Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006848

Physical Location & Seq

Genomic Coordinates Forward (+)

1885334 .. 1888615

Gene Structure 3282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGCAAGTACATGAGGAAGACGAAAGCCACTGGTGACGTGGCAGTGATGGAAGTCTCGCAGGCCGCCTCTCTCGGGGTTCGCACCCGAGCCAAAACCCTAGCTCTCCAGCGCTCCACCACCTCCTCCGCCTCCTATCTCCAGCTCCGCAGCCGCCGCCTCCAGAAGCACCCGCCGATTCTCCCGCCTCGAGAGCCCCGCAGGCAGAAGCACCACCACCACCACCACACTCCCAAACAGCCAACGCCGGAAAACCCTAACCCACCCGCCGACGACGGCTCGCCGGAACAGGAGGAGTCGCCGGAAGAGGAGCAGAATAATAATGGCGAAAATGGTGATTTCGGTGATGCTGAAGAAGCTTCGTTCGGAGAGAATGTGCCCGAGTTTGAAGGTAGAGAGAGAACCACAAGGGAATCTACACCTTGCAGCTTGATAAGGGATCCAGACACCATCAGAACCCCTGGTTCTACTACTAGGCCTACTAATTCAGCTGATGCTAACCGGAGAATACAGAACTCATCACAGAGACACATACCAACAGCACATGACATGGATGAGTTCTTTGCTGGTGCTGAAGAAGAGCAGCAGAAGCAATTCATTGACAAATACAACTTTGACCCTGTGAATGATAAGCCGCTACCAGGACGTTATGAATGGGAGAAATTGGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001666 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006810 GO:0006950 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009743 GO:0009746 GO:0009749 GO:0009914 GO:0009921 GO:0009925 GO:0009926 GO:0009958 GO:0009966 GO:0010033 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016323 GO:0022857 GO:0023051 GO:0032991 GO:0034284 GO:0036293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045178 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070482 GO:0071944 GO:0080161 GO:0098590 GO:0098796 GO:0098797 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

224

Amino Acids

25.4

Weight (kDa)

