Rorug04G0132000

Paired amphipathic helix protein Sin3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007501
Physical Location & Seq
Reverse (-)
21108133 .. 21108369
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0132000.1

Sequence Viewer

Length: 237 bp
ATGGCGTCCATTGAGGCTGTTACCGCCTCCTTTGCAGCATCTCTTGCTTTAGCCGGCAATGAAGTTATTGATCTGTCTCGTCGAACTGGGGGTGCACCACGCCGTCCTCGACAATCCTACCTACTGGCCAAACCCTTGGCAAAGCAGCCTGCTGCCCTCAACGACCTCAGGCGATTCTTCAAACGCGTATGGGTGCTCGACAAAGGTTTTAAGATTCAGGAGAGAGAGCAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202
Pfam Domains
Protein Families
PAH Sin3_corepress Sin3a_C

Protein Analysis

78

Amino Acids

8.71

Weight (kDa)

10.9

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 1 cut(s) 181
Alw21I GWGCWC 2 cut(s) 97, 198
Alw26I GTCTC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 93
AoxI GGCC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 35, 145, 152
AxyI CCTNAGG 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 128
Bbv12I GWGCWC 2 cut(s) 97, 198
BbvI GCAGC 3 cut(s) 47, 139, 157
BceAI ACGGC 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 235
BisI GCNGC 3 cut(s) 36, 146, 153
BlsI GCNGC 3 cut(s) 37, 147, 154
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 135
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 91, 129
Bse21I CCTNAGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 91, 129
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 3 cut(s) 47, 139, 157
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 97, 198
BsiSI CCGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 97, 198
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 24
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 2 cut(s) 91, 129
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 55, 150
BstDEI CTNAG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstSLI GKGCMC 1 cut(s) 97
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 47, 139, 157
BstXI CCANNNNNNTGG 1 cut(s) 136
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 55, 150
Cfr10I RCCGGY 1 cut(s) 53
CviJI RGCY 4 cut(s) 17, 53, 128, 148
CviKI_1 RGCY 4 cut(s) 17, 53, 128, 148
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaiI YATR 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 36, 146, 153
Fsp4HI GCNGC 3 cut(s) 36, 146, 153
FspBI CTAG 1 cut(s) 235
GluI GCNGC 3 cut(s) 36, 146, 153
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 2 cut(s) 174, 214
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 35, 95
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
HpyF3I CTNAG 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 6 cut(s) 67, 72, 110, 154, 162, 203
Lsp1109I GCAGC 3 cut(s) 47, 139, 157
LweI GCATC 1 cut(s) 47
MaeI CTAG 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 169
MhlI GDGCHC 2 cut(s) 97, 198
MlsI TGGCCA 1 cut(s) 128
MluI ACGCGT 1 cut(s) 184
MluNI TGGCCA 1 cut(s) 128
MnlI CCTC 5 cut(s) 7, 37, 117, 167, 176
Mox20I TGGCCA 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 53
MscI TGGCCA 1 cut(s) 128
MseI TTAA 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 128
MspI CCGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NaeI GCCGGC 1 cut(s) 55
NdeII GATC 1 cut(s) 70
NgoMIV GCCGGC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 174, 214
PkrI GCNGC 3 cut(s) 37, 147, 154
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 36, 146, 153
Sau3AI GATC 1 cut(s) 70
SduI GDGCHC 2 cut(s) 97, 198
SetI ASST 3 cut(s) 123, 168, 208
SfaNI GCATC 1 cut(s) 47
SsiI CCGC 1 cut(s) 24
SspMI CTAG 1 cut(s) 235
StyI CCWWGG 1 cut(s) 135
TaqI TCGA 3 cut(s) 82, 109, 198
TfiI GAWTC 2 cut(s) 174, 214
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 3 cut(s) 35, 145, 152
TspDTI ATGAA 1 cut(s) 75
VneI GTGCAC 1 cut(s) 93
XspI CTAG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.