The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G22120 AT2G22120 |
| fragaria_vesca | FvH4_1g21840 FvH4_1g21840 |
| malus_domestica | MD01G1021800.v1.1 MD15G1330300.v1.1 |
| prunus_persica | Prupe.6G177400_v2.0.a1 |
| pyrus_communis | pycom01g04990 pycom15g29490 |
| rosa_chinensis | RchiOBHm_Chr2g0115731 |
| rosa_laevigata | RLG00000018204 |
| rosa_multiflora | Rmu_ssc0000197.1_g000058 |
| rosa_roxburghii | Rroxscaffold_2G00127920 Rroxscaffold_2G00128780 |
| rosa_rugosa | Rorug02G0199700 Rorug02G0199700 |
| rosa_samantha | Rh2AG256800 Rh2BG267400 Rh2CG262400 Rh2DG265200 |
| rosa_wichuraiana | Rw2G020100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 170 |
| Acc36I | ACCTGC | 1 cut(s) | 395 |
| Acc65I | GGTACC | 1 cut(s) | 1462 |
| AccB1I | GGYRCC | 3 cut(s) | 803, 835, 1462 |
| AciI | CCGC | 7 cut(s) | 455, 700, 760, 887, 927, 930, 1373 |
| AclWI | GGATC | 3 cut(s) | 124, 650, 965 |
| AcoI | YGGCCR | 1 cut(s) | 1226 |
| AcsI | RAATTY | 2 cut(s) | 820, 1408 |
| AcyI | GRCGYC | 2 cut(s) | 836, 1316 |
| AfaI | GTAC | 4 cut(s) | 521, 734, 1464, 1737 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 56, 62, 113, 665, 785 |
| AflII | CTTAAG | 1 cut(s) | 566 |
| AflIII | ACRYGT | 1 cut(s) | 189 |
| AgeI | ACCGGT | 1 cut(s) | 1625 |
| AgsI | TTSAA | 9 cut(s) | 133, 427, 771, 825, 895, 1029, 1582, 1662, 1746 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 190, 193 |
| AjnI | CCWGG | 3 cut(s) | 200, 501, 664 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1188, 1220 |
| Alw21I | GWGCWC | 3 cut(s) | 501, 707, 1133 |
| Alw26I | GTCTC | 5 cut(s) | 91, 92, 178, 201, 986 |
| AlwI | GGATC | 3 cut(s) | 124, 650, 965 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1527 |
| Ama87I | CYCGRG | 1 cut(s) | 95 |
| AoxI | GGCC | 9 cut(s) | 149, 224, 504, 573, 757, 787, 796, 1226, 1262 |
| ApeKI | GCWGC | 5 cut(s) | 452, 923, 1599, 1602, 1680 |
| ApoI | RAATTY | 2 cut(s) | 820, 1408 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1223, 1255 |
| AsiGI | ACCGGT | 1 cut(s) | 1625 |
| Asp718I | GGTACC | 1 cut(s) | 1462 |
| AspLEI | GCGC | 3 cut(s) | 369, 538, 838 |
| AspS9I | GGNCC | 9 cut(s) | 47, 92, 224, 464, 574, 599, 757, 1234, 1493 |
| AsuC2I | CCSGG | 2 cut(s) | 57, 108 |
| AsuHPI | GGTGA | 5 cut(s) | 1199, 1335, 1362, 1429, 1557 |
| AvaI | CYCGRG | 1 cut(s) | 95 |
| AvaII | GGWCC | 6 cut(s) | 47, 92, 464, 599, 1234, 1493 |
| AxyI | CCTNAGG | 3 cut(s) | 219, 1266, 1498 |
| BanI | GGYRCC | 3 cut(s) | 803, 835, 1462 |
| BanII | GRGCYC | 1 cut(s) | 1133 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 563, 595 |