5.88

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	176 - 222	5.2e-20	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57090 AT5G57090
fragaria_vesca	FvH4_4g06870
malus_domestica	MD13G1239200.v1.1 MD16G1244500.v1.1
prunus_persica	Prupe.1G071700_v2.0.a1 Prupe.1G071800_v2.0.a1
pyrus_communis	pycom16g20590
rosa_chinensis	RchiOBHm_Chr4g0398751 RchiOBHm_Chr4g0398781
rosa_laevigata	RLG00000009323 RLG00000009324
rosa_multiflora	Rmu_sc0000458.1_g000007
rosa_roxburghii	Rroxscaffold_5G00343700 Rroxscaffold_5G00343710
rosa_rugosa	Rorug04G0011300 Rorug04G0011400
rosa_samantha	Rh4AG089200 Rh4AG089300 Rh4BG086600 Rh4CG097200 Rh4CG097400 Rh4DG080900 Rh4DG081100
rosa_wichuraiana	Rw4G007370 Rw4G007380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	434, 447, 662
AcuI	CTGAAG	2 cut(s)	372, 594
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	75, 641
AgsI	TTSAA	1 cut(s)	389
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	460, 640
AluBI	AGCT	5 cut(s)	104, 145, 359, 429, 491
AluI	AGCT	5 cut(s)	104, 145, 359, 429, 491
Alw26I	GTCTC	2 cut(s)	61, 520
AlwI	GGATC	3 cut(s)	434, 447, 662
Ama87I	CYCGRG	4 cut(s)	74, 87, 189, 380
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	2 cut(s)	63, 476
ApeKI	GCWGC	3 cut(s)	150, 426, 583
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	3 cut(s)	47, 347, 356
AvaI	CYCGRG	4 cut(s)	74, 87, 189, 380
BaeGI	GKGCMC	1 cut(s)	381
BamHI	GGATCC	2 cut(s)	439, 667
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	162, 438, 595
BccI	CCATC	2 cut(s)	43, 458
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	462, 642
BcoDI	GTCTC	2 cut(s)	61, 520
BfaI	CTAG	2 cut(s)	101, 474
BfoI	RGCGCY	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	202
BisI	GCNGC	7 cut(s)	66, 151, 154, 157, 427, 584, 635
BlsI	GCNGC	7 cut(s)	67, 152, 155, 158, 428, 585, 636
Bme1390I	CCNGG	2 cut(s)	462, 642
BmeT110I	CYCGRG	4 cut(s)	74, 87, 189, 380
BmgBI	CACGTC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	441, 669
BmrFI	CCNGG	2 cut(s)	462, 642
BmsI	GCATC	2 cut(s)	337, 484
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	3 cut(s)	92, 125, 146
BsaJI	CCNNGG	1 cut(s)	460
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 641
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	462, 642
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	75, 641
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	3 cut(s)	115, 308, 323
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	3 cut(s)	162, 438, 595
BshFI	GGCC	2 cut(s)	65, 478
BsiHKCI	CYCGRG	4 cut(s)	74, 87, 189, 380
BsiSI	CCGG	4 cut(s)	248, 284, 302, 502
BslI	CCNNNNNNNGG	2 cut(s)	75, 641
BsmAI	GTCTC	2 cut(s)	61, 520
BsnI	GGCC	2 cut(s)	65, 478
BsoBI	CYCGRG	4 cut(s)	74, 87, 189, 380
Bsp1286I	GDGCHC	2 cut(s)	198, 381
Bsp143I	GATC	2 cut(s)	439, 667
BspANI	GGCC	2 cut(s)	65, 478
BspLI	GGNNCC	2 cut(s)	441, 669
BspPI	GGATC	3 cut(s)	434, 447, 662
BspQI	GCTCTTC	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	2 cut(s)	439, 667
Bst2UI	CCWGG	2 cut(s)	462, 642
Bst6I	CTCTTC	2 cut(s)	300, 573
BstC8I	GCNNGC	3 cut(s)	63, 203, 281
BstDEI	CTNAG	1 cut(s)	672
BstF5I	GGATG	1 cut(s)	559
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	442, 670
BstMAI	GTCTC	2 cut(s)	61, 520
BstMBI	GATC	2 cut(s)	439, 667
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 356, 589
BstNI	CCWGG	2 cut(s)	462, 642
BstSCI	CCNGG	2 cut(s)	460, 640
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	162, 438, 595
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	2 cut(s)	439, 667
BstYI	RGATCY	2 cut(s)	439, 667
BsuRI	GGCC	2 cut(s)	65, 478
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	30, 51
Cac8I	GCNNGC	3 cut(s)	63, 203, 281
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	13, 545, 550
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	2 cut(s)	441, 669
DpnII	GATC	2 cut(s)	439, 667
Eam1104I	CTCTTC	2 cut(s)	300, 573
EarI	CTCTTC	2 cut(s)	300, 573
EciI	GGCGGA	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	372, 594
Eco88I	CYCGRG	4 cut(s)	74, 87, 189, 380
EcoRII	CCWGG	2 cut(s)	460, 640
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	3 cut(s)	16, 548, 553
FaiI	YATR	5 cut(s)	14, 533, 546, 551, 651
FatI	CATG	3 cut(s)	12, 544, 549
FauI	CCCGC	4 cut(s)	180, 192, 206, 274
Fnu4HI	GCNGC	7 cut(s)	66, 151, 154, 157, 427, 584, 635
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	7 cut(s)	66, 151, 154, 157, 427, 584, 635
FspBI	CTAG	2 cut(s)	101, 474
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	7 cut(s)	66, 151, 154, 157, 427, 584, 635
GsuI	CTGGAG	3 cut(s)	92, 125, 146
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	65, 478
HapII	CCGG	4 cut(s)	248, 284, 302, 502
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	16, 548, 553
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	3 cut(s)	178, 296, 413
HpaII	CCGG	4 cut(s)	248, 284, 302, 502
HphI	GGTGA	3 cut(s)	47, 347, 356
Hpy188I	TCNGA	2 cut(s)	368, 455
Hpy188III	TCNNGA	3 cut(s)	163, 191, 443
Hpy99I	CGWCG	2 cut(s)	275, 278
HpyAV	CCTTC	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	39, 646
HpyCH4V	TGCA	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 356, 589
HpyF3I	CTNAG	1 cut(s)	672
HpySE526I	ACGT	2 cut(s)	39, 646
Hsp92II	CATG	3 cut(s)	16, 548, 553
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	439, 667
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	3 cut(s)	119, 150, 310
Lsp1109I	GCAGC	3 cut(s)	162, 438, 595
LweI	GCATC	2 cut(s)	337, 484
MaeI	CTAG	2 cut(s)	101, 474
MaeII	ACGT	2 cut(s)	39, 646
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	2 cut(s)	441, 669
MboI	GATC	2 cut(s)	439, 667
MboII	GAAGA	5 cut(s)	31, 317, 365, 587, 590
MflI	RGATCY	2 cut(s)	439, 667
MhlI	GDGCHC	2 cut(s)	198, 381
MluCI	AATT	3 cut(s)	484, 593, 662
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	9 cut(s)	9, 79, 133, 136, 142, 170, 198, 286, 301
MroXI	GAANNNNTTC	1 cut(s)	593
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	4 cut(s)	248, 284, 302, 502
MspR9I	CCNGG	2 cut(s)	462, 642
MvaI	CCWGG	2 cut(s)	462, 642
MwoI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 356, 589
NdeII	GATC	2 cut(s)	439, 667
NlaIII	CATG	3 cut(s)	16, 548, 553
NlaIV	GGNNCC	2 cut(s)	441, 669
NmuCI	GTSAC	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	178, 413
PkrI	GCNGC	7 cut(s)	67, 152, 155, 158, 428, 585, 636
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	460, 640
PspGI	CCWGG	2 cut(s)	460, 640
PspN4I	GGNNCC	2 cut(s)	441, 669
PsuI	RGATCY	2 cut(s)	439, 667
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	573
SatI	GCNGC	7 cut(s)	66, 151, 154, 157, 427, 584, 635
Sau3AI	GATC	2 cut(s)	439, 667
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	462, 642
SduI	GDGCHC	2 cut(s)	198, 381
SfaNI	GCATC	2 cut(s)	337, 484
Sfr274I	CTCGAG	1 cut(s)	189
SlaI	CTCGAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	484, 593, 662
SseBI	AGGCCT	1 cut(s)	478
SspMI	CTAG	2 cut(s)	101, 474
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	460, 640
TaiI	ACGT	2 cut(s)	42, 649
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	484, 593, 662
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	4 cut(s)	68, 156, 159, 637
TfiI	GAWTC	2 cut(s)	178, 413
TscAI	CASTG	2 cut(s)	37, 51
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	150, 426, 583
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	586, 666
TspRI	CASTG	2 cut(s)	37, 51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	2 cut(s)	101, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.