Rorug02G0420100
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011195
Physical Location & Seq
Reverse (-)
53968600 .. 53972899
4300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0420100.1

Sequence Viewer

Length: 2292 bp
ATGTGGAGGATTGAGTATGGAAAGGGTGCAAATGACCCTCATTTATTCAGCACAAACAACTTTCATGGGAGGCAGACATGGAAATTTGACCCAAATGCAGGCACACCAGAAGAGCGAGCAGAGGTTGAAGCCGCTCGTGAGAATTACTACCAAAATCGGTTCAAGATCCAGCCCAGTAGTGATCTCCTTTGGCGTTTTCAGATGCTAAGAGAGAGAAACTTCAAGCAAGAAATTCCTCCAGTAAGAATTGGGGAAGGTGATGACATTACATTTGATCAGGCCACAGCTGCCTATAGGAGGGCTGCTACCTTCTGGAATGCCTTGCAATCACCCCATGGTCATTGGCCTGCTGAAATTGCTGGCATAAATTTTTTCTGTCCTCCCTTGGTAATGAGTTTATACTCAATGGGATATCTTAATGTTGTTTTCTCTGCTGAGCATAAGAAGGAAATCTTGCGCTACTCGTACAATCATCAGAATGAAGATGGTGGGTGGGGATTGCACATTGCAGGGCCTAGTATGATGTTCACCACATGTCTCAACTACTGTATGATGCGTATTCTCGGAGAAGGCACTGAGGGTGGTCAAGATAATGCCTGTGCAAGGGCCCGGAAATGGATCCTTGACCGCGGTGGTGCACAATATTCTGCTTCATGGGGAAAGACCTGGATGGCGATACTTGGTGTTTATGATTGGGAAGGAAGCAACCCTATACCCCCGGAGTTTTGGACTTACCCCACTCTGCTTCCTTTTCATCCATCAAAGATGCTCTGCTTCTGTAGGTTAACTTACCTACCCATGTCCTACTTTTATGCAAAAAAATTTGTTGGCCCAATCACTCCTCTGGTTGAACAATTGAGACAAGAAATTTACTGTGAACCTTACAGTGAAATTAAGTGGAGTAAAGTGCGCCATCATTGTGCAAAGGAAGATAACTACTATCCTCATGGAAGGGTACAACGTTTTATGTGGAACACTCTTTACCATGTTTGTGAGCCTCTTCTTGCTTGGTGGCCGTTTAAGAAGATCAGAGACAATGCTATTCAATTTACCATTGACCAAATCCATTATGAAGATGAGAACAGTCGCTACATTACCATTGGATGTGTCGAAAAGCCATTGATGATGCTTGCCTGTTGGGTTGAGGATCCTAGCGGAGAAGCTTTTAAGAAGCATCTTCCTAGACTTGATGATTATATTTGGCTCGGTGAAGATGGAATCAAGATTCAGAGTTTTGGCAGCCAGACTTGGGATTGTTCTCTTGCAGTCCAAGCTTTGCTTGCTGGGAATCTCCATAATGAATTTGGACTTGTACTTAAGAAAGCACATGACTTCCTAAAGATATCCCAGGTGAGGATCAATCCTTGTGGTGACTACCTAGCTCATTTCCGTCACATTTCCAAAGGATGCTGGACTTTGTCTGATCGGGATCATGGATGGCAAGTTTCAGATTGCACTGCAGAAGCGTTGAGGTGCTGCTGTCTGTTTGCAATGATGTCACCAGAGGTTGTTGGCGAGCCAATGGAAGCCGAGTGTATGTATGATGCTGTCAATGTCATAATGTCACTACAGAGTCCAAATGGTGGTGTATCACCATGGGAGCCGACTGGAGCTCCTAAATGGTTGGAGTGGCTCAACCCTGTCGAATTTCTTGAGGACGCTGTCATTGAATATGATTACATCGAGTGCACTTCATCTTCGATTCAGGCCTTATTTTTGTTTAGGAAGTTGTATCCTAGTCACAGAAGGAAAGAGATCAAGAACTTCATCACAAGGGCTGCAGACTACATTGAAAGCATACAATACGCTGATGGCTCATGGTATGGAAATTGGGGTATCTGCTTTCTCTATGGAACATGGTTTGCAATCAAAGGGTTAGAGGCTGTAGGAAGAACCTACCACAATTGCGAGGCAGTTCGCAAAGGTGTTGACTTTTTGCTAAAAACACAAAGGGAAGATGGTGGTTGGGGAGAGCACTACACCTCATGCACGAACAAGAAATACACAGCTCAAGACAGTACAAATCTGGTGCAAACCGCCCTTGGATTAATGGGTCTAATTCACGGTCGACAGGGTGAGAGAGATCCAACTCCTATTCACCGTGCTGCAAGGGTCTTGATGAACGGTCAGTTGGATGATGGTGATTTCCCCCAACAGGAACTGATGGGACTTTTCATGAGGAATGCAATGTTACACTATGGAGCATATAGGAATGTTTTCCCATTGTGGGCTCTTGGAGAGTACCGTACGTACTCTGGAGCAGTTGCCGTACCAAAAGGATTTGAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004888 