Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008640

Physical Location & Seq

Genomic Coordinates Forward (+)

52657811 .. 52659089

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0426400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGAGAGGCTGTTCTTGGGGCATTCCTTCTGGTGCTGCCCGATAAGTTAGCGCATCGAGAGGTCTCTCAGTACTTCGGACGCCTTAAGGGAGTTGACAAAAAGGTGCTGGAGAAATGGACTAGAATGTTGACTGCAATTGAAGCGGTGCTTAGTGATGCGAAGGAGAAGCAACTTACACAGAGAGCAAGATTTGGCTTACGTTTTATTGAAGACATATTGGACATATTTGCTACTAAAATGTTGAAACGAAGGATAGAAAGACAAGAAGGAAGCAGACACAAGTTGTCGATCAGCTCACTTTCTAAACTTAAATTCAATTTTAGTCGGAACTCAGAAATCCAGAAGATCACTGATCGGTTAGAAGATATATCTAATCGAGAAAAGCAGTTTGATGGACCTGTGATCGGAAGGGATGAAGCAAAAGCAAAAATTCTTGATGATCTGCTCTCAAATGGCGAACATAGTACCAGTAATTTTCAGAATTTTCATGTGGTTTCCATTGTTGGTACGGGTGGACTAGGAAAGACGACACTTGCTAAACATGTATTCAACGATGCTGTAACAAAACAGTTTTACCCAAAGGGATGGGTGTCTGTGTCCGATGACTTCGACCTTCTAAGGGTGACAACTGCAGTTCTTGAATCTGTGACTTCTGGTGATGTGAAGGAATCCAAAGAGCTCAATTCAGTTCAGGAGAAGTTGATAGGAAGCAAGATCATTGTGACGACACGTGATGCGAATGTTGCAAAGATGATGGGAGACAATAAACCTCATAACTTGGAGTTGATGTCAGAAGATGATTGTTGGAAAATCTTTGTGCACCATGCACTCTTAAACAACAGACCCCAAGATGTTGAGTTACTGAAGGAGAAAATTGTAGTGAAATGCAATGGATTGTCGTTGGTTGCAAGGACTCTTGCTGGTCTTTTACGTTGTAGAAGAGTAGACGAATGGGAAGAAATATTAGACCACAAGATGTGGAATCTATCTGACCAGATGGGCATCCTTCCAGCATTACAATTGAGCTATCATCATCTCCCTTCGAATTTGAAACGATGCTTCACCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

357

Amino Acids

40.61

Weight (kDa)

