Rorug02G0246600

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF- 2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon- dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
25643187 .. 25647642
4456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0246600.1

Sequence Viewer

Length: 930 bp
ATGCTGCCGTTCCTCTTCTCTGTCCCCTCTTCTTTTCGTCTCTGTTTCTCTTCCCCCTCCTGCAACTTGCCCAACACCAGGGATCTGCTTCATGGTTACAATAGAGAAGAAACCCTGATTCTCAAATTGATTAACTACAGAAGCAAATGGAAGAAGAAGAAGATGCAGATTGCGGAGGGAGGAAAAGATAAGGGAAAGAAAAAACAACAAAACAATGGCAGCCGGGTCAGCCGGTTAACATCCTCAACCATTAGATTAAAGAGTATATATCTGACGGTCCATAACATGCTGACGTGCCCAAGCATGGTATACTCGGAGCAGGGAAGAATTTTCGTATATAAAGATGTTAAAGGAGTTCCAATGGTCCCATCTTGCTCAACTGCTTTCCAAATACGTGGGGAGCTGTTAAAGCCAGGGCAGTTTGACGGGCCAAGGTTTCTCCTAAGGTTATGTGCTTCGAAAGCTTGCCATGATAGTTTCCCCACTAGTTTGAAGCTCACAGAGAAAGGAGTTCAGTGTTCAATTTTTCTCAGGCATGACTCAAGTGGCCCTCGATCTACGATAGCGTCAATTGTGATAGATATCAGAGAAGAGGCGATTCATCATTCATTCAACATCACCCTACTAGTTCTACAACCAACCCAAGTGGCTGACCCGAAGGCCCAAACCAGCAAGGCCTGCCCAGCAGAGCAGATGCAACCATCAGAGCCAGAAGCTCAGGCCCAAGATGCATCGGCCAAGCCGCTGACTATGCCAGCAGTTAAATGGGCCGAGCAAGGAGCTCGAAGGCCCAATTCAAGCCCAGCAGGCCCACTATCTCTATGGTCTTTCGCGAGTTATCAAGTGGTCGAGCCCAGTCCACCTTCTAGACCACATCAAATAAAAGGCAAAAATGACTTTGCTATCTGTGAGATTCGAACCCAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

309

Amino Acids

34.38

Weight (kDa)

