Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010155

Physical Location & Seq

Genomic Coordinates Reverse (-)

60831117 .. 60833588

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG409500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGACAGCATTTAGATCAAACCTGATCAAACAATGTGCAAGTTTAAGAGTCTCTGAATCCCCAAAACCGAAAGGACTCCTCTGTTTCCACCTCAACCCCCCAAGTTTCATAGATGCCCGCATCATCAAGACCGGCTTCGATCCCAATACGTACCGCTCTAATTTTCAGCTCAAGAACTTGTTAGAACGAGGCCAGTTATCTCGAGCACGACAGGTGTTTGAGCAGATGCCTCAGAAAAACACTTTCTCAGTAAACCTGATGATTTCCAGTTATGTCAACTGTGGTAATCTTTCTAAGGCTAGAGAGTTTCTTGACGGCATGGTTGAGCGTACAGCTGTAACATGGACAATATTGATAGGTGGGTATTCGCAAGCTGGTCAATACCGTGAAGCATTTAAACTTTACGCCGAGATGCATAGGTGGGGAACTAAGCCAGATTATGTGACTTTTGCAACTCTCTTGTCTGGATGCAGCAACATGGATGCTACAAAGGAAGTAGTTCAGGTTCATTCTCATATCCTTAAATTGGGATATCATTCGACACTCATGGTCTGCAATTCTCTGGTTGATTCCTACTGCAAATCTCATTGCCTGGATTTTGCTTTTCGGCTTTTCAAGGAAATGCCTGAAAGAGATGCTGTTACATTCAATGCATTGATAACAGGGTACTCAAAAGATGGGTTGAATGAAGGTGCTATTAACCTCTTTGCTGAAATGCAAAATCTGGGTTACAAGCCTTCTGAATTTACATTTGCAGCAGTACTTTGTGCCGGTATCGGTTTAGATGACATTGTGCTTGGGCAACAGGTTCATGGTTTTGTGGTTAAGACTAATTTTGTTTGGAATGTTTTTGTGGGAAATGCATTGCTCGATTTCTACTCAAAGCATGACTATGTGGTTGAAGCAAGGAAACTTTTTGATGAGATGCCAGAGTTGGATTGTATTTCTTACAATATAATCATCTCCTCCTATGTATGGGATGGGCAATTTAAAGAGGCTCTTGATATTTTCCGTGAATTGCAGCTTACCAAATATGACCGGAAGCAATTCCCTTTTGCAACCATGTTGAGCATAGCAGCGAATACTCTGAACATAAACGTGGGCCGGCAGATACATTCCCAGGCCATTGTAGCAACAGCTGATTCAGAATCTCAGGTTGGAAATTCTTTGGTTGACATGTATGGCAAATGTGGCAGATATACCGAAGCCAGAAGTATATTTGCTAGTCTGGCTGACAGAAGTACAGTGCCATGGACTGCACTCATCTCAGCATATGTTCAGAAGGGACTCCATGAAGAAGGCCTGGAACTGTACAATGAGATGCGCAGAGGAGATGTTAGTCCCGACCAGGCCACTTTTGCAAGCATTTTAAGAGCCTCTGCAAATTTGGCTTCACTCTCACTAGGAAAGCAGTTACACTCATCAGTCATCAGATTAGGATTCATTTGCAACGTTTTTCCTGCCAGTGCACTTCTAGATATGTATGCGAAATGTGGGTCCATGAAAGATGCTCTTCAGACTTTTCAAGAGATGCCAAAGAGAAATATTGTATGTTGGAATGCCCTGATCTCAGCCTATGCACAAAATGGTGATGGTAAAGGGACTCTTAGATCATTTGAATGGATGGTTCAGTCAGGTTTTGCACCAGATTCTGTTAGCTTCTTGAGCGTTTTGACTGCTTGTAGTCACTGTGGGCTTGTTGAAGAAGGACTACATTACTTCAGCTCCTTGATGCATAACTCTAACATTGTTCCAAAGAGAGAACACTATGCATCAATGGTGGATGTGTTGTGTCGAAGTGGGAGATTTGATGAAGCAGAGAAATTAATGGCTCGAATGCCATTTAAGCCCGATGAGATTATGTGGTCGTCTGTACTAAACTCATGCAGAATTCATAAGAATCAAGAATTGGCAGAGAGAGCTGCAAGCAGACTTTTCAATATGGCCGAGCTTAGGGACGCAGCTGCTTATGTCAACTTGTCAAACATTTATGCAGAAACAGGTGAGTGGGAGAGTTTGAGGGAAGTGAAGAAGGCAATGAGGGAGAGAGGAGTGAGAAAGGTTACAGCGTATAGTTGGGTAGAAATCAAACACAAGATTCATGTATTTACAGTGAATGACCATAGCCATCCAGAGAGTGGAAAAATTATGTCAAAAATTGATGAGTTGGCGAAGGAGATGGAAGAGGAAGGACACAAGGCTGACGCAAGCTGTGCCCTTCACAATGAAGATGAGGAAATAAAAGTGGAGTCTCTTAAATATCACAGTGAACGCTTAGCAATTGCATTTGCATTGATCAGCACACCAGAAGGTTCGCCTATAGTGGTGATGAAGAATTTACGAGCTTGCACAGACTGCCATGCTGCAATTAAAGTGATCACTAAGATTGTTGGGAGGGAAATAACAGTTAGAGACTCGAGCAGGTTCCATCATTTTAGAGATGGGCTTTGCTCCTGTGGGGACTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

823

Amino Acids

92.64

Weight (kDa)

6.82

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	111 - 159	1.5e-15	PPR repeat family
PPR	PF01535	113 - 142	3.9e-08	PPR repeat
PPR_2	PF13041	212 - 255	8.4e-11	PPR repeat family
PPR	PF01535	214 - 243	2e-06	PPR repeat
PPR_2	PF13041	414 - 460	4e-10	PPR repeat family
PPR	PF01535	417 - 443	4e-07	PPR repeat
PPR_2	PF13041	514 - 562	3.4e-10	PPR repeat family
E_motif	PF20431	632 - 695	1.8e-12	E motif
DYW_deaminase	PF14432	731 - 823	2.9e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02010
malus_domestica	MD09G1003500.v1.1
prunus_persica	Prupe.3G313000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139751
rosa_laevigata	RLG00000019830
rosa_multiflora	Rmu_co8047706.1_g000001 Rmu_sc0009714.1_g000012
rosa_roxburghii	Rroxscaffold_2G00105230
rosa_rugosa	Rorug02G0359700 Rorug02G0359800 Rorug02G0359900 Rorug04G0363900
rosa_samantha	Rh2AG409400 Rh2AG409500 Rh2BG419800 Rh2BG419900 Rh2CG395700 Rh2CG395800 Rh2DG429300 Rh4CG451800
rosa_wichuraiana	Rw2G033420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1325
Acc36I	ACCTGC	1 cut(s)	2412
AccB7I	CCANNNNNTGG	1 cut(s)	2138
AccBSI	CCGCTC	1 cut(s)	156
AciI	CCGC	2 cut(s)	118, 154
AclI	AACGTT	1 cut(s)	1452
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	1944
AcsI	RAATTY	5 cut(s)	743, 1162, 1384, 1890, 2335
AcuI	CTGAAG	2 cut(s)	1499, 1705
AfaI	GTAC	7 cut(s)	152, 331, 668, 762, 1243, 1313, 1875
AfiI	CCNNNNNNNGG	4 cut(s)	526, 975, 1953, 2138
AflIII	ACRYGT	1 cut(s)	1176
AgsI	TTSAA	8 cut(s)	616, 649, 685, 902, 1526, 1619, 1703, 1939
AjnI	CCWGG	4 cut(s)	591, 1119, 1302, 1347
AjuI	GAANNNNNNNTTGG	4 cut(s)	1140, 1172, 1892, 1924
Alw21I	GWGCWC	2 cut(s)	208, 1471
Alw26I	GTCTC	3 cut(s)	55, 2256, 2406
Alw44I	GTGCAC	1 cut(s)	1467