8.97

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	161 - 235	4.1e-12	NB-ARC domain
NB-ARC	PF00931	234 - 277	3.9e-08	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53460 AT5G53460 AT5G53460
fragaria_vesca	FvH4_7g31770 FvH4_7g31770 FvH4_7g31770
malus_domestica	MD01G1219500.v1.1 MD07G1290500.v1.1
prunus_persica	Prupe.2G311700_v2.0.a1 Prupe.2G311700_v2.0.a1 Prupe.2G311700_v2.0.a1
pyrus_communis	pycom01g22930 pycom07g26320
rosa_chinensis	RchiOBHm_Chr1g0381001
rosa_laevigata	RLG00000026253
rosa_multiflora	Rmu_ssc0000032.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278870
rosa_rugosa	Rorug01G0426400
rosa_samantha	Rh1AG450100 Rh1BG406100 Rh1CG420100 Rh1DG436600
rosa_wichuraiana	Rw1G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	948
AciI	CCGC	1 cut(s)	146
AcsI	RAATTY	4 cut(s)	314, 432, 484, 1048
AcuI	CTGAAG	1 cut(s)	887
AcvI	CACGTG	1 cut(s)	734
AcyI	GRCGYC	1 cut(s)	82
AfaI	GTAC	3 cut(s)	74, 469, 511
AfiI	CCNNNNNNNGG	2 cut(s)	407, 622
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	2 cut(s)	544, 731
AgsI	TTSAA	7 cut(s)	143, 212, 247, 319, 553, 644, 1054
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	3 cut(s)	297, 682, 1029
AluI	AGCT	3 cut(s)	297, 682, 1029
Alw21I	GWGCWC	2 cut(s)	684, 825
Alw26I	GTCTC	2 cut(s)	70, 756
Alw44I	GTGCAC	1 cut(s)	821
ApaLI	GTGCAC	1 cut(s)	821
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	4 cut(s)	314, 432, 484, 1048
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	637, 671, 1057
AsuII	TTCGAA	1 cut(s)	1046
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	825
BanII	GRGCYC	1 cut(s)	684
BbrPI	CACGTG	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	684, 825
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	4 cut(s)	389, 582, 751, 994
BcoDI	GTCTC	2 cut(s)	70, 756
BfaI	CTAG	2 cut(s)	123, 521
BfmI	CTRYAG	1 cut(s)	633
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
BmcAI	AGTACT	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmsI	GCATC	6 cut(s)	64, 148, 547, 727, 1014, 1049
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	1046
BsaAI	YACGTR	1 cut(s)	734
BsaBI	GATNNNNATC	1 cut(s)	1004
BsaHI	GRCGYC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	70
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 776, 806
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 622
Bse1I	ACTGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	898
Bse8I	GATNNNNATC	1 cut(s)	1004
BseGI	GGATG	3 cut(s)	421, 593, 1005
BseJI	GATNNNNATC	1 cut(s)	1004
BseLI	CCNNNNNNNGG	2 cut(s)	407, 622
BseMI	GCAATG	1 cut(s)	898
BseMII	CTCAG	2 cut(s)	83, 348
BseNI	ACTGG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	684, 825
BslI	CCNNNNNNNGG	2 cut(s)	407, 622
BsmAI	GTCTC	2 cut(s)	70, 756
BsmI	GAATGC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	1046
Bsp1286I	GDGCHC	2 cut(s)	684, 825
Bsp143I	GATC	6 cut(s)	291, 348, 355, 405, 442, 717
BspACI	CCGC	1 cut(s)	146
BspCNI	CTCAG	2 cut(s)	82, 347
BspMAI	CTGCAG	1 cut(s)	637
BspT104I	TTCGAA	1 cut(s)	1046
BspTI	CTTAAG	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	898
BsrI	ACTGG	1 cut(s)	471
BssMI	GATC	6 cut(s)	291, 348, 355, 405, 442, 717
BssNI	GRCGYC	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	1 cut(s)	937
BstACI	GRCGYC	1 cut(s)	82
BstAFI	CTTAAG	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	1046
BstDEI	CTNAG	4 cut(s)	69, 152, 334, 620
BstF5I	GGATG	3 cut(s)	421, 593, 1005
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	6 cut(s)	294, 351, 358, 408, 445, 720
BstMAI	GTCTC	2 cut(s)	70, 756
BstMBI	GATC	6 cut(s)	291, 348, 355, 405, 442, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 746
BstNSI	RCATGY	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	825
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	421, 593, 1005
BtsIMutI	CAGTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	73, 468, 510
CviAII	CATG	3 cut(s)	491, 545, 827
CviJI	RGCY	5 cut(s)	11, 198, 297, 682, 1029
CviKI_1	RGCY	5 cut(s)	11, 198, 297, 682, 1029
CviQI	GTAC	3 cut(s)	73, 468, 510
DdeI	CTNAG	4 cut(s)	69, 152, 334, 620
DpnI	GATC	6 cut(s)	293, 350, 357, 407, 444, 719