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009975 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019199 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030054 GO:0033218 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0042221 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044464 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0052652 GO:0055044 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0098542 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

763

Amino Acids

87.96

Weight (kDa)

6.16

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 100 - 398 2.1e-33 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 414 - 749 1.3e-46 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73080
fragaria_vesca FvH4_6g37420 FvH4_6g37430
malus_domestica MD09G1158300.v1.1 MD17G1144300.v1.1
prunus_persica Prupe.3G167800_v2.0.a1 Prupe.3G167800_v2.0.a1 Prupe.3G167900_v2.0.a1
pyrus_communis pycom09g07690 pycom17g13740
rosa_chinensis RchiOBHm_Chr2g0150241
rosa_laevigata RLG00000020481
rosa_multiflora Rmu_ssc0000020.1_g000002
rosa_roxburghii Rroxscaffold_2G00097340
rosa_rugosa Rorug02G0420100
rosa_samantha Rh2AG479100 Rh2BG491400 Rh2CG465300 Rh2DG500200
rosa_wichuraiana Rw2G039090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1583
AccBSI CCGCTC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 2068
AccII CGCG 1 cut(s) 630
AciI CCGC 5 cut(s) 132, 628, 630, 1155, 2037
AclI AACGTT 1 cut(s) 961
AclWI GGATC 8 cut(s) 160, 613, 626, 1142, 1155, 1364, 1437, 2078
AcoI YGGCCR 1 cut(s) 1013
AcsI RAATTY 7 cut(s) 83, 231, 367, 821, 867, 1301, 1646
AfaI GTAC 8 cut(s) 467, 957, 1314, 2020, 2243, 2248, 2252, 2271
AfiI CCNNNNNNNGG 9 cut(s) 98, 297, 603, 615, 1249, 1353, 1583, 2155, 2227
AflII CTTAAG 1 cut(s) 1316
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 7 cut(s) 128, 163, 223, 851, 1046, 1670, 1793
AjnI CCWGG 2 cut(s) 665, 1347
AjuI GAANNNNNNNTTGG 2 cut(s) 2114, 2146
AluBI AGCT 6 cut(s) 287, 1163, 1274, 1382, 1613, 2009
AluI AGCT 6 cut(s) 287, 1163, 1274, 1382, 1613, 2009
Alw21I GWGCWC 4 cut(s) 640, 1615, 1691, 1977
Alw26I GTCTC 3 cut(s) 542, 853, 1026
Alw44I GTGCAC 2 cut(s) 636, 1687
AlwI GGATC 8 cut(s) 160, 613, 626, 1142, 1155, 1364, 1437, 2078
AlwNI CAGNNNCTG 1 cut(s) 2161