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	1652
Ama87I	CYCGRG	2 cut(s)	201, 2416
AoxI	GGCC	6 cut(s)	190, 1102, 1122, 1300, 1350, 1944
ApaLI	GTGCAC	1 cut(s)	1467
ApeKI	GCWGC	8 cut(s)	471, 755, 1021, 1076, 1922, 1961, 1964, 2363
ApoI	RAATTY	5 cut(s)	743, 1162, 1384, 1890, 2335
ArsI	GACNNNNNNTTYG	2 cut(s)	1481, 1513
AseI	ATTAAT	1 cut(s)	1826
Asp700I	GAANNNNTTC	2 cut(s)	498, 1046
AspLEI	GCGC	1 cut(s)	1326
AspS9I	GGNCC	2 cut(s)	1102, 1497
AsuHPI	GGTGA	3 cut(s)	1601, 2015, 2338
AvaI	CYCGRG	2 cut(s)	201, 2416
AvaII	GGWCC	1 cut(s)	1497
BaeGI	GKGCMC	2 cut(s)	1471, 2218
BarI	GAAGNNNNNNTAC	2 cut(s)	1695, 1727
Bbv12I	GWGCWC	2 cut(s)	208, 1471
BbvI	GCAGC	8 cut(s)	483, 767, 1033, 1088, 1909, 1951, 1973, 2350
BccI	CCATC	8 cut(s)	671, 974, 1586, 1618, 2136, 2173, 2435, 2436
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	4 cut(s)	593, 1121, 1304, 1349
BclI	TGATCA	3 cut(s)	24, 2295, 2376
BcoDI	GTCTC	3 cut(s)	55, 2256, 2406
BfaI	CTAG	4 cut(s)	300, 1224, 1403, 1475
BfmI	CTRYAG	1 cut(s)	2319
BfuAI	ACCTGC	1 cut(s)	2412
BisI	GCNGC	8 cut(s)	472, 756, 1022, 1077, 1923, 1962, 1965, 2364
BlpI	GCTNAGC	1 cut(s)	2275
BlsI	GCNGC	8 cut(s)	473, 757, 1023, 1078, 1924, 1963, 1966, 2365
BmcAI	AGTACT	1 cut(s)	762
Bme1390I	CCNGG	4 cut(s)	593, 1121, 1304, 1349
Bme18I	GGWCC	1 cut(s)	1497
BmeT110I	CYCGRG	2 cut(s)	201, 2416
BmgT120I	GGNCC	2 cut(s)	1102, 1497
BmiI	GGNNCC	2 cut(s)	1498, 2426
BmrFI	CCNGG	4 cut(s)	593, 1121, 1304, 1349
Bpu10I	CCTNAGC	1 cut(s)	1952
Bpu1102I	GCTNAGC	1 cut(s)	2275
BpuEI	CTTGAG	2 cut(s)	155, 1684
BsaAI	YACGTR	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	1119, 1250
BsaWI	WCCGGW	1 cut(s)	1038
BsaXI	ACNNNNNCTCC	2 cut(s)	1709, 1739
Bsc4I	CCNNNNNNNGG	4 cut(s)	526, 975, 1953, 2138
Bse118I	RCCGGY	3 cut(s)	131, 770, 1104
Bse1I	ACTGG	3 cut(s)	193, 267, 1464
Bse3DI	GCAATG	3 cut(s)	586, 863, 2043
BseBI	CCWGG	4 cut(s)	593, 1121, 1304, 1349
BseDI	CCNNGG	2 cut(s)	1119, 1250
BseGI	GGATG	6 cut(s)	473, 487, 985, 1629, 1789, 2128
BseLI	CCNNNNNNNGG	4 cut(s)	526, 975, 1953, 2138
BseMI	GCAATG	3 cut(s)	586, 863, 2043
BseMII	CTCAG	5 cut(s)	245, 261, 1166, 1281, 1584
BseNI	ACTGG	3 cut(s)	193, 267, 1464
BseRI	GAGGAG	4 cut(s)	68, 955, 1344, 2064
BseSI	GKGCMC	2 cut(s)	1471, 2218