| BauI | CACGAG | 1 cut(s) | 1386 |
| BbsI | GAAGAC | 1 cut(s) | 1608 |
| Bbv12I | GWGCWC | 3 cut(s) | 501, 707, 1133 |
| BbvCI | CCTCAGC | 2 cut(s) | 234, 1376 |
| BbvI | GCAGC | 5 cut(s) | 464, 910, 1611, 1614, 1692 |
| BccI | CCATC | 9 cut(s) | 37, 326, 553, 639, 680, 771, 1480, 1589, 1706 |
| BciT130I | CCWGG | 3 cut(s) | 202, 503, 666 |
| BclI | TGATCA | 1 cut(s) | 1177 |
| BcnI | CCSGG | 2 cut(s) | 57, 108 |
| BcoDI | GTCTC | 5 cut(s) | 91, 92, 178, 201, 986 |
| BfaI | CTAG | 6 cut(s) | 252, 396, 459, 494, 810, 1002 |
| BfmI | CTRYAG | 1 cut(s) | 717 |
| BfoI | RGCGCY | 1 cut(s) | 839 |
| BfrI | CTTAAG | 1 cut(s) | 566 |
| BfuAI | ACCTGC | 1 cut(s) | 395 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 223, 795 |
| BglII | AGATCT | 1 cut(s) | 248 |
| BlpI | GCTNAGC | 1 cut(s) | 287 |
| BmcAI | AGTACT | 1 cut(s) | 734 |
| Bme1390I | CCNGG | 5 cut(s) | 57, 108, 202, 503, 666 |
| Bme18I | GGWCC | 6 cut(s) | 47, 92, 464, 599, 1234, 1493 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 190, 193 |
| BmeT110I | CYCGRG | 1 cut(s) | 95 |
| BmgT120I | GGNCC | 9 cut(s) | 47, 92, 224, 464, 574, 599, 757, 1234, 1493 |
| BmrFI | CCNGG | 5 cut(s) | 57, 108, 202, 503, 666 |
| BmsI | GCATC | 5 cut(s) | 703, 887, 910, 937, 1014 |
| BpiI | GAAGAC | 1 cut(s) | 1608 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1369, 1401 |
| BpmI | CTGGAG | 1 cut(s) | 187 |
| Bpu10I | CCTNAGC | 3 cut(s) | 234, 1376, 1672 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 287 |
| BpuEI | CTTGAG | 1 cut(s) | 691 |
| BpuMI | CCSGG | 2 cut(s) | 57, 108 |
| Bsa29I | ATCGAT | 1 cut(s) | 1218 |
| BsaHI | GRCGYC | 2 cut(s) | 836, 1316 |
| BsaI | GGTCTC | 3 cut(s) | 92, 178, 986 |
| BsaJI | CCNNGG | 3 cut(s) | 200, 665, 799 |
| BsaWI | WCCGGW | 2 cut(s) | 841, 1625 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 661, 691 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 56, 62, 113, 665, 785 |
| Bse118I | RCCGGY | 1 cut(s) | 1625 |
| Bse1I | ACTGG | 7 cut(s) | 170, 1210, 1237, 1242, 1289, 1521, 1606 |
| Bse21I | CCTNAGG | 3 cut(s) | 219, 1266, 1498 |
| Bse3DI | GCAATG | 3 cut(s) | 212, 655, 1429 |
| BseBI | CCWGG | 3 cut(s) | 202, 503, 666 |
| BseCI | ATCGAT | 1 cut(s) | 1218 |
| BseDI | CCNNGG | 3 cut(s) | 200, 665, 799 |
| BseGI | GGATG | 9 cut(s) | 166, 545, 691, 878, 1038, 1331, 1337, 1600, 1717 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 56, 62, 113, 665, 785 |
| BseMI | GCAATG | 3 cut(s) | 212, 655, 1429 |
| BseNI | ACTGG | 7 cut(s) | 170, 1210, 1237, 1242, 1289, 1521, 1606 |
| BseRI | GAGGAG | 7 cut(s) | 219, 222, 255, 351, 900, 1318, 1750 |
