) 95, 147, 460, 466, 648, 778, 790
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 2 cut(s) 207, 559
Tru1I TTAA 3 cut(s) 83, 318, 672
Tru9I TTAA 3 cut(s) 83, 318, 672
TscAI CASTG 3 cut(s) 349, 808, 817
TseFI GTSAC 2 cut(s) 125, 541
Tsp45I GTSAC 2 cut(s) 125, 541
TspDTI ATGAA 4 cut(s) 300, 743, 831, 865
TspRI CASTG 3 cut(s) 349, 808, 817
XapI RAATTY 2 cut(s) 95, 778
XceI RCATGY 2 cut(s) 909, 930
Zsp2I ATGCAT 2 cut(s) 679, 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.