AoxI GGCC 7 cut(s) 279, 344, 512, 606, 829, 1013, 1707
ApaI GGGCCC 1 cut(s) 610
ApaLI GTGCAC 2 cut(s) 636, 1687
ApeKI GCWGC 6 cut(s) 287, 302, 1239, 1476, 1778, 2105
ApoI RAATTY 7 cut(s) 83, 231, 367, 821, 867, 1301, 1646
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AseI ATTAAT 1 cut(s) 2048
Asp700I GAANNNNTTC 1 cut(s) 2216
AspLEI GCGC 2 cut(s) 459, 912
AspS9I GGNCC 4 cut(s) 512, 606, 607, 830
AsuC2I CCSGG 2 cut(s) 610, 719
BaeGI GKGCMC 3 cut(s) 610, 640, 1691
BamHI GGATCC 2 cut(s) 618, 1147
BanII GRGCYC 3 cut(s) 610, 1615, 2233
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 4 cut(s) 640, 1615, 1691, 1977
BbvI GCAGC 6 cut(s) 274, 289, 1251, 1463, 1765, 2092
BceAI ACGGC 2 cut(s) 1000, 2252
BciT130I CCWGG 2 cut(s) 667, 1349
BciVI GTATCC 1 cut(s) 1743
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 2 cut(s) 610, 719
BcoDI GTCTC 3 cut(s) 542, 853, 1026
BfaI CTAG 5 cut(s) 516, 1152, 1182, 1379, 1737
BfmI CTRYAG 6 cut(s) 292, 778, 1458, 1568, 1779, 1884
BfrI CTTAAG 1 cut(s) 1316
BfuI GTATCC 1 cut(s) 1743
BisI GCNGC 7 cut(s) 132, 288, 303, 1240, 1477, 1779, 2106
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 7 cut(s) 133, 289, 304, 1241, 1478, 1780, 2107
Bme1390I CCNGG 4 cut(s) 610, 667, 719, 1349
BmgT120I GGNCC 4 cut(s) 512, 606, 607, 830
BmiI GGNNCC 4 cut(s) 608, 620, 1149, 1602
BmrFI CCNGG 4 cut(s) 610, 667, 719, 1349
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 7 cut(s) 192, 543, 756, 1116, 1183, 1397, 1534
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 3 cut(s) 222, 1629, 2277
Bpu1102I GCTNAGC 1 cut(s) 435
BpuEI CTTGAG 2 cut(s) 1673, 1995
BpuMI CCSGG 2 cut(s) 610, 719
BsaAI YACGTR 1 cut(s) 2250
BsaBI GATNNNNATC 1 cut(s) 1428
BsaJI CCNNGG 7 cut(s) 334, 384, 628, 717, 1347, 1595, 2041
BsaXI ACNNNNNCTCC 2 cut(s) 1597, 1627
Bsc4I CCNNNNNNNGG 9 cut(s) 98, 297, 603, 615, 1249, 1353, 1583, 2155, 2227
Bse1I ACTGG 3 cut(s) 174, 239, 1612
Bse3DI GCAATG 3 cut(s) 504, 1497, 2193
Bse8I GATNNNNATC 1 cut(s) 1428
BseBI CCWGG 2 cut(s) 667, 1349
BseDI CCNNGG 7 cut(s) 334, 384, 628, 717, 1347, 1595, 2041
BseGI GGATG 6 cut(s) 675, 754, 1109, 1412, 1442, 2140
BseJI GATNNNNATC 1 cut(s) 1428
BseLI CCNNNNNNNGG 9 cut(s) 98, 297, 603, 615, 1249, 1353, 1583, 2155, 2227
BseMI GCAATG 3 cut(s) 504, 1497, 2193
BseMII CTCAG 2 cut(s) 426, 567
BseNI ACTGG 3 cut(s) 174, 239, 1612
BseRI GAGGAG 1 cut(s) 831
BseSI GKGCMC 3 cut(s) 610, 640, 1691
BseXI GCAGC 6 cut(s) 274, 289, 1251, 1463, 1765, 2092