BseXI	GCAGC	8 cut(s)	483, 767, 1033, 1088, 1909, 1951, 1973, 2350
BsgI	GTGCAG	1 cut(s)	1242
BshFI	GGCC	6 cut(s)	192, 1104, 1124, 1302, 1352, 1946
BsiHKAI	GWGCWC	2 cut(s)	208, 1471
BsiHKCI	CYCGRG	2 cut(s)	201, 2416
BsiSI	CCGG	4 cut(s)	132, 771, 1039, 1105
BslFI	GGGAC	4 cut(s)	1299, 1326, 1615, 1970
BslI	CCNNNNNNNGG	4 cut(s)	526, 975, 1953, 2138
BsmAI	GTCTC	3 cut(s)	55, 2256, 2406
BsmFI	GGGAC	4 cut(s)	1299, 1326, 1615, 1970
BsmI	GAATGC	2 cut(s)	1564, 1842
BsnI	GGCC	6 cut(s)	192, 1104, 1124, 1302, 1352, 1946
BsoBI	CYCGRG	2 cut(s)	201, 2416
Bsp1286I	GDGCHC	3 cut(s)	208, 1471, 2218
Bsp1407I	TGTACA	1 cut(s)	1311
Bsp143I	GATC	7 cut(s)	14, 24, 139, 1566, 1610, 2295, 2376
Bsp1720I	GCTNAGC	1 cut(s)	2275
Bsp19I	CCATGG	1 cut(s)	1250
BspACI	CCGC	2 cut(s)	118, 154
BspANI	GGCC	6 cut(s)	192, 1104, 1124, 1302, 1352, 1946
BspCNI	CTCAG	5 cut(s)	244, 260, 1165, 1280, 1583
BspLI	GGNNCC	2 cut(s)	1498, 2426
BspMI	ACCTGC	1 cut(s)	2412
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	1518
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	3 cut(s)	586, 863, 2043
BsrFI	RCCGGY	3 cut(s)	131, 770, 1104
BsrGI	TGTACA	1 cut(s)	1311
BsrI	ACTGG	3 cut(s)	193, 267, 1464
BssAI	RCCGGY	3 cut(s)	131, 770, 1104
BssECI	CCNNGG	2 cut(s)	1119, 1250
BssMI	GATC	7 cut(s)	14, 24, 139, 1566, 1610, 2295, 2376
BssT1I	CCWWGG	1 cut(s)	1250
Bst2UI	CCWGG	4 cut(s)	593, 1121, 1304, 1349
Bst4CI	ACNGT	8 cut(s)	281, 386, 1246, 1311, 1691, 2113, 2267, 2407
Bst6I	CTCTTC	2 cut(s)	1518, 2178
BstAPI	GCANNNNNTGC	2 cut(s)	2213, 2355
BstAUI	TGTACA	1 cut(s)	1311
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	7 cut(s)	118, 372, 1106, 1363, 1927, 2209, 2347
BstDSI	CCRYGG	1 cut(s)	1250
BstF5I	GGATG	6 cut(s)	473, 487, 985, 1629, 1789, 2128
BstHHI	GCGC	1 cut(s)	1326
BstKTI	GATC	7 cut(s)	17, 27, 142, 1569, 1613, 2298, 2379
BstMAI	GTCTC	3 cut(s)	55, 2256, 2406
BstMBI	GATC	7 cut(s)	14, 24, 139, 1566, 1610, 2295, 2376
BstNI	CCWGG	4 cut(s)	593, 1121, 1304, 1349
BstNSI	RCATGY	1 cut(s)	1180
BstSCI	CCNGG	4 cut(s)	591, 1119, 1302, 1347
BstSFI	CTRYAG	1 cut(s)	2319
BstSLI	GKGCMC	2 cut(s)	1471, 2218
BstSNI	TACGTA	1 cut(s)	150
BstV1I	GCAGC	8 cut(s)	483, 767, 1033, 1088, 1909, 1951, 1973, 2350
BsuRI	GGCC	6 cut(s)	192, 1104, 1124, 1302, 1352, 1946
BtgI	CCRYGG	1 cut(s)	1250
BtsCI	GGATG	6 cut(s)	473, 487, 985, 1629, 1789, 2128
