Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006848

Physical Location & Seq

Genomic Coordinates Reverse (-)

1892091 .. 1895214

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTGGCGATGGAAAGGTCTTCACTTTGGCTCAGGTCTCCGACCACAACACCCCGAAAGACTGCTGGCTAATCATCAATGGCAAGGTTTATGATGTGACCAAGTTCTTGGATGACCATCCTGGTGGTGATGATGTTTTGTTGTCAGCAACAGGGAAGGATGCAACTGATGATTTTGAAGACGTGGGTCACAGTGATAATGCCAGAGACATGTTGAAGGACTTCTATGTGGGAGAGATCGATGCCTCTACTATCCCCAAGAAGACCACATACACTCCTCCCAAGCAGCCTCAGTACAATCAAGACAAGACTTCAGAATTCATCATCAAACTTCTCCAGTTCCTTGTTCCCATTGCCATATTGGGTTTGGCTTTTGGCATCCGCCTATACGCCAAGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001666 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006810 GO:0006950 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009743 GO:0009746 GO:0009749 GO:0009914 GO:0009921 GO:0009925 GO:0009926 GO:0009958 GO:0009966 GO:0010033 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016323 GO:0022857 GO:0023051 GO:0032991 GO:0034284 GO:0036293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045178 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070482 GO:0071944 GO:0080161 GO:0098590 GO:0098796 GO:0098797 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

134

Amino Acids

14.78

Weight (kDa)

4.85

Isoelectric Point (pI)

24.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	9 - 80	3.6e-31	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57090 AT5G57090
fragaria_vesca	FvH4_4g06870
malus_domestica	MD13G1239200.v1.1 MD16G1244500.v1.1
prunus_persica	Prupe.1G071700_v2.0.a1 Prupe.1G071800_v2.0.a1
pyrus_communis	pycom16g20590
rosa_chinensis	RchiOBHm_Chr4g0398751 RchiOBHm_Chr4g0398781
rosa_laevigata	RLG00000009323 RLG00000009324
rosa_multiflora	Rmu_sc0000458.1_g000007
rosa_roxburghii	Rroxscaffold_5G00343700 Rroxscaffold_5G00343710
rosa_rugosa	Rorug04G0011300 Rorug04G0011400
rosa_samantha	Rh4AG089200 Rh4AG089300 Rh4BG086600 Rh4CG097200 Rh4CG097400 Rh4DG080900 Rh4DG081100
rosa_wichuraiana	Rw4G007370 Rw4G007380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	179, 217
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	43, 201
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbsI	GAAGAC	3 cut(s)	13, 186, 269
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	5, 126
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	43, 201
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	151, 232, 387
BoxI	GACNNNNGTC	1 cut(s)	186
BpiI	GAAGAC	3 cut(s)	13, 186, 269
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	240
BseGI	GGATG	4 cut(s)	118, 118, 166, 378
BseJI	GATNNNNATC	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	47, 305
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	43, 201
Bso31I	GGTCTC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	382
BspCNI	CTCAG	2 cut(s)	46, 304
BspDI	ATCGAT	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	337
BssMI	GATC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	33, 291
BstF5I	GGATG	4 cut(s)	118, 118, 166, 378
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	2 cut(s)	43, 201
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	214
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	3 cut(s)	13, 186, 269
BstXI	CCANNNNNNTGG	2 cut(s)	109, 125
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	4 cut(s)	118, 118, 166, 378
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	4 cut(s)	32, 70, 289, 371
CviKI_1	RGCY	4 cut(s)	32, 70, 289, 371
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	33, 291
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	214
FaiI	YATR	6 cut(s)	93, 212, 228, 271, 359, 388
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	4 cut(s)	105, 125, 173, 365
Fsp4HI	GCNGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	320
Hin1II	CATG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	43, 316
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	151, 211
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	33, 291
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	7 cut(s)	20, 52, 108, 135, 138, 217, 350
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	3 cut(s)	151, 232, 387
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	97, 188
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	3 cut(s)	13, 191, 274
MluCI	AATT	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	256, 288, 300
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	97, 188
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	288
PscI	ACATGT	1 cut(s)	210
PshAI	GACNNNNGTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	4 cut(s)	21, 39, 90, 186
SfaNI	GCATC	3 cut(s)	151, 232, 387
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	317
TatI	WGTACW	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	97, 188
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	97, 188
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	2 cut(s)	358, 364
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.