DpnII	GATC	6 cut(s)	291, 348, 355, 405, 442, 717
Eam1104I	CTCTTC	1 cut(s)	937
EarI	CTCTTC	1 cut(s)	937
Ecl136II	GAGCTC	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	887
Eco72I	CACGTG	1 cut(s)	734
EcoICRI	GAGCTC	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	3 cut(s)	494, 548, 830
FaiI	YATR	8 cut(s)	218, 227, 371, 465, 492, 546, 777, 828
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	3 cut(s)	490, 544, 826
FblI	GTMKAC	1 cut(s)	948
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	3 cut(s)	428, 600, 992
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	2 cut(s)	123, 521
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	494, 548, 830
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	2 cut(s)	97, 132
HindII	GTYRAC	2 cut(s)	97, 132
HinfI	GANTC	4 cut(s)	644, 671, 916, 985
HphI	GGTGA	3 cut(s)	637, 671, 1057
Hpy166II	GTNNAC	5 cut(s)	97, 132, 518, 823, 949
Hpy188I	TCNGA	8 cut(s)	80, 330, 337, 410, 483, 604, 796, 994
Hpy188III	TCNNGA	6 cut(s)	59, 343, 380, 437, 641, 695
Hpy8I	GTNNAC	5 cut(s)	97, 132, 518, 823, 949
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4IV	ACGT	3 cut(s)	202, 733, 934
HpyCH4V	TGCA	7 cut(s)	137, 635, 749, 823, 830, 891, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 746
HpyF3I	CTNAG	4 cut(s)	69, 152, 334, 620
HpySE526I	ACGT	3 cut(s)	202, 733, 934
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	494, 548, 830
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	6 cut(s)	291, 348, 355, 405, 442, 717
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	6 cut(s)	64, 148, 547, 727, 1014, 1049
MaeI	CTAG	2 cut(s)	123, 521
MaeII	ACGT	3 cut(s)	202, 733, 934
MaeIII	GTNAC	5 cut(s)	562, 625, 649, 724, 861
MalI	GATC	6 cut(s)	293, 350, 357, 407, 444, 719
MboI	GATC	6 cut(s)	291, 348, 355, 405, 442, 717
MboII	GAAGA	6 cut(s)	224, 358, 377, 809, 954, 971
MfeI	CAATTG	2 cut(s)	138, 1022
MhlI	GDGCHC	2 cut(s)	684, 825
MlyI	GAGTC	1 cut(s)	910
MmeI	TCCRAC	2 cut(s)	308, 788
MnlI	CCTC	2 cut(s)	55, 783
MseI	TTAA	3 cut(s)	87, 312, 836
MspCI	CTTAAG	1 cut(s)	86
MunI	CAATTG	2 cut(s)	138, 1022
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	143, 746
NdeII	GATC	6 cut(s)	291, 348, 355, 405, 442, 717
NlaIII	CATG	3 cut(s)	494, 548, 830
NmuCI	GTSAC	3 cut(s)	625, 649, 724
NspI	RCATGY	1 cut(s)	548
NspV	TTCGAA	1 cut(s)	1046
PciI	ACATGT	1 cut(s)	544
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	3 cut(s)	644, 671, 985
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	910
PmaCI	CACGTG	1 cut(s)	734
PmlI	CACGTG	1 cut(s)	734
PpsI	GAGTC	1 cut(s)	910
Ppu21I	YACGTR	1 cut(s)	734
PscI	ACATGT	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	684
PspCI	CACGTG	1 cut(s)	734
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	637
RsaI	GTAC	3 cut(s)	74, 469, 511
RsaNI	GTAC	3 cut(s)	73, 468, 510
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	3 cut(s)	87, 312, 836
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	6 cut(s)	291, 348, 355, 405, 442, 717
Sau96I	GGNCC	1 cut(s)	398
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	1 cut(s)	910
SduI	GDGCHC	2 cut(s)	684, 825
SfaNI	GCATC	6 cut(s)	64, 148, 547, 727, 1014, 1049
SfcI	CTRYAG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	1046
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SsiI	CCGC	1 cut(s)	146
SspI	AATATT	1 cut(s)	966
SspMI	CTAG	2 cut(s)	123, 521
SstI	GAGCTC	1 cut(s)	684
TaaI	ACNGT	1 cut(s)	573
TaiI	ACGT	3 cut(s)	205, 736, 937
TaqI	TCGA	5 cut(s)	58, 290, 379, 612, 1046
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	644, 671, 985
Tru1I	TTAA	3 cut(s)	87, 312, 836
Tru9I	TTAA	3 cut(s)	87, 312, 836
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	3 cut(s)	625, 649, 724
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	3 cut(s)	625, 649, 724
TspDTI	ATGAA	2 cut(s)	432, 479
TspRI	CASTG	1 cut(s)	358
Vha464I	CTTAAG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	4 cut(s)	314, 432, 484, 1048
XceI	RCATGY	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	948
XspI	CTAG	2 cut(s)	123, 521
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.