BseYI CCCAGC 1 cut(s) 1283
Bsh1236I CGCG 1 cut(s) 630
Bsh1285I CGRYCG 1 cut(s) 2068
BshFI GGCC 7 cut(s) 281, 346, 514, 608, 831, 1015, 1709
BsiEI CGRYCG 1 cut(s) 2068
BsiHKAI GWGCWC 4 cut(s) 640, 1615, 1691, 1977
BsiSI CCGG 2 cut(s) 610, 719
BsiWI CGTACG 1 cut(s) 2246
BslFI GGGAC 1 cut(s) 2181
BslI CCNNNNNNNGG 9 cut(s) 98, 297, 603, 615, 1249, 1353, 1583, 2155, 2227
BsmAI GTCTC 3 cut(s) 542, 853, 1026
BsmFI GGGAC 1 cut(s) 2181
BsmI GAATGC 2 cut(s) 322, 2188
BsnI GGCC 7 cut(s) 281, 346, 514, 608, 831, 1015, 1709
Bsp120I GGGCCC 1 cut(s) 606
Bsp1286I GDGCHC 6 cut(s) 610, 640, 1615, 1691, 1977, 2233
Bsp1720I GCTNAGC 1 cut(s) 435
Bsp19I CCATGG 2 cut(s) 334, 1595
BspACI CCGC 5 cut(s) 132, 628, 630, 1155, 2037
BspANI GGCC 7 cut(s) 281, 346, 514, 608, 831, 1015, 1709
BspCNI CTCAG 2 cut(s) 427, 568
BspFNI CGCG 1 cut(s) 630
BspHI TCATGA 1 cut(s) 2175
BspLI GGNNCC 4 cut(s) 608, 620, 1149, 1602
BspMAI CTGCAG 2 cut(s) 1462, 1783
BspPI GGATC 8 cut(s) 160, 613, 626, 1142, 1155, 1364, 1437, 2078
BspQI GCTCTTC 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 1316
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 3 cut(s) 504, 1497, 2193
BsrI ACTGG 3 cut(s) 174, 239, 1612
BssECI CCNNGG 7 cut(s) 334, 384, 628, 717, 1347, 1595, 2041
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 4 cut(s) 334, 384, 1595, 2041
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 2 cut(s) 667, 1349
Bst4CI ACNGT 9 cut(s) 548, 875, 887, 1085, 2018, 2066, 2102, 2126, 2246
Bst6I CTCTTC 2 cut(s) 105, 1005
BstAFI CTTAAG 1 cut(s) 1316
BstBAI YACGTR 1 cut(s) 2250
BstC8I GCNNGC 7 cut(s) 100, 117, 348, 361, 1131, 1281, 1517
BstDEI CTNAG 3 cut(s) 206, 435, 576
BstDSI CCRYGG 3 cut(s) 334, 628, 1595
BstENI CCTNNNNNAGG 2 cut(s) 295, 601
BstF5I GGATG 6 cut(s) 675, 754, 1109, 1412, 1442, 2140
BstFNI CGCG 1 cut(s) 630
BstHHI GCGC 2 cut(s) 459, 912
BstMAI GTCTC 3 cut(s) 542, 853, 1026
BstMCI CGRYCG 1 cut(s) 2068
BstMWI GCNNNNNNNGC 4 cut(s) 287, 356, 1271, 1280
BstNI CCWGG 2 cut(s) 667, 1349
BstNSI RCATGY 1 cut(s) 537
BstSCI CCNGG 4 cut(s) 608, 665, 717, 1347
BstSFI CTRYAG 6 cut(s) 292, 778, 1458, 1568, 1779, 1884
BstSLI GKGCMC 3 cut(s) 610, 640, 1691
BstSNI TACGTA 1 cut(s) 2250
BstUI CGCG 1 cut(s) 630
BstV1I GCAGC 6 cut(s) 274, 289, 1251, 1463, 1765, 2092
BstX2I RGATCY 4 cut(s) 165, 618, 1147, 2083
BstYI RGATCY 4 cut(s) 165, 618, 1147, 2083
BsuI GTATCC 1 cut(s) 1743
BsuRI GGCC 7 cut(s) 281, 346, 514, 608, 831, 1015, 1709