BtsIMutI	CAGTG	5 cut(s)	1251, 1471, 1687, 2118, 2272
BveI	ACCTGC	1 cut(s)	2412
Cac8I	GCNNGC	7 cut(s)	118, 372, 1106, 1363, 1927, 2209, 2347
CaiI	CAGNNNCTG	1 cut(s)	1652
CfoI	GCGC	1 cut(s)	1326
Cfr10I	RCCGGY	3 cut(s)	131, 770, 1104
Cfr13I	GGNCC	2 cut(s)	1102, 1497
CseI	GACGC	2 cut(s)	1967, 2213
Csp6I	GTAC	7 cut(s)	151, 330, 667, 761, 1242, 1312, 1874
CviQI	GTAC	7 cut(s)	151, 330, 667, 761, 1242, 1312, 1874
DpnI	GATC	7 cut(s)	16, 26, 141, 1568, 1612, 2297, 2378
DpnII	GATC	7 cut(s)	14, 24, 139, 1566, 1610, 2295, 2376
DraI	TTTAAA	2 cut(s)	397, 991
EaeI	YGGCCR	1 cut(s)	1944
Eam1104I	CTCTTC	2 cut(s)	1518, 2178
EarI	CTCTTC	2 cut(s)	1518, 2178
Eco105I	TACGTA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	1250
Eco147I	AGGCCT	1 cut(s)	1302
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	1497
Eco57I	CTGAAG	2 cut(s)	1499, 1705
Eco88I	CYCGRG	2 cut(s)	201, 2416
EcoRI	GAATTC	1 cut(s)	1890
EcoRII	CCWGG	4 cut(s)	591, 1119, 1302, 1347
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	1250
EcoT22I	ATGCAT	5 cut(s)	417, 655, 865, 1737, 1774
ErhI	CCWWGG	1 cut(s)	1250
FalI	AAGNNNNNCTT	8 cut(s)	119, 151, 984, 1016, 1497, 1529, 1590, 1622
FaqI	GGGAC	4 cut(s)	1299, 1326, 1615, 1970
FauI	CCCGC	1 cut(s)	125
FauNDI	CATATG	1 cut(s)	1273
FbaI	TGATCA	3 cut(s)	24, 2295, 2376
Fnu4HI	GCNGC	8 cut(s)	472, 756, 1022, 1077, 1923, 1962, 1965, 2364
FokI	GGATG	6 cut(s)	480, 494, 992, 1636, 1796, 2115
Fsp4HI	GCNGC	8 cut(s)	472, 756, 1022, 1077, 1923, 1962, 1965, 2364
FspBI	CTAG	4 cut(s)	300, 1224, 1403, 1475
FspI	TGCGCA	1 cut(s)	1325
GlaI	GCGC	1 cut(s)	1325
GluI	GCNGC	8 cut(s)	472, 756, 1022, 1077, 1923, 1962, 1965, 2364
HaeIII	GGCC	6 cut(s)	192, 1104, 1124, 1302, 1352, 1946
HapII	CCGG	4 cut(s)	132, 771, 1039, 1105
HgaI	GACGC	2 cut(s)	1967, 2213
HhaI	GCGC	1 cut(s)	1326
Hin6I	GCGC	1 cut(s)	1324
HinP1I	GCGC	1 cut(s)	1324
HincII	GTYRAC	3 cut(s)	277, 1174, 1975
HindII	GTYRAC	3 cut(s)	277, 1174, 1975
HpaII	CCGG	4 cut(s)	132, 771, 1039, 1105
HphI	GGTGA	3 cut(s)	1601, 2015, 2338
Hpy166II	GTNNAC	6 cut(s)	253, 277, 1174, 1469, 1975, 2270
Hpy188I	TCNGA	8 cut(s)	55, 234, 742, 1089, 1147, 1281, 1433, 1518
Hpy8I	GTNNAC	6 cut(s)	253, 277, 1174, 1469, 1975, 2270
HpyCH4III	ACNGT	8 cut(s)	281, 386, 1246, 1311, 1691, 2113, 2267, 2407