| BseXI | GCAGC | 5 cut(s) | 464, 910, 1611, 1614, 1692 |
| BseYI | CCCAGC | 2 cut(s) | 882, 1590 |
| BshFI | GGCC | 9 cut(s) | 151, 226, 506, 575, 759, 789, 798, 1228, 1264 |
| BshNI | GGYRCC | 3 cut(s) | 803, 835, 1462 |
| BshTI | ACCGGT | 1 cut(s) | 1625 |
| BshVI | ATCGAT | 1 cut(s) | 1218 |
| BsiHKAI | GWGCWC | 3 cut(s) | 501, 707, 1133 |
| BsiHKCI | CYCGRG | 1 cut(s) | 95 |
| BsiSI | CCGG | 5 cut(s) | 57, 107, 645, 842, 1626 |
| BslFI | GGGAC | 2 cut(s) | 585, 1479 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 56, 62, 113, 665, 785 |
| BsmAI | GTCTC | 5 cut(s) | 91, 92, 178, 201, 986 |
| BsmBI | CGTCTC | 1 cut(s) | 201 |
| BsmFI | GGGAC | 2 cut(s) | 585, 1479 |
| BsmI | GAATGC | 3 cut(s) | 433, 532, 969 |
| BsnI | GGCC | 9 cut(s) | 151, 226, 506, 575, 759, 789, 798, 1228, 1264 |
| Bso31I | GGTCTC | 3 cut(s) | 92, 178, 986 |
| BsoBI | CYCGRG | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 3 cut(s) | 501, 707, 1133 |
| Bsp143I | GATC | 8 cut(s) | 116, 143, 248, 510, 655, 970, 1177, 1444 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 287 |
| Bsp19I | CCATGG | 1 cut(s) | 799 |
| BspACI | CCGC | 7 cut(s) | 455, 700, 760, 887, 927, 930, 1373 |
| BspANI | GGCC | 9 cut(s) | 151, 226, 506, 575, 759, 789, 798, 1228, 1264 |
| BspDI | ATCGAT | 1 cut(s) | 1218 |
| BspMI | ACCTGC | 1 cut(s) | 395 |
| BspPI | GGATC | 3 cut(s) | 124, 650, 965 |
| BspT107I | GGYRCC | 3 cut(s) | 803, 835, 1462 |
| BspTI | CTTAAG | 1 cut(s) | 566 |
| BspTNI | GGTCTC | 3 cut(s) | 92, 178, 986 |
| BsrDI | GCAATG | 3 cut(s) | 212, 655, 1429 |
| BsrFI | RCCGGY | 1 cut(s) | 1625 |
| BsrI | ACTGG | 7 cut(s) | 170, 1210, 1237, 1242, 1289, 1521, 1606 |
| BssAI | RCCGGY | 1 cut(s) | 1625 |
| BssECI | CCNNGG | 3 cut(s) | 200, 665, 799 |
| BssMI | GATC | 8 cut(s) | 116, 143, 248, 510, 655, 970, 1177, 1444 |
| BssNI | GRCGYC | 2 cut(s) | 836, 1316 |
| BssSI | CACGAG | 1 cut(s) | 1386 |
| BssT1I | CCWWGG | 1 cut(s) | 799 |
| Bst2BI | CACGAG | 1 cut(s) | 1386 |
| Bst2UI | CCWGG | 3 cut(s) | 202, 503, 666 |
| Bst4CI | ACNGT | 3 cut(s) | 483, 737, 1667 |
| Bst6I | CTCTTC | 2 cut(s) | 388, 1697 |
| BstACI | GRCGYC | 2 cut(s) | 836, 1316 |
| BstAFI | CTTAAG | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 4 cut(s) | 343, 371, 1720, 1756 |
| BstDSI | CCRYGG | 1 cut(s) | 799 |
| BstEII | GGTNACC | 1 cut(s) | 844 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 783 |
| BstF5I | GGATG | 9 cut(s) | 166, 545, 691, 878, 1038, 1331, 1337, 1600, 1717 |
| BstH2I | RGCGCY | 1 cut(s) | 839 |
| BstHHI | GCGC | 3 cut(s) | 369, 538, 838 |
