Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010155

Physical Location & Seq

Genomic Coordinates Reverse (-)

45527558 .. 45529688

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0359700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGGCGGCAACTGCAGCAGCAGCTTCTGGAGCCCCCGAGCTCCTCCTCCGGTACAGGCACTCCTCCTCTTCCGGGCCTGCAGACAACTTCATGGGCTCCAGAACAGTTGCCATCCACATCCCATTTTACTTCTCTTCCACGAGGGCCAAAGGGTCTTTCCCCATCCTAGCTCTTGACCCTCGCAGACAACAAGAAGAAGAAAAAGAAGAGAATTCAAGCATCGTTAACAACACCACCGGTTTCAACTCTCAGAACGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCTATTGTGGGTGGAGCTGGAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCCCTTATCATGATATTTACTCCTGTCATTATAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

146

Amino Acids

15.71

Weight (kDa)

8.05

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02010
malus_domestica	MD09G1003500.v1.1
prunus_persica	Prupe.3G313000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139751
rosa_laevigata	RLG00000019830
rosa_multiflora	Rmu_co8047706.1_g000001 Rmu_sc0009714.1_g000012
rosa_roxburghii	Rroxscaffold_2G00105230
rosa_rugosa	Rorug02G0359700 Rorug02G0359800 Rorug02G0359900 Rorug04G0363900
rosa_samantha	Rh2AG409400 Rh2AG409500 Rh2BG419800 Rh2BG419900 Rh2CG395700 Rh2CG395800 Rh2DG429300 Rh4CG451800
rosa_wichuraiana	Rw2G033420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	219, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	6 cut(s)	26, 43, 173, 287, 308, 401
AluI	AGCT	6 cut(s)	26, 43, 173, 287, 308, 401
Alw21I	GWGCWC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	3 cut(s)	77, 147, 366
ApeKI	GCWGC	4 cut(s)	17, 20, 23, 324
ApoI	RAATTY	1 cut(s)	214
AsiGI	ACCGGT	1 cut(s)	239
AspS9I	GGNCC	3 cut(s)	77, 147, 367
AsuC2I	CCSGG	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	38
BanII	GRGCYC	3 cut(s)	37, 45, 101
BauI	CACGAG	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	29, 32, 35, 336
BccI	CCATC	2 cut(s)	122, 173
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	2 cut(s)	170, 284
BfmI	CTRYAG	2 cut(s)	15, 81
BisI	GCNGC	5 cut(s)	9, 18, 21, 24, 325
BlsI	GCNGC	5 cut(s)	10, 19, 22, 25, 326
Bme1390I	CCNGG	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	77, 147, 367
BmiI	GGNNCC	2 cut(s)	34, 100
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	231
BmtI	GCTAGC	1 cut(s)	287
BpmI	CTGGAG	2 cut(s)	51, 85
BpuMI	CCSGG	1 cut(s)	76
BsaWI	WCCGGW	2 cut(s)	51, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	114, 120, 165
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	266, 330
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	4 cut(s)	35, 38, 55, 58
BseXI	GCAGC	4 cut(s)	29, 32, 35, 336
BshFI	GGCC	3 cut(s)	79, 149, 368
BshTI	ACCGGT	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	52, 75, 240
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	3 cut(s)	79, 149, 368
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	37, 45, 101
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	3 cut(s)	79, 149, 368
BspCNI	CTCAG	2 cut(s)	265, 331
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	34, 100
BspMAI	CTGCAG	2 cut(s)	19, 85
BspOI	GCTAGC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	239
BssMI	GATC	1 cut(s)	414
BssSI	CACGAG	1 cut(s)	142
Bst2BI	CACGAG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	76, 142, 204
BstC8I	GCNNGC	2 cut(s)	81, 285
BstDEI	CTNAG	2 cut(s)	252, 339
BstF5I	GGATG	3 cut(s)	114, 120, 165
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	2 cut(s)	15, 81
BstV1I	GCAGC	4 cut(s)	29, 32, 35, 336
BsuRI	GGCC	3 cut(s)	79, 149, 368
BtsCI	GGATG	3 cut(s)	114, 120, 165
Cac8I	GCNNGC	2 cut(s)	81, 285
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	77, 147, 367
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	2 cut(s)	94, 376
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	252, 339
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	3 cut(s)	76, 142, 204
EarI	CTCTTC	3 cut(s)	76, 142, 204
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	3 cut(s)	37, 45, 101
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	214
EcoT38I	GRGCYC	3 cut(s)	37, 45, 101
FaeI	CATG	2 cut(s)	97, 379
FaiI	YATR	6 cut(s)	95, 321, 329, 362, 377, 398
FatI	CATG	2 cut(s)	93, 375
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	5 cut(s)	9, 18, 21, 24, 325
FokI	GGATG	3 cut(s)	101, 107, 152
FriOI	GRGCYC	3 cut(s)	37, 45, 101
Fsp4HI	GCNGC	5 cut(s)	9, 18, 21, 24, 325
FspBI	CTAG	2 cut(s)	170, 284
GluI	GCNGC	5 cut(s)	9, 18, 21, 24, 325
GsuI	CTGGAG	2 cut(s)	51, 85
HaeIII	GGCC	3 cut(s)	79, 149, 368
HapII	CCGG	3 cut(s)	52, 75, 240
Hin1II	CATG	2 cut(s)	97, 379
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	52, 75, 240
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	255, 414
Hpy188III	TCNNGA	5 cut(s)	30, 102, 176, 338, 376
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	17, 83, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
HpyF3I	CTNAG	2 cut(s)	252, 339
Hsp92II	CATG	2 cut(s)	97, 379
Ksp22I	TGATCA	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	4 cut(s)	32, 48, 104, 305
Lsp1109I	GCAGC	4 cut(s)	29, 32, 35, 336
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	170, 284
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	5 cut(s)	63, 129, 209, 212, 221
MhlI	GDGCHC	3 cut(s)	37, 45, 101
MluCI	AATT	1 cut(s)	214
MnlI	CCTC	6 cut(s)	56, 59, 76, 79, 138, 192
MseI	TTAA	1 cut(s)	228
MspI	CCGG	3 cut(s)	52, 75, 240
MspR9I	CCNGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	414
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	97, 379
NlaIV	GGNNCC	2 cut(s)	34, 100
PagI	TCATGA	1 cut(s)	375
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	10, 19, 22, 25, 326
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	34, 100
PspPI	GGNCC	3 cut(s)	77, 147, 367
PstI	CTGCAG	2 cut(s)	19, 85
PstNI	CAGNNNCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	5 cut(s)	9, 18, 21, 24, 325
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	3 cut(s)	77, 147, 367
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	3 cut(s)	37, 45, 101
SetI	ASST	7 cut(s)	28, 45, 175, 282, 289, 310, 403
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	2 cut(s)	15, 81
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	170, 284
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	1 cut(s)	214
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	4 cut(s)	17, 20, 23, 324
TspDTI	ATGAA	1 cut(s)	82
XapI	RAATTY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XspI	CTAG	2 cut(s)	170, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.