9.67

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010315)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 309
AccII CGCG 1 cut(s) 833
AciI CCGC 2 cut(s) 173, 743
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 78, 304
AgsI TTSAA 4 cut(s) 493, 522, 613, 798
AhlI ACTAGT 2 cut(s) 485, 625
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 3 cut(s) 77, 412, 921
AluBI AGCT 5 cut(s) 403, 464, 496, 716, 782
AluI AGCT 5 cut(s) 403, 464, 496, 716, 782
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 90
AoxI GGCC 9 cut(s) 428, 547, 660, 675, 720, 735, 768, 788, 808
ApeKI GCWGC 2 cut(s) 4, 219
ApoI RAATTY 1 cut(s) 327
AspS9I GGNCC 9 cut(s) 277, 364, 428, 548, 661, 721, 768, 789, 809
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 610
AsuII TTCGAA 2 cut(s) 458, 916
AvaII GGWCC 2 cut(s) 277, 364
AxyI CCTNAGG 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 784, 855
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 1 cut(s) 231
BccI CCATC 2 cut(s) 376, 709
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 3 cut(s) 79, 414, 923
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 44
BcuI ACTAGT 2 cut(s) 485, 625
BfaI CTAG 3 cut(s) 486, 626, 867
BfmI CTRYAG 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 807
BisI GCNGC 3 cut(s) 5, 220, 743
BlsI GCNGC 3 cut(s) 6, 221, 744
Bme1390I CCNGG 4 cut(s) 79, 224, 414, 923
Bme18I GGWCC 2 cut(s) 277, 364
BmgBI CACGTC 1 cut(s) 294
BmgT120I GGNCC 9 cut(s) 277, 364, 428, 548, 661, 721, 768, 789, 809
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 4 cut(s) 79, 224, 414, 923
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 4 cut(s) 153, 684, 718, 740
BmuI ACTGGG 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 2 cut(s) 458, 916
BpuEI CTTGAG 1 cut(s) 526
BpuMI CCSGG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 581
BsaJI CCNNGG 4 cut(s) 78, 413, 431, 921
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 304
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 855
Bse21I CCTNAGG 1 cut(s) 443
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 3 cut(s) 79, 414, 923
BseDI CCNNGG 4 cut(s) 78, 413, 431, 921
BseGI GGATG 1 cut(s) 239
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 2 cut(s) 78, 304
BseMII CTCAG 2 cut(s) 544, 731
BseNI ACTGG 1 cut(s) 855
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 2 cut(s) 682, 802
Bsh1236I CGCG 1 cut(s) 833
BshFI GGCC 9 cut(s) 430, 549, 662, 677, 722, 737, 770, 790, 810
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 2 cut(s) 223, 232
BslFI GGGAC 2 cut(s) 8, 350
BslI CCNNNNNNNGG 2 cut(s) 78, 304
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 8, 350
BsnI GGCC 9 cut(s) 430, 549, 662, 677, 722, 737, 770, 790, 810
Bsp119I TTCGAA 2 cut(s) 458, 916
Bsp1286I GDGCHC 3 cut(s) 299, 784, 855
Bsp143I GATC 2 cut(s) 82, 554
Bsp68I TCGCGA 1 cut(s) 833
BspACI CCGC 2 cut(s) 173, 743
BspANI GGCC 9 cut(s) 430, 549, 662, 677, 722, 737, 770, 790, 810
BspCNI CTCAG 2 cut(s) 543, 730
BspFNI CGCG 1 cut(s) 833
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 2 cut(s) 458, 916
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 1 cut(s) 855
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 4 cut(s) 78, 413, 431, 921
BssMI GATC 2 cut(s) 82, 554
BssNAI GTATAC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 431
Bst1107I GTATAC 1 cut(s) 310
Bst2UI CCWGG 3 cut(s) 79, 414, 923
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 4 cut(s) 20, 34, 55, 585
BstAPI GCANNNNNTGC 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 395
BstBI TTCGAA 2 cut(s) 458, 916
BstC8I GCNNGC 4 cut(s) 466, 679, 756, 808
BstDEI CTNAG 3 cut(s) 443, 530, 717
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 833
BstKTI GATC 2 cut(s) 85, 557
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 82, 554
BstMWI GCNNNNNNNGC 8 cut(s) 228, 409, 461, 678, 683, 728, 751, 807
BstNI CCWGG 3 cut(s) 79, 414, 923
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 4 cut(s) 77, 222, 412, 921
BstSFI CTRYAG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 1 cut(s) 833
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 395
BstYI RGATCY 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 443
BsuRI GGCC 9 cut(s) 430, 549, 662, 677, 722, 737, 770, 790, 810
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 521
BtuMI TCGCGA 1 cut(s) 833
Cac8I GCNNGC 4 cut(s) 466, 679, 756, 808
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 9 cut(s) 277, 364, 428, 548, 661, 721, 768, 789, 809
CseI GACGC 1 cut(s) 555
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviAII CATG 5 cut(s) 92, 286, 304, 470, 536
DdeI CTNAG 3 cut(s) 443, 530, 717
DpnI GATC 2 cut(s) 84, 556
DpnII GATC 2 cut(s) 82, 554
EaeI YGGCCR 1 cut(s) 735