| BstKTI | GATC | 8 cut(s) | 119, 146, 251, 513, 658, 973, 1180, 1447 |
| BstMAI | GTCTC | 5 cut(s) | 91, 92, 178, 201, 986 |
| BstMBI | GATC | 8 cut(s) | 116, 143, 248, 510, 655, 970, 1177, 1444 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 223, 401, 795, 923, 929, 1596, 1677 |
| BstNI | CCWGG | 3 cut(s) | 202, 503, 666 |
| BstNSI | RCATGY | 3 cut(s) | 193, 373, 439 |
| BstPI | GGTNACC | 1 cut(s) | 844 |
| BstSCI | CCNGG | 5 cut(s) | 55, 106, 200, 501, 664 |
| BstSFI | CTRYAG | 1 cut(s) | 717 |
| BstV1I | GCAGC | 5 cut(s) | 464, 910, 1611, 1614, 1692 |
| BstV2I | GAAGAC | 1 cut(s) | 1608 |
| BstX2I | RGATCY | 3 cut(s) | 116, 248, 970 |
| BstYI | RGATCY | 3 cut(s) | 116, 248, 970 |
| Bsu15I | ATCGAT | 1 cut(s) | 1218 |
| Bsu36I | CCTNAGG | 3 cut(s) | 219, 1266, 1498 |
| BsuRI | GGCC | 9 cut(s) | 151, 226, 506, 575, 759, 789, 798, 1228, 1264 |
| BsuTUI | ATCGAT | 1 cut(s) | 1218 |
| BtgI | CCRYGG | 1 cut(s) | 799 |
| BtsCI | GGATG | 9 cut(s) | 166, 545, 691, 878, 1038, 1331, 1337, 1600, 1717 |
| BtsIMutI | CAGTG | 3 cut(s) | 488, 877, 1173 |
| BveI | ACCTGC | 1 cut(s) | 395 |
| Cac8I | GCNNGC | 4 cut(s) | 343, 371, 1720, 1756 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1527 |
| CfoI | GCGC | 3 cut(s) | 369, 538, 838 |
| Cfr10I | RCCGGY | 1 cut(s) | 1625 |
| Cfr13I | GGNCC | 9 cut(s) | 47, 92, 224, 464, 574, 599, 757, 1234, 1493 |
| ClaI | ATCGAT | 1 cut(s) | 1218 |
| CseI | GACGC | 1 cut(s) | 1305 |
| Csp6I | GTAC | 4 cut(s) | 520, 733, 1463, 1736 |
| CspAI | ACCGGT | 1 cut(s) | 1625 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 813, 848 |
| CviQI | GTAC | 4 cut(s) | 520, 733, 1463, 1736 |
| DinI | GGCGCC | 1 cut(s) | 837 |
| DpnI | GATC | 8 cut(s) | 118, 145, 250, 512, 657, 972, 1179, 1446 |
| DpnII | GATC | 8 cut(s) | 116, 143, 248, 510, 655, 970, 1177, 1444 |
| DraI | TTTAAA | 1 cut(s) | 1275 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 170 |
| DriI | GACNNNNNGTC | 2 cut(s) | 190, 193 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 170 |
| EaeI | YGGCCR | 1 cut(s) | 1226 |
| Eam1104I | CTCTTC | 2 cut(s) | 388, 1697 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 190, 193 |
| EarI | CTCTTC | 2 cut(s) | 388, 1697 |
| Ecl136II | GAGCTC | 1 cut(s) | 1131 |
| Eco130I | CCWWGG | 1 cut(s) | 799 |
| Eco147I | AGGCCT | 1 cut(s) | 506 |
| Eco24I | GRGCYC | 1 cut(s) | 1133 |
| Eco31I | GGTCTC | 3 cut(s) | 92, 178, 986 |
| Eco47I | GGWCC | 6 cut(s) | 47, 92, 464, 599, 1234, 1493 |
| Eco53kI | GAGCTC | 1 cut(s) | 1131 |
| Eco81I | CCTNAGG | 3 cut(s) | 219, 1266, 1498 |
| Eco88I | CYCGRG | 1 cut(s) | 95 |
| Eco91I | GGTNACC | 1 cut(s) | 844 |
