Rorug03G0163100

S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
13592070 .. 13592756
687 bp
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UTR
Exon/CDS
Intron
Rorug03G0163100.1

Sequence Viewer

Length: 375 bp
ATGCACAGTATTAGTTGTGTCACCTATGAAGCCAGATTCCTCTGCTTCAACAATTCTGTAGACATGAGGAAGGCGAATATGGATTTTTTGCATCCATGTACTGCTAATAGAGTAACTGAGCTTCCCGGGTTTAAAGATGAAGTTCATATCAGTGTATACCCATCCTCTTCACTCCCTCATGGCATTCCGGAGCAGATGGGTGATAAGACTTGTGGATATTGGATTATGCATTACATGAGGGATATAGTAGAGGACAAAAACCAAGAGTGGAGTGTTAAGTGGGAAAGAAAAGCAAATCACTATTACACAATGGAGAATGTTGATGTTGTCCGGGCAGAGTGGGCAAAGTATGTTATGAAGTTCAAAGATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

14.72

Weight (kDa)

6.28

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012069)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 60, 156
AccIII TCCGGA 1 cut(s) 187
AfaI GTAC 1 cut(s) 100
AgsI TTSAA 2 cut(s) 49, 364
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 187
AsuC2I CCSGG 3 cut(s) 126, 127, 332
AsuHPI GGTGA 2 cut(s) 13, 212
AvaI CYCGRG 1 cut(s) 125
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
BccI CCATC 2 cut(s) 169, 190
BcnI CCSGG 3 cut(s) 126, 127, 332
BfaI CTAG 1 cut(s) 373
BfmI CTRYAG 1 cut(s) 57
Bme1390I CCNGG 3 cut(s) 126, 127, 332
BmeT110I CYCGRG 1 cut(s) 125
BmrFI CCNGG 3 cut(s) 126, 127, 332
BmsI GCATC 1 cut(s) 100
BpuMI CCSGG 3 cut(s) 126, 127, 332
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 91, 161
BseMII CTCAG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 3 cut(s) 126, 188, 331
BsmI GAATGC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 109
BspEI TCCGGA 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 125
BssNAI GTATAC 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 91, 161
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstSCI CCNGG 3 cut(s) 124, 125, 330
BstSFI CTRYAG 1 cut(s) 57
BstZ17I GTATAC 1 cut(s) 157
BtsCI GGATG 2 cut(s) 91, 161
BtsIMutI CAGTG 1 cut(s) 157
Cfr9I CCCGGG 1 cut(s) 125
Csp6I GTAC 1 cut(s) 99
CviAII CATG 4 cut(s) 64, 96, 179, 235
CviJI RGCY 2 cut(s) 32, 121
CviKI_1 RGCY 2 cut(s) 32, 121
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 117
DraI TTTAAA 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 231
FaeI CATG 4 cut(s) 67, 99, 182, 238
FatI CATG 4 cut(s) 63, 95, 178, 234
FblI GTMKAC 2 cut(s) 60, 156
FokI GGATG 2 cut(s) 78, 148
FspBI CTAG 1 cut(s) 373
HapII CCGG 3 cut(s) 126, 188, 331
Hin1II CATG 4 cut(s) 67, 99, 182, 238
HinfI GANTC 1 cut(s) 36
HpaII CCGG 3 cut(s) 126, 188, 331
HphI GGTGA 2 cut(s) 13, 212
Hpy166II GTNNAC 2 cut(s) 61, 157
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 61, 157
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 4, 91, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 4 cut(s) 67, 99, 182, 238
Kpn2I TCCGGA 1 cut(s) 187
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 4 cut(s) 46, 139, 201, 344
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 19, 112
MboII GAAGA 1 cut(s) 159
MluCI AATT 1 cut(s) 52
MnlI CCTC 6 cut(s) 50, 60, 175, 186, 231, 244
Mph1103I ATGCAT 1 cut(s) 231
MroI TCCGGA 1 cut(s) 187
MseI TTAA 2 cut(s) 132, 276
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 3 cut(s) 126, 188, 331
MspR9I CCNGG 3 cut(s) 126, 127, 332
Mva1269I GAATGC 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 3 cut(s) 126, 127, 332
NlaIII CATG 4 cut(s) 67, 99, 182, 238
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 231
PctI GAATGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 36
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 132, 276
ScrFI CCNGG 3 cut(s) 126, 127, 332
SetI ASST 2 cut(s) 26, 123
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 1 cut(s) 52
SspMI CTAG 1 cut(s) 373
StyD4I CCNGG 3 cut(s) 124, 125, 330
TaaI ACNGT 1 cut(s) 8
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 2 cut(s) 132, 276
Tru9I TTAA 2 cut(s) 132, 276
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 42, 134, 153, 371
TspMI CCCGGG 1 cut(s) 125
TspRI CASTG 1 cut(s) 157
XmaI CCCGGG 1 cut(s) 125
XmiI GTMKAC 2 cut(s) 60, 156
XspI CTAG 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.