BtgI CCRYGG 3 cut(s) 334, 628, 1595
BtsCI GGATG 6 cut(s) 675, 754, 1109, 1412, 1442, 2140
BtsI GCAGTG 1 cut(s) 1455
BtsIMutI CAGTG 3 cut(s) 573, 892, 1455
Cac8I GCNNGC 7 cut(s) 100, 117, 348, 361, 1131, 1281, 1517
CaiI CAGNNNCTG 1 cut(s) 2161
CciI TCATGA 1 cut(s) 2175
CfoI GCGC 2 cut(s) 459, 912
Cfr13I GGNCC 4 cut(s) 512, 606, 607, 830
Cfr42I CCGCGG 1 cut(s) 631
CseI GACGC 1 cut(s) 1667
Csp6I GTAC 8 cut(s) 466, 956, 1313, 2019, 2242, 2247, 2251, 2270
CspCI CAANNNNNGTGG 2 cut(s) 1348, 1383
CviQI GTAC 8 cut(s) 466, 956, 1313, 2019, 2242, 2247, 2251, 2270
DdeI CTNAG 3 cut(s) 206, 435, 576
EaeI YGGCCR 1 cut(s) 1013
Eam1104I CTCTTC 2 cut(s) 105, 1005
EarI CTCTTC 2 cut(s) 105, 1005
Ecl136II GAGCTC 1 cut(s) 1613
Eco105I TACGTA 1 cut(s) 2250
Eco130I CCWWGG 4 cut(s) 334, 384, 1595, 2041
Eco147I AGGCCT 1 cut(s) 1709
Eco24I GRGCYC 3 cut(s) 610, 1615, 2233
Eco32I GATATC 2 cut(s) 413, 1344
Eco53kI GAGCTC 1 cut(s) 1613
EcoICRI GAGCTC 1 cut(s) 1613
EcoNI CCTNNNNNAGG 2 cut(s) 295, 601
EcoO109I RGGNCCY 2 cut(s) 512, 606
EcoRII CCWGG 2 cut(s) 665, 1347
EcoRV GATATC 2 cut(s) 413, 1344
EcoT14I CCWWGG 4 cut(s) 334, 384, 1595, 2041
EcoT38I GRGCYC 3 cut(s) 610, 1615, 2233
ErhI CCWWGG 4 cut(s) 334, 384, 1595, 2041
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 1263, 1295
FaqI GGGAC 1 cut(s) 2181
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 2068
Fnu4HI GCNGC 7 cut(s) 132, 288, 303, 1240, 1477, 1779, 2106
FokI GGATG 6 cut(s) 682, 741, 1116, 1419, 1449, 2147
FriOI GRGCYC 3 cut(s) 610, 1615, 2233
Fsp4HI GCNGC 7 cut(s) 132, 288, 303, 1240, 1477, 1779, 2106
FspBI CTAG 5 cut(s) 516, 1152, 1182, 1379, 1737
GlaI GCGC 2 cut(s) 458, 911
GluI GCNGC 7 cut(s) 132, 288, 303, 1240, 1477, 1779, 2106
GsaI CCCAGC 1 cut(s) 1287
GsuI CTGGAG 3 cut(s) 222, 1629, 2277
HaeIII GGCC 7 cut(s) 281, 346, 514, 608, 831, 1015, 1709
HapII CCGG 2 cut(s) 610, 719
HgaI GACGC 1 cut(s) 1667
HhaI GCGC 2 cut(s) 459, 912
Hin6I GCGC 2 cut(s) 457, 910
HinP1I GCGC 2 cut(s) 457, 910
HincII GTYRAC 3 cut(s) 786, 1930, 2069
HindII GTYRAC 3 cut(s) 786, 1930, 2069
HindIII AAGCTT 2 cut(s) 1161, 1272
HinfI GANTC 5 cut(s) 1218, 1225, 1288, 1573, 1702
HpaI GTTAAC 1 cut(s) 786
HpaII CCGG 2 cut(s) 610, 719
Hpy166II GTNNAC 7 cut(s) 528, 638, 786, 878, 1689, 1930, 2069
Hpy188I TCNGA 7 cut(s) 201, 477, 566, 1031, 1230, 1423, 1450
Hpy8I GTNNAC 7 cut(s) 528, 638, 786, 878, 1689, 1930, 2069
HpyAV CCTTC 7 cut(s) 248, 319, 439, 563, 692, 945, 1740