HpyCH4IV	ACGT	3 cut(s)	149, 1098, 1452
HpySE526I	ACGT	3 cut(s)	149, 1098, 1452
HspAI	GCGC	1 cut(s)	1324
KroI	GCCGGC	1 cut(s)	1104
KroNI	GCCGGC	1 cut(s)	1106
Ksp22I	TGATCA	3 cut(s)	24, 2295, 2376
Kzo9I	GATC	7 cut(s)	14, 24, 139, 1566, 1610, 2295, 2376
LguI	GCTCTTC	1 cut(s)	1518
LmnI	GCTCC	2 cut(s)	1730, 2456
Lsp1109I	GCAGC	8 cut(s)	483, 767, 1033, 1088, 1909, 1951, 1973, 2350
MaeI	CTAG	4 cut(s)	300, 1224, 1403, 1475
MaeII	ACGT	3 cut(s)	149, 1098, 1452
MaeIII	GTNAC	7 cut(s)	337, 442, 640, 728, 1413, 1685, 2062
MalI	GATC	7 cut(s)	16, 26, 141, 1568, 1612, 2297, 2378
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	7 cut(s)	14, 24, 139, 1566, 1610, 2295, 2376
MboII	GAAGA	7 cut(s)	1307, 1505, 1715, 2041, 2195, 2240, 2344
MfeI	CAATTG	1 cut(s)	2280
MhlI	GDGCHC	3 cut(s)	208, 1471, 2218
MlyI	GAGTC	6 cut(s)	57, 69, 1281, 1597, 2258, 2408
MmeI	TCCRAC	3 cut(s)	915, 1138, 1535
Mph1103I	ATGCAT	5 cut(s)	417, 655, 865, 1737, 1774
MroNI	GCCGGC	1 cut(s)	1104
MroXI	GAANNNNTTC	2 cut(s)	498, 1046
MslI	CAYNNNNRTG	3 cut(s)	891, 1097, 1618
MspA1I	CMGCKG	3 cut(s)	335, 1139, 1964
MspI	CCGG	4 cut(s)	132, 771, 1039, 1105
MspR9I	CCNGG	4 cut(s)	593, 1121, 1304, 1349
MunI	CAATTG	1 cut(s)	2280
Mva1269I	GAATGC	2 cut(s)	1564, 1842
MvaI	CCWGG	4 cut(s)	593, 1121, 1304, 1349
NaeI	GCCGGC	1 cut(s)	1106
NcoI	CCATGG	1 cut(s)	1250
NdeI	CATATG	1 cut(s)	1273
NdeII	GATC	7 cut(s)	14, 24, 139, 1566, 1610, 2295, 2376
NgoMIV	GCCGGC	1 cut(s)	1104
NlaIV	GGNNCC	2 cut(s)	1498, 2426
NmeAIII	GCCGAG	2 cut(s)	433, 1972
NmuCI	GTSAC	2 cut(s)	442, 1685
NsbI	TGCGCA	1 cut(s)	1325
NsiI	ATGCAT	5 cut(s)	417, 655, 865, 1737, 1774
NspI	RCATGY	1 cut(s)	1180
PaeR7I	CTCGAG	2 cut(s)	201, 2416
PceI	AGGCCT	1 cut(s)	1302
PciI	ACATGT	1 cut(s)	1176
PciSI	GCTCTTC	1 cut(s)	1518
PctI	GAATGC	2 cut(s)	1564, 1842
PdiI	GCCGGC	1 cut(s)	1106
PdmI	GAANNNNTTC	2 cut(s)	498, 1046
PfeI	GAWTC	8 cut(s)	56, 569, 1142, 1148, 1440, 1649, 1900, 2098
PflMI	CCANNNNNTGG	1 cut(s)	2138
PkrI	GCNGC	8 cut(s)	473, 757, 1023, 1078, 1924, 1963, 1966, 2365
PleI	GAGTC	6 cut(s)	56, 69, 1281, 1597, 2257, 2408
PpsI	GAGTC	6 cut(s)	56, 69, 1281, 1597, 2257, 2408
Ppu21I	YACGTR	1 cut(s)	150
PscI	ACATGT	1 cut(s)	1176
PshBI	ATTAAT	1 cut(s)	1826
Psp1406I	AACGTT	1 cut(s)	1452
Psp6I	CCWGG	4 cut(s)	591, 1119, 1302, 1347