Eam1104I CTCTTC 4 cut(s) 20, 34, 55, 585
EarI CTCTTC 4 cut(s) 20, 34, 55, 585
Ecl136II GAGCTC 1 cut(s) 782
Eco130I CCWWGG 1 cut(s) 431
Eco147I AGGCCT 1 cut(s) 677
Eco24I GRGCYC 2 cut(s) 784, 855
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 277, 364
Eco53kI GAGCTC 1 cut(s) 782
Eco81I CCTNAGG 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 782
EcoRII CCWGG 3 cut(s) 77, 412, 921
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 2 cut(s) 784, 855
ErhI CCWWGG 1 cut(s) 431
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 5 cut(s) 95, 289, 307, 473, 539
FaqI GGGAC 2 cut(s) 8, 350
FatI CATG 5 cut(s) 91, 285, 303, 469, 535
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 5, 220, 743
FokI GGATG 1 cut(s) 226
FriOI GRGCYC 2 cut(s) 784, 855
Fsp4HI GCNGC 3 cut(s) 5, 220, 743
FspBI CTAG 3 cut(s) 486, 626, 867
GluI GCNGC 3 cut(s) 5, 220, 743
GsaI CCCAGC 2 cut(s) 686, 806
HaeIII GGCC 9 cut(s) 430, 549, 662, 677, 722, 737, 770, 790, 810
HapII CCGG 2 cut(s) 223, 232
HgaI GACGC 1 cut(s) 555
Hin1II CATG 5 cut(s) 95, 289, 307, 473, 539
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 4 cut(s) 118, 539, 598, 913
HpaI GTTAAC 1 cut(s) 237
HpaII CCGG 2 cut(s) 223, 232
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 3 cut(s) 237, 310, 860
Hpy188I TCNGA 4 cut(s) 273, 316, 587, 706
Hpy188III TCNNGA 2 cut(s) 832, 867
Hpy8I GTNNAC 3 cut(s) 237, 310, 860
HpyAV CCTTC 3 cut(s) 652, 780, 873
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 2 cut(s) 293, 394
HpyCH4V TGCA 4 cut(s) 63, 166, 697, 731
HpyF10VI GCNNNNNNNGC 8 cut(s) 228, 409, 461, 678, 683, 728, 751, 807
HpyF3I CTNAG 3 cut(s) 443, 530, 717
HpySE526I ACGT 2 cut(s) 293, 394
Hsp92II CATG 5 cut(s) 95, 289, 307, 473, 539
KspAI GTTAAC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 82, 554
LmnI GCTCC 3 cut(s) 316, 400, 779
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 4 cut(s) 153, 684, 718, 740
MaeI CTAG 3 cut(s) 486, 626, 867
MaeII ACGT 2 cut(s) 293, 394
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 84, 556
MboI GATC 2 cut(s) 82, 554
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 299, 784, 855
MluCI AATT 5 cut(s) 125, 327, 522, 570, 793
MlyI GAGTC 1 cut(s) 533
MnlI CCTC 8 cut(s) 23, 37, 67, 169, 173, 253, 561, 586
Mph1103I ATGCAT 1 cut(s) 733
MseI TTAA 6 cut(s) 132, 236, 257, 348, 407, 762
MspA1I CMGCKG 1 cut(s) 745
MspI CCGG 2 cut(s) 223, 232
MspR9I CCNGG 4 cut(s) 79, 224, 414, 923
MunI CAATTG 1 cut(s) 570
MvaI CCWGG 3 cut(s) 79, 414, 923
MvnI CGCG 1 cut(s) 833
MwoI GCNNNNNNNGC 8 cut(s) 228, 409, 461, 678, 683, 728, 751, 807
NciI CCSGG 1 cut(s) 224
NdeII GATC 2 cut(s) 82, 554
NlaIII CATG 5 cut(s) 95, 289, 307, 473, 539
NlaIV GGNNCC 1 cut(s) 366
NmeAIII GCCGAG 1 cut(s) 796
NruI TCGCGA 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 1 cut(s) 289
NspV TTCGAA 2 cut(s) 458, 916
PceI AGGCCT 1 cut(s) 677
PfeI GAWTC 3 cut(s) 118, 598, 913
PkrI GCNGC 3 cut(s) 6, 221, 744
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 784
Psp6I CCWGG 3 cut(s) 77, 412, 921
PspFI CCCAGC 2 cut(s) 682, 802
PspGI CCWGG 3 cut(s) 77, 412, 921
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 9 cut(s) 277, 364, 428, 548, 661, 721, 768, 789, 809
PsuI RGATCY 1 cut(s) 82
RruI TCGCGA 1 cut(s) 833
SacI GAGCTC 1 cut(s) 784
SaqAI TTAA 6 cut(s) 132, 236, 257, 348, 407, 762
SatI GCNGC 3 cut(s) 5, 220, 743
Sau3AI GATC 2 cut(s) 82, 554
Sau96I GGNCC 9 cut(s) 277, 364, 428, 548, 661, 721, 768, 789, 809
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 4 cut(s) 79, 224, 414, 923
SduI GDGCHC 3 cut(s) 299, 784, 855
SfaNI GCATC 4 cut(s) 153, 684, 718, 740
SfcI CTRYAG 1 cut(s) 136
SfuI TTCGAA 2 cut(s) 458, 916
SinI GGWCC 2 cut(s) 277, 364
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
SpeI ACTAGT 2 cut(s) 485, 625
Sse9I AATT 5 cut(s) 125, 327, 522, 570, 793
SseBI AGGCCT 1 cut(s) 677
SsiI CCGC 2 cut(s) 173, 743
SspMI CTAG 3 cut(s) 486, 626, 867
SstI GAGCTC 1 cut(s) 784
StuI AGGCCT 1 cut(s) 677
StyD4I CCNGG 4 cut(s) 77, 222, 412, 921
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 2 cut(s) 296, 397
TaqI TCGA 5 cut(s) 458, 553, 784, 849, 916
TasI AATT 5 cut(s) 125, 327, 522, 570, 793
TauI GCSGC 1 cut(s) 745
TfiI GAWTC 3 cut(s) 118, 598, 913
Tru1I TTAA 6 cut(s) 132, 236, 257, 348, 407, 762
Tru9I TTAA 6 cut(s) 132, 236, 257, 348, 407, 762
TscAI CASTG 1 cut(s) 521
TseI GCWGC 2 cut(s) 4, 219
TspDTI ATGAA 3 cut(s) 80, 590, 597
TspRI CASTG 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 277, 364
XapI RAATTY 1 cut(s) 327
XbaI TCTAGA 1 cut(s) 866
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 2 cut(s) 762, 819
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 3 cut(s) 486, 626, 867
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.