HpyCH4III ACNGT 9 cut(s) 548, 875, 887, 1085, 2018, 2066, 2102, 2126, 2246
HpyCH4IV ACGT 2 cut(s) 961, 2249
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 356, 1271, 1280
HpyF3I CTNAG 3 cut(s) 206, 435, 576
HpySE526I ACGT 2 cut(s) 961, 2249
HspAI GCGC 2 cut(s) 457, 910
Ksp22I TGATCA 1 cut(s) 274
KspAI GTTAAC 1 cut(s) 786
KspI CCGCGG 1 cut(s) 631
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 5 cut(s) 1600, 1610, 1618, 2201, 2258
Lsp1109I GCAGC 6 cut(s) 274, 289, 1251, 1463, 1765, 2092
LweI GCATC 7 cut(s) 192, 543, 756, 1116, 1183, 1397, 1534
MaeI CTAG 5 cut(s) 516, 1152, 1182, 1379, 1737
MaeII ACGT 2 cut(s) 961, 2249
MaeIII GTNAC 6 cut(s) 1370, 1391, 1497, 1563, 1739, 2190
MbiI CCGCTC 1 cut(s) 134
MfeI CAATTG 2 cut(s) 854, 1903
MflI RGATCY 4 cut(s) 165, 618, 1147, 2083
MhlI GDGCHC 6 cut(s) 610, 640, 1615, 1691, 1977, 2233
MlyI GAGTC 1 cut(s) 1582
MmeI TCCRAC 3 cut(s) 1605, 2111, 2112
MroXI GAANNNNTTC 1 cut(s) 2216
MseI TTAA 7 cut(s) 417, 785, 894, 1020, 1167, 1317, 2048
MslI CAYNNNNRTG 3 cut(s) 477, 918, 990
MspA1I CMGCKG 2 cut(s) 287, 630
MspCI CTTAAG 1 cut(s) 1316
MspI CCGG 2 cut(s) 610, 719
MspR9I CCNGG 4 cut(s) 610, 667, 719, 1349
MunI CAATTG 2 cut(s) 854, 1903
Mva1269I GAATGC 2 cut(s) 322, 2188
MvaI CCWGG 2 cut(s) 667, 1349
MvnI CGCG 1 cut(s) 630
MwoI GCNNNNNNNGC 4 cut(s) 287, 356, 1271, 1280
NciI CCSGG 2 cut(s) 610, 719
NcoI CCATGG 2 cut(s) 334, 1595
NlaIV GGNNCC 4 cut(s) 608, 620, 1149, 1602
NmeAIII GCCGAG 1 cut(s) 1555
NmuCI GTSAC 5 cut(s) 1370, 1391, 1497, 1563, 1739
NspI RCATGY 1 cut(s) 537
PagI TCATGA 1 cut(s) 2175
PceI AGGCCT 1 cut(s) 1709
PciI ACATGT 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 2 cut(s) 322, 2188
PdmI GAANNNNTTC 1 cut(s) 2216
PfeI GAWTC 4 cut(s) 1218, 1225, 1288, 1702
Pfl23II CGTACG 1 cut(s) 2246
PflFI GACNNNGTC 2 cut(s) 1417, 1661
PflMI CCANNNNNTGG 1 cut(s) 1583
PkrI GCNGC 7 cut(s) 133, 289, 304, 1241, 1478, 1780, 2107
PleI GAGTC 1 cut(s) 1581
PpsI GAGTC 1 cut(s) 1581
Ppu21I YACGTR 1 cut(s) 2250
PscI ACATGT 1 cut(s) 533
PshBI ATTAAT 1 cut(s) 2048
Psp124BI GAGCTC 1 cut(s) 1615
Psp1406I AACGTT 1 cut(s) 961
Psp6I CCWGG 2 cut(s) 665, 1347
PspFI CCCAGC 1 cut(s) 1283
PspGI CCWGG 2 cut(s) 665, 1347
PspLI CGTACG 1 cut(s) 2246
PspN4I GGNNCC 4 cut(s) 608, 620, 1149, 1602
PspOMI GGGCCC 1 cut(s) 606
PspPI GGNCC 4 cut(s) 512, 606, 607, 830
PsrI GAACNNNNNNTAC 6 cut(s) 965, 997, 1073, 1105, 1985, 2017
PstI CTGCAG 2 cut(s) 1462, 1783