| EcoICRI | GAGCTC | 1 cut(s) | 1131 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 783 |
| EcoO109I | RGGNCCY | 5 cut(s) | 47, 92, 224, 574, 1493 |
| EcoO65I | GGTNACC | 1 cut(s) | 844 |
| EcoRII | CCWGG | 3 cut(s) | 200, 501, 664 |
| EcoT14I | CCWWGG | 1 cut(s) | 799 |
| EcoT22I | ATGCAT | 1 cut(s) | 441 |
| EcoT38I | GRGCYC | 1 cut(s) | 1133 |
| EgeI | GGCGCC | 1 cut(s) | 837 |
| EheI | GGCGCC | 1 cut(s) | 837 |
| ErhI | CCWWGG | 1 cut(s) | 799 |
| Esp3I | CGTCTC | 1 cut(s) | 201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1344, 1376 |
| FaqI | GGGAC | 2 cut(s) | 585, 1479 |
| FauNDI | CATATG | 1 cut(s) | 586 |
| FbaI | TGATCA | 1 cut(s) | 1177 |
| FokI | GGATG | 9 cut(s) | 173, 532, 698, 865, 1025, 1318, 1324, 1607, 1724 |
| FriOI | GRGCYC | 1 cut(s) | 1133 |
| FspBI | CTAG | 6 cut(s) | 252, 396, 459, 494, 810, 1002 |
| GlaI | GCGC | 3 cut(s) | 368, 537, 837 |
| GsaI | CCCAGC | 2 cut(s) | 886, 1594 |
| GsuI | CTGGAG | 1 cut(s) | 187 |
| HaeII | RGCGCY | 1 cut(s) | 839 |
| HaeIII | GGCC | 9 cut(s) | 151, 226, 506, 575, 759, 789, 798, 1228, 1264 |
| HapII | CCGG | 5 cut(s) | 57, 107, 645, 842, 1626 |
| HgaI | GACGC | 1 cut(s) | 1305 |
| HhaI | GCGC | 3 cut(s) | 369, 538, 838 |
| Hin1I | GRCGYC | 2 cut(s) | 836, 1316 |
| Hin6I | GCGC | 3 cut(s) | 367, 536, 836 |
| HinP1I | GCGC | 3 cut(s) | 367, 536, 836 |
| HincII | GTYRAC | 1 cut(s) | 1644 |
| HindII | GTYRAC | 1 cut(s) | 1644 |
| HindIII | AAGCTT | 3 cut(s) | 421, 898, 1358 |
| HinfI | GANTC | 6 cut(s) | 1016, 1103, 1288, 1365, 1613, 1705 |
| HpaII | CCGG | 5 cut(s) | 57, 107, 645, 842, 1626 |
| HphI | GGTGA | 5 cut(s) | 1199, 1335, 1362, 1429, 1557 |
| Hpy166II | GTNNAC | 3 cut(s) | 1534, 1644, 1655 |
| Hpy188I | TCNGA | 7 cut(s) | 310, 324, 349, 1081, 1282, 1321, 1512 |
| Hpy8I | GTNNAC | 3 cut(s) | 1534, 1644, 1655 |
| Hpy99I | CGWCG | 4 cut(s) | 188, 681, 868, 1321 |
| HpyAV | CCTTC | 7 cut(s) | 56, 486, 565, 779, 1128, 1225, 1580 |
| HpyCH4III | ACNGT | 3 cut(s) | 483, 737, 1667 |
| HpyCH4IV | ACGT | 1 cut(s) | 863 |
| HpyCH4V | TGCA | 9 cut(s) | 356, 404, 431, 439, 452, 530, 878, 967, 1636 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 223, 401, 795, 923, 929, 1596, 1677 |
| HpySE526I | ACGT | 1 cut(s) | 863 |
| Hsp92I | GRCGYC | 2 cut(s) | 836, 1316 |
| HspAI | GCGC | 3 cut(s) | 367, 536, 836 |
| KasI | GGCGCC | 1 cut(s) | 835 |
| KflI | GGGWCCC | 1 cut(s) | 1493 |
| KpnI | GGTACC | 1 cut(s) | 1466 |
| Ksp22I | TGATCA | 1 cut(s) | 1177 |
| Kzo9I | GATC | 8 cut(s) | 116, 143, 248, 510, 655, 970, 1177, 1444 |
| LmnI | GCTCC | 8 cut(s) | 65, 243, 268, 338, 904, 1128, 1677, 1763 |