PspGI	CCWGG	4 cut(s)	591, 1119, 1302, 1347
PspN4I	GGNNCC	2 cut(s)	1498, 2426
PspPI	GGNCC	2 cut(s)	1102, 1497
PspXI	VCTCGAGB	1 cut(s)	2416
PsrI	GAACNNNNNNTAC	2 cut(s)	489, 521
PstNI	CAGNNNCTG	1 cut(s)	1652
PvuII	CAGCTG	3 cut(s)	335, 1139, 1964
RsaI	GTAC	7 cut(s)	152, 331, 668, 762, 1243, 1313, 1875
RsaNI	GTAC	7 cut(s)	151, 330, 667, 761, 1242, 1312, 1874
RseI	CAYNNNNRTG	3 cut(s)	891, 1097, 1618
SapI	GCTCTTC	1 cut(s)	1518
SatI	GCNGC	8 cut(s)	472, 756, 1022, 1077, 1923, 1962, 1965, 2364
Sau3AI	GATC	7 cut(s)	14, 24, 139, 1566, 1610, 2295, 2376
Sau96I	GGNCC	2 cut(s)	1102, 1497
ScaI	AGTACT	1 cut(s)	762
SchI	GAGTC	6 cut(s)	57, 69, 1281, 1597, 2258, 2408
ScrFI	CCNGG	4 cut(s)	593, 1121, 1304, 1349
SduI	GDGCHC	3 cut(s)	208, 1471, 2218
SfcI	CTRYAG	1 cut(s)	2319
Sfr274I	CTCGAG	2 cut(s)	201, 2416
SinI	GGWCC	1 cut(s)	1497
SlaI	CTCGAG	2 cut(s)	201, 2416
SmiMI	CAYNNNNRTG	3 cut(s)	891, 1097, 1618
SmlI	CTYRAG	4 cut(s)	170, 201, 1663, 2416
SmoI	CTYRAG	4 cut(s)	170, 201, 1663, 2416
SnaBI	TACGTA	1 cut(s)	150
SseBI	AGGCCT	1 cut(s)	1302
SsiI	CCGC	2 cut(s)	118, 154
SspI	AATATT	2 cut(s)	351, 1546
SspMI	CTAG	4 cut(s)	300, 1224, 1403, 1475
StuI	AGGCCT	1 cut(s)	1302
StyD4I	CCNGG	4 cut(s)	591, 1119, 1302, 1347
StyI	CCWWGG	1 cut(s)	1250
TaaI	ACNGT	8 cut(s)	281, 386, 1246, 1311, 1691, 2113, 2267, 2407
TaiI	ACGT	3 cut(s)	152, 1101, 1455
TaqI	TCGA	7 cut(s)	138, 202, 539, 870, 1795, 1834, 2417
TatI	WGTACW	4 cut(s)	760, 1241, 1311, 1873
TfiI	GAWTC	8 cut(s)	56, 569, 1142, 1148, 1440, 1649, 1900, 2098
TscAI	CASTG	5 cut(s)	1251, 1471, 1694, 2118, 2272
TseFI	GTSAC	2 cut(s)	442, 1685
TseI	GCWGC	8 cut(s)	471, 755, 1021, 1076, 1922, 1961, 1964, 2363
Tsp45I	GTSAC	2 cut(s)	442, 1685
TspGWI	ACGGA	1 cut(s)	1001
TspRI	CASTG	5 cut(s)	1251, 1471, 1694, 2118, 2272
Van91I	CCANNNNNTGG	1 cut(s)	2138
VneI	GTGCAC	1 cut(s)	1467
VpaK11BI	GGWCC	1 cut(s)	1497
VspI	ATTAAT	1 cut(s)	1826
XapI	RAATTY	5 cut(s)	743, 1162, 1384, 1890, 2335
XbaI	TCTAGA	1 cut(s)	1474
XceI	RCATGY	1 cut(s)	1180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2135
XhoI	CTCGAG	2 cut(s)	201, 2416
XmnI	GAANNNNTTC	2 cut(s)	498, 1046
XspI	CTAG	4 cut(s)	300, 1224, 1403, 1475
ZrmI	AGTACT	1 cut(s)	762
Zsp2I	ATGCAT	5 cut(s)	417, 655, 865, 1737, 1774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.