PstNI CAGNNNCTG 1 cut(s) 2161
PsuI RGATCY 4 cut(s) 165, 618, 1147, 2083
PsyI GACNNNGTC 2 cut(s) 1417, 1661
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 8 cut(s) 467, 957, 1314, 2020, 2243, 2248, 2252, 2271
RsaNI GTAC 8 cut(s) 466, 956, 1313, 2019, 2242, 2247, 2251, 2270
RseI CAYNNNNRTG 3 cut(s) 477, 918, 990
SacI GAGCTC 1 cut(s) 1615
SacII CCGCGG 1 cut(s) 631
SalI GTCGAC 1 cut(s) 2067
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 7 cut(s) 417, 785, 894, 1020, 1167, 1317, 2048
SatI GCNGC 7 cut(s) 132, 288, 303, 1240, 1477, 1779, 2106
Sau96I GGNCC 4 cut(s) 512, 606, 607, 830
SchI GAGTC 1 cut(s) 1582
ScrFI CCNGG 4 cut(s) 610, 667, 719, 1349
SduI GDGCHC 6 cut(s) 610, 640, 1615, 1691, 1977, 2233
SfaNI GCATC 7 cut(s) 192, 543, 756, 1116, 1183, 1397, 1534
SfcI CTRYAG 6 cut(s) 292, 778, 1458, 1568, 1779, 1884
Sfr303I CCGCGG 1 cut(s) 631
SgrBI CCGCGG 1 cut(s) 631
SmiMI CAYNNNNRTG 3 cut(s) 477, 918, 990
SmlI CTYRAG 3 cut(s) 1316, 1652, 2010
SmoI CTYRAG 3 cut(s) 1316, 1652, 2010
SnaBI TACGTA 1 cut(s) 2250
SseBI AGGCCT 1 cut(s) 1709
SsiI CCGC 5 cut(s) 132, 628, 630, 1155, 2037
SspI AATATT 1 cut(s) 644
SspMI CTAG 5 cut(s) 516, 1152, 1182, 1379, 1737
SstI GAGCTC 1 cut(s) 1615
StuI AGGCCT 1 cut(s) 1709
StyD4I CCNGG 4 cut(s) 608, 665, 717, 1347
StyI CCWWGG 4 cut(s) 334, 384, 1595, 2041
TaaI ACNGT 9 cut(s) 548, 875, 887, 1085, 2018, 2066, 2102, 2126, 2246
TaiI ACGT 2 cut(s) 964, 2252
TaqI TCGA 5 cut(s) 1110, 1644, 1683, 1700, 2068
TatI WGTACW 2 cut(s) 1312, 2018
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 4 cut(s) 1218, 1225, 1288, 1702
Tru1I TTAA 7 cut(s) 417, 785, 894, 1020, 1167, 1317, 2048
Tru9I TTAA 7 cut(s) 417, 785, 894, 1020, 1167, 1317, 2048
TscAI CASTG 3 cut(s) 580, 892, 1462
TseFI GTSAC 5 cut(s) 1370, 1391, 1497, 1563, 1739
TseI GCWGC 6 cut(s) 287, 302, 1239, 1476, 1778, 2105
Tsp45I GTSAC 5 cut(s) 1370, 1391, 1497, 1563, 1739
TspGWI ACGGA 1 cut(s) 1379
TspRI CASTG 3 cut(s) 580, 892, 1462
Tth111I GACNNNGTC 2 cut(s) 1417, 1661
Van91I CCANNNNNTGG 1 cut(s) 1583
Vha464I CTTAAG 1 cut(s) 1316
VneI GTGCAC 2 cut(s) 636, 1687
VspI ATTAAT 1 cut(s) 2048
XagI CCTNNNNNAGG 2 cut(s) 295, 601
XapI RAATTY 7 cut(s) 83, 231, 367, 821, 867, 1301, 1646
XceI RCATGY 1 cut(s) 537
XcmI CCANNNNNNNNNTGG 1 cut(s) 1301
XmiI GTMKAC 1 cut(s) 2068
XmnI GAANNNNTTC 1 cut(s) 2216
XspI CTAG 5 cut(s) 516, 1152, 1182, 1379, 1737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.