| Lsp1109I | GCAGC | 5 cut(s) | 464, 910, 1611, 1614, 1692 |
| LweI | GCATC | 5 cut(s) | 703, 887, 910, 937, 1014 |
| MaeI | CTAG | 6 cut(s) | 252, 396, 459, 494, 810, 1002 |
| MaeII | ACGT | 1 cut(s) | 863 |
| MaeIII | GTNAC | 3 cut(s) | 313, 844, 1255 |
| MalI | GATC | 8 cut(s) | 118, 145, 250, 512, 657, 972, 1179, 1446 |
| MboI | GATC | 8 cut(s) | 116, 143, 248, 510, 655, 970, 1177, 1444 |
| MboII | GAAGA | 6 cut(s) | 375, 703, 930, 1076, 1608, 1714 |
| MflI | RGATCY | 3 cut(s) | 116, 248, 970 |
| MhlI | GDGCHC | 3 cut(s) | 501, 707, 1133 |
| MluCI | AATT | 6 cut(s) | 550, 820, 934, 1067, 1408, 1456 |
| Mly113I | GGCGCC | 1 cut(s) | 836 |
| MlyI | GAGTC | 4 cut(s) | 1282, 1359, 1622, 1714 |
| MmeI | TCCRAC | 1 cut(s) | 1299 |
| Mph1103I | ATGCAT | 1 cut(s) | 441 |
| MseI | TTAA | 6 cut(s) | 567, 750, 1035, 1274, 1572, 1777 |
| MslI | CAYNNNNRTG | 1 cut(s) | 81 |
| MspA1I | CMGCKG | 2 cut(s) | 455, 1375 |
| MspCI | CTTAAG | 1 cut(s) | 566 |
| MspI | CCGG | 5 cut(s) | 57, 107, 645, 842, 1626 |
| MspR9I | CCNGG | 5 cut(s) | 57, 108, 202, 503, 666 |
| Mva1269I | GAATGC | 3 cut(s) | 433, 532, 969 |
| MvaI | CCWGG | 3 cut(s) | 202, 503, 666 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 223, 401, 795, 923, 929, 1596, 1677 |
| NarI | GGCGCC | 1 cut(s) | 836 |
| NciI | CCSGG | 2 cut(s) | 57, 108 |
| NcoI | CCATGG | 1 cut(s) | 799 |
| NdeI | CATATG | 1 cut(s) | 586 |
| NdeII | GATC | 8 cut(s) | 116, 143, 248, 510, 655, 970, 1177, 1444 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| NsiI | ATGCAT | 1 cut(s) | 441 |
| NspI | RCATGY | 3 cut(s) | 193, 373, 439 |
| PaeI | GCATGC | 1 cut(s) | 373 |
| PceI | AGGCCT | 1 cut(s) | 506 |
| PciI | ACATGT | 1 cut(s) | 189 |
| PctI | GAATGC | 3 cut(s) | 433, 532, 969 |
| PfeI | GAWTC | 2 cut(s) | 1016, 1103 |
| PinAI | ACCGGT | 1 cut(s) | 1625 |
| PleI | GAGTC | 4 cut(s) | 1282, 1359, 1621, 1713 |
| PluTI | GGCGCC | 1 cut(s) | 839 |
| PpsI | GAGTC | 4 cut(s) | 1282, 1359, 1621, 1713 |
| PpuMI | RGGWCCY | 3 cut(s) | 47, 92, 1493 |
| PscI | ACATGT | 1 cut(s) | 189 |
| Psp124BI | GAGCTC | 1 cut(s) | 1133 |
| Psp5II | RGGWCCY | 3 cut(s) | 47, 92, 1493 |
| Psp6I | CCWGG | 3 cut(s) | 200, 501, 664 |
| PspEI | GGTNACC | 1 cut(s) | 844 |
| PspFI | CCCAGC | 2 cut(s) | 882, 1590 |
| PspGI | CCWGG | 3 cut(s) | 200, 501, 664 |
| PspPI | GGNCC | 9 cut(s) | 47, 92, 224, 464, 574, 599, 757, 1234, 1493 |
| PspPPI | RGGWCCY | 3 cut(s) | 47, 92, 1493 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1527 |
| PsuI | RGATCY | 3 cut(s) | 116, 248, 970 |
| RsaI | GTAC | 4 cut(s) | 521, 734, 1464, 1737 |
| RsaNI | GTAC | 4 cut(s) | 520, 733, 1463, 1736 |
| RseI | CAYNNNNRTG | 1 cut(s) | 81 |
| SacI | GAGCTC | 1 cut(s) | 1133 |
| SaqAI | TTAA | 6 cut(s) | 567, 750, 1035, 1274, 1572, 1777 |
| Sau3AI | GATC | 8 cut(s) | 116, 143, 248, 510, 655, 970, 1177, 1444 |
| Sau96I | GGNCC | 9 cut(s) | 47, 92, 224, 464, 574, 599, 757, 1234, 1493 |
| ScaI | AGTACT | 1 cut(s) | 734 |
| SchI | GAGTC | 4 cut(s) | 1282, 1359, 1622, 1714 |
| ScrFI | CCNGG | 5 cut(s) | 57, 108, 202, 503, 666 |
| SduI | GDGCHC | 3 cut(s) | 501, 707, 1133 |
| SfaNI | GCATC | 5 cut(s) | 703, 887, 910, 937, 1014 |
| SfcI | CTRYAG | 1 cut(s) | 717 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 795 |
| SfoI | GGCGCC | 1 cut(s) | 837 |
| SinI | GGWCC | 6 cut(s) | 47, 92, 464, 599, 1234, 1493 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 81 |
| SmlI | CTYRAG | 2 cut(s) | 566, 706 |
| SmoI | CTYRAG | 2 cut(s) | 566, 706 |
| SphI | GCATGC | 1 cut(s) | 373 |
| Sse9I | AATT | 6 cut(s) | 550, 820, 934, 1067, 1408, 1456 |
| SseBI | AGGCCT | 1 cut(s) | 506 |
| SsiI | CCGC | 7 cut(s) | 455, 700, 760, 887, 927, 930, 1373 |
| SspDI | GGCGCC | 1 cut(s) | 835 |
| SspMI | CTAG | 6 cut(s) | 252, 396, 459, 494, 810, 1002 |
| SstI | GAGCTC | 1 cut(s) | 1133 |
| StuI | AGGCCT | 1 cut(s) | 506 |
| StyD4I | CCNGG | 5 cut(s) | 55, 106, 200, 501, 664 |
| StyI | CCWWGG | 1 cut(s) | 799 |
| TaaI | ACNGT | 3 cut(s) | 483, 737, 1667 |
| TaiI | ACGT | 1 cut(s) | 866 |
| TaqI | TCGA | 4 cut(s) | 679, 1218, 1395, 1484 |
| TaqII | GACCGA | 1 cut(s) | 856 |
| TasI | AATT | 6 cut(s) | 550, 820, 934, 1067, 1408, 1456 |
| TatI | WGTACW | 2 cut(s) | 732, 1735 |
| TauI | GCSGC | 5 cut(s) | 458, 762, 889, 929, 932 |
| TfiI | GAWTC | 2 cut(s) | 1016, 1103 |
| Tru1I | TTAA | 6 cut(s) | 567, 750, 1035, 1274, 1572, 1777 |
| Tru9I | TTAA | 6 cut(s) | 567, 750, 1035, 1274, 1572, 1777 |
| TscAI | CASTG | 3 cut(s) | 488, 877, 1180 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 5 cut(s) | 452, 923, 1599, 1602, 1680 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 1 cut(s) | 1204 |
| TspGWI | ACGGA | 2 cut(s) | 698, 976 |
| TspRI | CASTG | 3 cut(s) | 488, 877, 1180 |
| Vha464I | CTTAAG | 1 cut(s) | 566 |
| VpaK11BI | GGWCC | 6 cut(s) | 47, 92, 464, 599, 1234, 1493 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 783 |
| XapI | RAATTY | 2 cut(s) | 820, 1408 |
| XceI | RCATGY | 3 cut(s) | 193, 373, 439 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 797 |
| XspI | CTAG | 6 cut(s) | 252, 396, 459, 494, 810, 1002 |
| ZrmI | AGTACT | 1 cut(s) | 734 |
| Zsp2I | ATGCAT | 1 cut(s) | 441 |